BLASTX nr result

ID: Coptis25_contig00003746 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003746
         (1414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270995.1| PREDICTED: uncharacterized protein LOC100254...   189   4e-61
ref|XP_002303644.1| predicted protein [Populus trichocarpa] gi|2...   191   2e-55
ref|XP_002299479.1| predicted protein [Populus trichocarpa] gi|2...   185   3e-52
ref|XP_004149749.1| PREDICTED: uncharacterized protein LOC101203...   170   1e-47
ref|XP_002509953.1| conserved hypothetical protein [Ricinus comm...   168   1e-45

>ref|XP_002270995.1| PREDICTED: uncharacterized protein LOC100254757 [Vitis vinifera]
            gi|297742326|emb|CBI34475.3| unnamed protein product
            [Vitis vinifera]
          Length = 381

 Score =  189 bits (481), Expect(3) = 4e-61
 Identities = 98/210 (46%), Positives = 135/210 (64%)
 Frame = +3

Query: 483  ESPELSLLIQNKGTSLLSLKISAPDYVHLETNTVHLQQNEDKKVKVSIGKESKDTFIVLT 662
            +SP+LSLLIQNKG + L++ ISAPD+V LE+  + LQ+ EDKKVKVSI     D  IVLT
Sbjct: 185  DSPDLSLLIQNKGKTALTVTISAPDFVKLESTKIELQEKEDKKVKVSIRNGGSDNSIVLT 244

Query: 663  AKDRNCSINFKDLIPHNSGKKTDHTAKSAFVDIVTKVPSIVFLSIAAVILVASSWMCVRF 842
            A    CS++FKDLI   + K TD+  +S   + +T+  S+ FL + A++  AS+W+C+ F
Sbjct: 245  AGKGRCSLDFKDLIAQIAQKGTDNIPESTDGNFLTRTSSLAFLFLVALVAAASAWICISF 304

Query: 843  RSKHLTGEGTKYQKLETELPVTSAGKKETDVTGKKETXXXXXXXXXXXXXXXXXXXXXEE 1022
            + K+    G+KYQKL+ ELPV+  GK E D+    +                      EE
Sbjct: 305  KRKYFPSSGSKYQKLDMELPVSGGGKVEADINDGWDN-------------SWGDTWDDEE 351

Query: 1023 APRTPSMPITPSLSSKGLASRRLSKDAWKD 1112
            AP+TPSMP+TPSLS++GLA+RRLSK+ WKD
Sbjct: 352  APKTPSMPLTPSLSARGLAARRLSKEGWKD 381



 Score = 62.0 bits (149), Expect(3) = 4e-61
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 284 EGNSVATKPTKKESVRGEECDSSSTCKDEINKLVACLRVPGD 409
           EG   ++KP KKES++GEECD S+ C D+INKLVACLRVPG+
Sbjct: 143 EGVLESSKPGKKESLQGEECDPSNQCVDDINKLVACLRVPGN 184



 Score = 32.3 bits (72), Expect(3) = 4e-61
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  VEDKKKNVHGTDNLSKDPDSKEVPKVGTGKDDSSKKPHVKDG-NKKEGTDDGSGSK 177
           VE  K+ +     L    DSKE     TGK   SK+   + G NKKE   DGS SK
Sbjct: 83  VESTKEKISSIKQL----DSKEADNEHTGKGSLSKELETEGGDNKKEKPGDGSKSK 134


>ref|XP_002303644.1| predicted protein [Populus trichocarpa] gi|222841076|gb|EEE78623.1|
            predicted protein [Populus trichocarpa]
          Length = 288

 Score =  191 bits (485), Expect(2) = 2e-55
 Identities = 101/211 (47%), Positives = 135/211 (63%), Gaps = 1/211 (0%)
 Frame = +3

Query: 483  ESPELSLLIQNKGTSLLSLKISAPDYVHLETNTVHLQQNEDKKVKVSIGKESKDTFIVLT 662
            ESP+LSLLIQNKG   LS+ ISAPD+VHLE   + L++ EDKKVKVSI     +  IVL 
Sbjct: 91   ESPDLSLLIQNKGKGSLSVTISAPDFVHLEKTKIQLKEKEDKKVKVSITSRGSENLIVLR 150

Query: 663  AKDRNCSINFKDLIPHNSGKKTDHTAKSA-FVDIVTKVPSIVFLSIAAVILVASSWMCVR 839
            A +  C ++ KD I H  GK+ D + KS   ++ +++  +IV LS AA++++AS WMC+ 
Sbjct: 151  AGNGQCKLDIKDTIAHYFGKEFDKSHKSTDIINFMSRTSTIVVLSFAALLILASGWMCIS 210

Query: 840  FRSKHLTGEGTKYQKLETELPVTSAGKKETDVTGKKETXXXXXXXXXXXXXXXXXXXXXE 1019
            FR KH +   +KYQ+LE ELPV+  GK E++     +                      E
Sbjct: 211  FRRKHPSNNTSKYQRLEMELPVSGEGKTESETNDGWDN-------------SWGDDWDDE 257

Query: 1020 EAPRTPSMPITPSLSSKGLASRRLSKDAWKD 1112
            EAP+ PS+P+TPSLSSKGLASRRLSK+AWKD
Sbjct: 258  EAPKAPSLPVTPSLSSKGLASRRLSKEAWKD 288



 Score = 52.8 bits (125), Expect(2) = 2e-55
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +2

Query: 275 LTTEGNSVATKPTKKESVRGEECDSSSTCKDEINKLVACLRVPGD 409
           L+ E N      ++KE  R EECD S+ C DE NKLVACLRVPG+
Sbjct: 46  LSKEKNDKGDTQSRKEGPRVEECDQSNKCTDEENKLVACLRVPGN 90


>ref|XP_002299479.1| predicted protein [Populus trichocarpa] gi|222846737|gb|EEE84284.1|
            predicted protein [Populus trichocarpa]
          Length = 373

 Score =  185 bits (469), Expect(2) = 3e-52
 Identities = 99/211 (46%), Positives = 133/211 (63%), Gaps = 1/211 (0%)
 Frame = +3

Query: 483  ESPELSLLIQNKGTSLLSLKISAPDYVHLETNTVHLQQNEDKKVKVSIGKESKDTFIVLT 662
            ESP+LSLLIQNKG   L++ ISAPD+VHLE   + LQ+ ++KKVKVSI     +  IVLT
Sbjct: 176  ESPDLSLLIQNKGKGPLNVTISAPDFVHLEKTKIQLQEKDNKKVKVSITGGGSENLIVLT 235

Query: 663  AKDRNCSINFKDLIPHNSGKKTDHTAKSA-FVDIVTKVPSIVFLSIAAVILVASSWMCVR 839
            A    C ++ KD I H  GK+   + +SA  ++ +++  +I  LS AA++++AS WMC+ 
Sbjct: 236  AGKGQCKLDIKDTIAHYLGKELHKSHESADIINSMSRTSTIAVLSFAALLILASGWMCIS 295

Query: 840  FRSKHLTGEGTKYQKLETELPVTSAGKKETDVTGKKETXXXXXXXXXXXXXXXXXXXXXE 1019
            FR KHL+    +YQ+LE ELPV+  GK E+      +                      E
Sbjct: 296  FRRKHLSYNNPRYQRLEMELPVSGGGKTESKTNDGWDN-------------NWGDDWDDE 342

Query: 1020 EAPRTPSMPITPSLSSKGLASRRLSKDAWKD 1112
            EAP+TPS+P+TPSLSSKGLASRRLSKD WKD
Sbjct: 343  EAPKTPSLPVTPSLSSKGLASRRLSKDGWKD 373



 Score = 48.5 bits (114), Expect(2) = 3e-52
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +2

Query: 284 EGNSVATKPTKKESVRGEECDSSSTCKDEINKLVACLRVPGD 409
           E N      ++KE    EECD S+ C DE NKLVACLRVPG+
Sbjct: 134 EKNDERDTQSRKEGPHVEECDPSNKCTDEENKLVACLRVPGN 175


>ref|XP_004149749.1| PREDICTED: uncharacterized protein LOC101203513 [Cucumis sativus]
          Length = 376

 Score =  170 bits (430), Expect(2) = 1e-47
 Identities = 91/210 (43%), Positives = 126/210 (60%)
 Frame = +3

Query: 483  ESPELSLLIQNKGTSLLSLKISAPDYVHLETNTVHLQQNEDKKVKVSIGKESKDTFIVLT 662
            +SP+L LLIQNKG   L+ KISAPD+VHLE + V LQ+ E+KKVKVSIG       IVLT
Sbjct: 181  DSPQLLLLIQNKGKGPLTAKISAPDFVHLEKSEVQLQERENKKVKVSIGDGGDGNTIVLT 240

Query: 663  AKDRNCSINFKDLIPHNSGKKTDHTAKSAFVDIVTKVPSIVFLSIAAVILVASSWMCVRF 842
            +    CS++F+DL+ H++ K +D+  KS++   +TK   I  L+   ++ +A+  + +  
Sbjct: 241  SGGGRCSLDFRDLVAHHNAKDSDNVPKSSWFSYLTKPHVIAILAFGVILTIAAVSVIISI 300

Query: 843  RSKHLTGEGTKYQKLETELPVTSAGKKETDVTGKKETXXXXXXXXXXXXXXXXXXXXXEE 1022
            R K+     +KYQ+L+ ELPV+  GK   D     E                      +E
Sbjct: 301  RRKNFVSSNSKYQRLDMELPVSLGGKAVADNNDGWEN--------------SWDDNWDDE 346

Query: 1023 APRTPSMPITPSLSSKGLASRRLSKDAWKD 1112
             P TPS+P+TPSLSSKGLASRRL+KD WKD
Sbjct: 347  TPHTPSLPVTPSLSSKGLASRRLNKDGWKD 376



 Score = 48.1 bits (113), Expect(2) = 1e-47
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +2

Query: 290 NSVATKPTKKESVRGEECDSSSTCKDEINKLVACLRVPGD 409
           ++V++   + +   GE+CDSS+ C DE  KLVACLRVPG+
Sbjct: 141 STVSSASKRNDGSSGEDCDSSNKCTDEAKKLVACLRVPGN 180


>ref|XP_002509953.1| conserved hypothetical protein [Ricinus communis]
            gi|223549852|gb|EEF51340.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 372

 Score =  168 bits (426), Expect(2) = 1e-45
 Identities = 88/207 (42%), Positives = 127/207 (61%)
 Frame = +3

Query: 492  ELSLLIQNKGTSLLSLKISAPDYVHLETNTVHLQQNEDKKVKVSIGKESKDTFIVLTAKD 671
            + SLL+QNKG + L++ ISAPDYVH+E   + LQ  EDKKV VSI     D  IVL   +
Sbjct: 182  QYSLLVQNKGKNPLTVTISAPDYVHIEKTEIQLQSKEDKKVPVSIRHGGNDNLIVLRTGN 241

Query: 672  RNCSINFKDLIPHNSGKKTDHTAKSAFVDIVTKVPSIVFLSIAAVILVASSWMCVRFRSK 851
              C+++ K L+  N     D + KS +++ +++ P I  L+ AA++++A+ W C+ FR K
Sbjct: 242  GRCNLDIKHLVTENF---LDISQKSGYINYMSRTPVIAVLAFAALLILAAGWTCISFRRK 298

Query: 852  HLTGEGTKYQKLETELPVTSAGKKETDVTGKKETXXXXXXXXXXXXXXXXXXXXXEEAPR 1031
             L+  G+KYQ+L+ ELPV++  K E++     +                      EEAP+
Sbjct: 299  QLSSSGSKYQRLDMELPVSTGEKAESEQNDGWDDKWGDDWDD-------------EEAPK 345

Query: 1032 TPSMPITPSLSSKGLASRRLSKDAWKD 1112
            TPS+P+TPSLSSKGLASRRLSK+ WKD
Sbjct: 346  TPSLPVTPSLSSKGLASRRLSKEGWKD 372



 Score = 42.7 bits (99), Expect(2) = 1e-45
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +2

Query: 335 EECDSSSTCKDEINKLVACLRVPGD 409
           EECD S+ C DE N+LVACLRVPG+
Sbjct: 156 EECDPSNKCTDEENQLVACLRVPGN 180


Top