BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003861
         (2395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   355   3e-95
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   347   6e-93
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   343   2e-91
ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containi...   340   1e-90
ref|XP_002304977.1| predicted protein [Populus trichocarpa] gi|2...   334   7e-89

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
            mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  355 bits (911), Expect = 3e-95
 Identities = 186/386 (48%), Positives = 249/386 (64%)
 Frame = +1

Query: 934  RLYRLFSNNIPTPQILTKTLPKEENPPKPSTNHLTKKIFAEKNLTTLVKNFKTFSERSQF 1113
            RLYR FS +       T  L             + K I+ E+NL  LV+ FK  SE  +F
Sbjct: 7    RLYRAFSTSTAATAQATGNLES-----------VFKDIYRERNLKRLVQKFKKSSELDRF 55

Query: 1114 RRSNHVYEDTVKRLASAKKHSLIEQVLEHQKKFDDITKEGFAIKLITLYGKVGMFDHALK 1293
            R    +YE+TV+RLASAK+   IE++LE QKK+ DI++EGFA++LITLYGK GMFDHA K
Sbjct: 56   RTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLITLYGKSGMFDHAFK 115

Query: 1294 TYNELPELKCTRTVKSFNALLNASIKSKKFSETLKLFRELSSSLSVTPDDYSYNTVIHAY 1473
             ++E+P+ KC R+V SFNALL A + SKKF +    F EL S LSV PD  SYN VI+  
Sbjct: 116  VFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLVSYNIVINGL 175

Query: 1474 IELGNFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFSDGEFFWARMEESGVVPDI 1653
             ++G+ DSAV M+DEMEK  ++PDLITFNTLLNG Y+ G+F DGE  W RME+  ++PDI
Sbjct: 176  CDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNILPDI 235

Query: 1654 ISFNTKLKGLVSGGNISEAVELVEQLGNNVEKPNLFTYNVLIKWYGNNGNLDEAKSVYDN 1833
             S+N KL GLVS   + E + LVE++     KP+ +++N LIK + N+G +DEA + Y  
Sbjct: 236  RSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGK 295

Query: 1834 MLKSDIVPDWFTFEALIPCVCEKGEFGLALKLCEKSIGSNCHVSAGIVQVVVDGLVKGSK 2013
            M ++D +PD  TF  L+P  CEKG F  A +LC++     C V   ++Q  VDGLVKG K
Sbjct: 296  MRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGGK 355

Query: 2014 VEEAKGLMEIAQSKKCYRSKLKMPQE 2091
            V EAK L+++  S    R  LK+P +
Sbjct: 356  VVEAKKLVQLGNSNSYRRYNLKIPTD 381


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
            mitochondrial [Vitis vinifera]
          Length = 383

 Score =  347 bits (891), Expect = 6e-93
 Identities = 185/387 (47%), Positives = 247/387 (63%), Gaps = 1/387 (0%)
 Frame = +1

Query: 934  RLYRLFSNNIPTPQILTKTLPKEENPPKPSTNHLTKKIFAEKNLTTLVKNFKTFSERSQF 1113
            RLYR FS +       T  L             + K I+ E+NL  LV+ FK  SE  +F
Sbjct: 7    RLYRAFSTSTAATAQATGNLES-----------VFKDIYRERNLKRLVQKFKKSSELDRF 55

Query: 1114 RRSNHVYEDTVKRLASAKKHSLIEQVLEHQKKFDDITKEGFAIKLITLYGKVGMFDHALK 1293
            R    +YE+TV+RLASAK+   IE++LE QKK+ DI++EGFA++LI+LYGK GMFDHA K
Sbjct: 56   RTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLISLYGKSGMFDHAFK 115

Query: 1294 TYNELPELKCTRTVKSFNALLNASIKSKKFSETLKLFRELSSSLSVTPDDYSYNTVIHAY 1473
             ++E+P+ KC R+V SFNALL A + SKKF +    F EL S LSV PD  SYN VI   
Sbjct: 116  VFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGL 175

Query: 1474 IELGNFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFSDGEFFWARMEESGVVPDI 1653
             ++G+ DSAV M+DEMEK  ++PDLITFNTLLNG Y+ G+F DGE  W RME+  ++PDI
Sbjct: 176  CDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNILPDI 235

Query: 1654 ISFNTKLKGLVSG-GNISEAVELVEQLGNNVEKPNLFTYNVLIKWYGNNGNLDEAKSVYD 1830
             S+N KL GLVS    + E + LVE++     KP+ +++N LIK + N+G +DEA + Y 
Sbjct: 236  RSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYG 295

Query: 1831 NMLKSDIVPDWFTFEALIPCVCEKGEFGLALKLCEKSIGSNCHVSAGIVQVVVDGLVKGS 2010
             M ++D  PD  TF  L+P  CEKG F  A +LC++     C V   ++Q  VDGLVKG 
Sbjct: 296  KMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGG 355

Query: 2011 KVEEAKGLMEIAQSKKCYRSKLKMPQE 2091
            KV EAK L+++  S    R  LK+P +
Sbjct: 356  KVVEAKKLVQLGNSNSYRRYNLKIPTD 382


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  343 bits (879), Expect = 2e-91
 Identities = 183/387 (47%), Positives = 245/387 (63%), Gaps = 1/387 (0%)
 Frame = +1

Query: 934  RLYRLFSNNIPTPQILTKTLPKEENPPKPSTNHLTKKIFAEKNLTTLVKNFKTFSERSQF 1113
            RLYR FS +       T  L             + K I+ E+NL  LV+ FK  SE  +F
Sbjct: 7    RLYRAFSTSTAATAQATGNLES-----------VFKDIYRERNLKRLVQKFKKSSELDRF 55

Query: 1114 RRSNHVYEDTVKRLASAKKHSLIEQVLEHQKKFDDITKEGFAIKLITLYGKVGMFDHALK 1293
            R    +YE+TV+RLASAK+   IE++LE QKK+ DI++EGFA++LI+LYGK GMFDHA K
Sbjct: 56   RTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLISLYGKSGMFDHAFK 115

Query: 1294 TYNELPELKCTRTVKSFNALLNASIKSKKFSETLKLFRELSSSLSVTPDDYSYNTVIHAY 1473
             ++E+P+ KC R+V SFN LL A + SKKF +    F EL S LSV PD  SYN VI   
Sbjct: 116  VFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGL 175

Query: 1474 IELGNFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFSDGEFFWARMEESGVVPDI 1653
             ++G+ DSAV M+DEMEK  ++PDLITFNTLLN  Y+ G+F DGE  W RME+  ++PDI
Sbjct: 176  CDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKKNILPDI 235

Query: 1654 ISFNTKLKGLVSG-GNISEAVELVEQLGNNVEKPNLFTYNVLIKWYGNNGNLDEAKSVYD 1830
             S+N KL GLVS    + E + LVE++     KP+ +++N LIK + N+G +DEA + Y 
Sbjct: 236  RSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYG 295

Query: 1831 NMLKSDIVPDWFTFEALIPCVCEKGEFGLALKLCEKSIGSNCHVSAGIVQVVVDGLVKGS 2010
             M ++D  PD  TF  L+P  CEKG F  A +LC++     C V   ++Q  VDGLVKG 
Sbjct: 296  KMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQNAVDGLVKGG 355

Query: 2011 KVEEAKGLMEIAQSKKCYRSKLKMPQE 2091
            KV EAK L+++  S    R  LK+P +
Sbjct: 356  KVVEAKKLVQLGNSNSYRRYNLKIPTD 382


>ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
            mitochondrial-like [Cucumis sativus]
          Length = 398

 Score =  340 bits (871), Expect = 1e-90
 Identities = 178/391 (45%), Positives = 253/391 (64%), Gaps = 6/391 (1%)
 Frame = +1

Query: 934  RLYRLFSNN-IPTP-----QILTKTLPKEENPPKPSTNHLTKKIFAEKNLTTLVKNFKTF 1095
            RL+ LF+++  PTP      +   +L  +++   P+   LT     E  L  LV+ F   
Sbjct: 9    RLHCLFNHSRSPTPAFNKPNLSLSSLATKKSKKSPTATPLTD----ENRLQKLVQRFIIN 64

Query: 1096 SERSQFRRSNHVYEDTVKRLASAKKHSLIEQVLEHQKKFDDITKEGFAIKLITLYGKVGM 1275
            SE  QFRR N  Y+ TV+ LA  KK S+IE+++E QKK+D+I +EGF I+LI LYGK GM
Sbjct: 65   SESKQFRRKNDTYDSTVRFLAVRKKFSMIEEIIEAQKKYDEIKEEGFVIRLIRLYGKAGM 124

Query: 1276 FDHALKTYNELPELKCTRTVKSFNALLNASIKSKKFSETLKLFRELSSSLSVTPDDYSYN 1455
            F  A K ++ELPELKC RTV+SFNALL + +KSK+F +  K+FRE+   LS+  D  SYN
Sbjct: 125  FSQARKLFDELPELKCERTVRSFNALLVSCVKSKEFDQVEKIFREVPQELSIEADVSSYN 184

Query: 1456 TVIHAYIELGNFDSAVLMMDEMEKNGVKPDLITFNTLLNGYYSKGQFSDGEFFWARMEES 1635
             VI+AY E+ +FD A+L  + MEKNG++PDL+TFNTLL   Y KGQF DGE  WARME  
Sbjct: 185  IVINAYCEMDDFDKAILFFNHMEKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENK 244

Query: 1636 GVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNNVEKPNLFTYNVLIKWYGNNGNLDEA 1815
             + PD++S+N +L+G+V    I + +EL+ ++     KP++  YN LI  +  +G+L+EA
Sbjct: 245  NIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEA 304

Query: 1816 KSVYDNMLKSDIVPDWFTFEALIPCVCEKGEFGLALKLCEKSIGSNCHVSAGIVQVVVDG 1995
            K  Y  + +S++ P+  T+  L+P +CEKG+F   L+LC+++I          VQ VVDG
Sbjct: 305  KKWYYKLKESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEAINKRFVFHTAEVQRVVDG 364

Query: 1996 LVKGSKVEEAKGLMEIAQSKKCYRSKLKMPQ 2088
            L + SK EEAK L+E+  SK   + KLK+PQ
Sbjct: 365  LAEVSKTEEAKDLVELYNSKNNLKFKLKLPQ 395


>ref|XP_002304977.1| predicted protein [Populus trichocarpa] gi|222847941|gb|EEE85488.1|
            predicted protein [Populus trichocarpa]
          Length = 381

 Score =  334 bits (856), Expect = 7e-89
 Identities = 167/351 (47%), Positives = 241/351 (68%)
 Frame = +1

Query: 1033 LTKKIFAEKNLTTLVKNFKTFSERSQFRRSNHVYEDTVKRLASAKKHSLIEQVLEHQKKF 1212
            L+ ++F E++L  LV+ FK  SE  +FR  + +Y+DT++RLA+AKK   +E++LE+QK++
Sbjct: 29   LSNEVFRERSLKRLVEKFKKASENERFRTKSAIYKDTIRRLAAAKKFRYVEEILENQKQY 88

Query: 1213 DDITKEGFAIKLITLYGKVGMFDHALKTYNELPELKCTRTVKSFNALLNASIKSKKFSET 1392
             D++KEGF  +LI+LYG  GMFD+A K ++E+ E KC RTV SFNALL A + SKKF E 
Sbjct: 89   QDMSKEGFNARLISLYGSSGMFDNARKVFDEMLERKCARTVLSFNALLGACVNSKKFDEV 148

Query: 1393 LKLFRELSSSLSVTPDDYSYNTVIHAYIELGNFDSAVLMMDEMEKNGVKPDLITFNTLLN 1572
              LFR LS  L + PD  SYNTV+ A+ E+G+ DSAV ++DE+EK G+KPDLITFNTLLN
Sbjct: 149  GGLFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLN 208

Query: 1573 GYYSKGQFSDGEFFWARMEESGVVPDIISFNTKLKGLVSGGNISEAVELVEQLGNNVEKP 1752
            G Y+ G+F  GE  W RM+E  V PD  S+N KL GL     + +A ++VE++ +   + 
Sbjct: 209  GLYANGRFDAGERIWQRMKEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEF 268

Query: 1753 NLFTYNVLIKWYGNNGNLDEAKSVYDNMLKSDIVPDWFTFEALIPCVCEKGEFGLALKLC 1932
            ++F+YN LI+ + N G+L+EAK  Y  + KSDI PD  TF+ LIP V EKG+   A  LC
Sbjct: 269  DIFSYNALIRGFVNEGDLEEAKGWYGEIRKSDIKPDKLTFKTLIPFVVEKGDVAFAFDLC 328

Query: 1933 EKSIGSNCHVSAGIVQVVVDGLVKGSKVEEAKGLMEIAQSKKCYRSKLKMP 2085
            + ++ S   V   ++Q V+D L K SK+ EAK L+E++++++    KL +P
Sbjct: 329  KDALSSKLAVKEALIQPVLDALAKESKINEAKELVELSKARRSDSLKLTLP 379