BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003748
         (2361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containi...   598   e-168
ref|XP_002515001.1| pentatricopeptide repeat-containing protein,...   575   e-161
ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containi...   551   e-154
ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containi...   551   e-154
ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containi...   540   e-151

>ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
            mitochondrial [Vitis vinifera]
          Length = 496

 Score =  598 bits (1543), Expect = e-168
 Identities = 279/452 (61%), Positives = 355/452 (78%)
 Frame = +1

Query: 295  VEVLASKVRVGNNEEEVMQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 474
            ++++ S++R G++++EV ++L+ D+ C +I +S  LVD LL RF+DDWKSALG+F+WA +
Sbjct: 45   IDIIVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAES 104

Query: 475  RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 654
            R+GY+H P+AY   VDILGK K++ +M  L++EM +GN V L  +AK MRRL GAG+WED
Sbjct: 105  RLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWED 164

Query: 655  AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 834
            A+++FDDLG F LEKNTE+MNLLLDTLCKE++V  AR +FLELK +ISPN HTFNIFIHG
Sbjct: 165  AVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHG 224

Query: 835  WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 1014
            WCK NR+DEA WT+QEMKGHGC PC+I+YSTI+Q+YC Q NFRKVYELLD+M+AQGC+PN
Sbjct: 225  WCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPN 284

Query: 1015 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNALIHVLGRAGRLCEAAHIFE 1194
            VVTYTT+M SL K +++EEALQ+ ERM+S  CKPDTLFYNALIH LGRAG+L EA  +FE
Sbjct: 285  VVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFE 344

Query: 1195 VEMPMSGIIPNTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKLCLR 1374
            VEMP +G+ PNTSTYN+MIAM+CHHSQEQ AL +L+E+E ST CKPD++TY P+LK C +
Sbjct: 345  VEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFK 404

Query: 1375 TGKIXXXXXXXXXXMLKKXXXXXXXXXXXXXXXXXCRANKCERAYNVLEEMIRQEIRPRY 1554
            TGKI          M+ K                 CRANKCE  YN+ EEM+ + I PRY
Sbjct: 405  TGKI-DSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRY 463

Query: 1555 QTCRLLLDEVKQKSMTDVSDRIEDLMKQMKTS 1650
            +TC LLLDE+KQK+M D ++RIE  MKQMKTS
Sbjct: 464  KTCALLLDEIKQKNMHDAAERIEVFMKQMKTS 495


>ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223546052|gb|EEF47555.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 466

 Score =  575 bits (1482), Expect = e-161
 Identities = 272/449 (60%), Positives = 350/449 (77%)
 Frame = +1

Query: 295  VEVLASKVRVGNNEEEVMQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 474
            ++V+ +K+RVG++ +E++Q+L+ D+ C SI LS  LVD LLFRF+DDWKSALGVF+WA +
Sbjct: 18   IDVIVAKIRVGSSHDEIVQSLVHDEVCNSIHLSHELVDKLLFRFKDDWKSALGVFRWAES 77

Query: 475  RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 654
            R GYKH+P+AY   VDI+GK K++ +M  LL+EM +G  VTL+ + K MRR  GA +WE+
Sbjct: 78   RAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRFAGARQWEN 137

Query: 655  AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 834
             +++FD LGTFGLEKNTE+MNLLLDTLCKE++V LAR++FL+LK +ISPNA+TFNIFIHG
Sbjct: 138  VLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSHISPNANTFNIFIHG 197

Query: 835  WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 1014
            WCK NR++EA WT+QEMKGHGCTPC+I+YSTIVQ YC++ NF KVYELLDEM AQG  PN
Sbjct: 198  WCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPN 257

Query: 1015 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNALIHVLGRAGRLCEAAHIFE 1194
            VVTYT++M +LAK +EYEEALQ+ +RMKS  CKPDTLFYN+LIH LG+AGR  EA  +FE
Sbjct: 258  VVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFE 317

Query: 1195 VEMPMSGIIPNTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKLCLR 1374
            VEMP +G+ PNTSTYN+MIAM CHHSQE+ AL +L+E+E S +CKPD++TY PLLK C +
Sbjct: 318  VEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKPDVQTYYPLLKSCFK 377

Query: 1375 TGKIXXXXXXXXXXMLKKXXXXXXXXXXXXXXXXXCRANKCERAYNVLEEMIRQEIRPRY 1554
             G I          M+KK                 CRANKCE AY + EEMI +++ P+Y
Sbjct: 378  AGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKY 437

Query: 1555 QTCRLLLDEVKQKSMTDVSDRIEDLMKQM 1641
            QTCRLLLDEVK K M D + +IE +M+++
Sbjct: 438  QTCRLLLDEVKLKHMYDAAQKIEIVMQKI 466


>ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
            mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  551 bits (1419), Expect = e-154
 Identities = 263/449 (58%), Positives = 341/449 (75%)
 Frame = +1

Query: 295  VEVLASKVRVGNNEEEVMQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 474
            ++ + +KV+VG++E+EV Q+LL+D  C SIQLS  LV  LL RF+DDWKSALGVF+WA +
Sbjct: 40   IDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAES 99

Query: 475  RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 654
              G+KHTP  Y   +D LGK K++ +M  +L+EM E   VTL+ +AK MRR  GAG+WE+
Sbjct: 100  LSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWEN 159

Query: 655  AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 834
            A++IFDDL T+GLEKNTE+MN+LLDTLCKEK+V  AR ++LELK +I+PNA+TFN+FIHG
Sbjct: 160  AVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHG 219

Query: 835  WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 1014
            WCK N+IDEA+WTL+EMKG+G  PC+I+YSTI+  YC++ NF KVYELLDEM AQGC  N
Sbjct: 220  WCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 279

Query: 1015 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNALIHVLGRAGRLCEAAHIFE 1194
            V+TYTT+M SL K +E+EEALQ+ ERMKS   +PDTLFYN LIH LGRAG++ EA H+FE
Sbjct: 280  VITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFE 339

Query: 1195 VEMPMSGIIPNTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKLCLR 1374
            VEMP   ++PNTSTYN+MIAMYC  ++E+ A+ +L+EM+KS  CKPD++TY PLLK C R
Sbjct: 340  VEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFR 399

Query: 1375 TGKIXXXXXXXXXXMLKKXXXXXXXXXXXXXXXXXCRANKCERAYNVLEEMIRQEIRPRY 1554
            TGK           M+ K                 CRANKC+ AY + E+MI Q+I+PRY
Sbjct: 400  TGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRY 459

Query: 1555 QTCRLLLDEVKQKSMTDVSDRIEDLMKQM 1641
             TC+LLLDE KQK+M  V+DRIE +MK++
Sbjct: 460  LTCQLLLDEFKQKNMDGVADRIEGIMKKL 488


>ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
            mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  551 bits (1419), Expect = e-154
 Identities = 263/449 (58%), Positives = 341/449 (75%)
 Frame = +1

Query: 295  VEVLASKVRVGNNEEEVMQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 474
            ++ + +KV+VG++E+EV Q+LL+D  C SIQLS  LV  LL RF+DDWKSALGVF+WA +
Sbjct: 71   IDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAES 130

Query: 475  RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 654
              G+KHTP  Y   +D LGK K++ +M  +L+EM E   VTL+ +AK MRR  GAG+WE+
Sbjct: 131  LSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWEN 190

Query: 655  AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 834
            A++IFDDL T+GLEKNTE+MN+LLDTLCKEK+V  AR ++LELK +I+PNA+TFN+FIHG
Sbjct: 191  AVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHG 250

Query: 835  WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 1014
            WCK N+IDEA+WTL+EMKG+G  PC+I+YSTI+  YC++ NF KVYELLDEM AQGC  N
Sbjct: 251  WCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 310

Query: 1015 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNALIHVLGRAGRLCEAAHIFE 1194
            V+TYTT+M SL K +E+EEALQ+ ERMKS   +PDTLFYN LIH LGRAG++ EA H+FE
Sbjct: 311  VITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFE 370

Query: 1195 VEMPMSGIIPNTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKLCLR 1374
            VEMP   ++PNTSTYN+MIAMYC  ++E+ A+ +L+EM+KS  CKPD++TY PLLK C R
Sbjct: 371  VEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFR 430

Query: 1375 TGKIXXXXXXXXXXMLKKXXXXXXXXXXXXXXXXXCRANKCERAYNVLEEMIRQEIRPRY 1554
            TGK           M+ K                 CRANKC+ AY + E+MI Q+I+PRY
Sbjct: 431  TGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRY 490

Query: 1555 QTCRLLLDEVKQKSMTDVSDRIEDLMKQM 1641
             TC+LLLDE KQK+M  V+DRIE +MK++
Sbjct: 491  LTCQLLLDEFKQKNMDGVADRIEGIMKKL 519


>ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
            mitochondrial-like [Glycine max]
          Length = 490

 Score =  540 bits (1391), Expect = e-151
 Identities = 254/450 (56%), Positives = 340/450 (75%)
 Frame = +1

Query: 292  YVEVLASKVRVGNNEEEVMQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAG 471
            YV++L +K+  G++EEE +  L  DQ C  I LS  LV  LL+R++DDWKSALGVF+WA 
Sbjct: 41   YVDILTAKLGKGSSEEETLHTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWAS 100

Query: 472  TRVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWE 651
            +R  ++H+ ++Y   VDILG+ K + ++  LL+EM EG  V +  +AK MRR  GAG+W 
Sbjct: 101  SRPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWV 160

Query: 652  DAIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIH 831
            DA++IFDDL   GLEKNTE+MNLLLDTLCKEK V  AR++FLELK++I+PNAHTFNIFIH
Sbjct: 161  DAVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIH 220

Query: 832  GWCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSP 1011
            GWCK  R+DEA+WT+QEMKG+G  PC+I+YST++Q YC + NF +VYELLDEM+AQGCS 
Sbjct: 221  GWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSA 280

Query: 1012 NVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNALIHVLGRAGRLCEAAHIF 1191
            NV+TYT++M +L K  ++EEAL+V ERM+S  C+PDTLF+N+LIH LGRAGRL +AA +F
Sbjct: 281  NVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVF 340

Query: 1192 EVEMPMSGIIPNTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKLCL 1371
            +VEMP +G+ PNTSTYN+MI+M+C+H+QE+ AL +L+EME S  CKPD +TY+PL+K C 
Sbjct: 341  KVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCF 400

Query: 1372 RTGKIXXXXXXXXXXMLKKXXXXXXXXXXXXXXXXXCRANKCERAYNVLEEMIRQEIRPR 1551
            R+GKI          M+ K                 CR ++C  A+++ EEMI Q+I PR
Sbjct: 401  RSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPR 460

Query: 1552 YQTCRLLLDEVKQKSMTDVSDRIEDLMKQM 1641
            Y+TCRLLLDEVKQK+M   +++IEDLMK++
Sbjct: 461  YRTCRLLLDEVKQKNMYQAAEKIEDLMKKL 490