BLASTX nr result
ID: Coptis25_contig00003723
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003723
(1703 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding prot... 532 e-148
gb|ABK95931.1| unknown [Populus trichocarpa] 521 e-145
ref|XP_002324068.1| predicted protein [Populus trichocarpa] gi|2... 505 e-140
ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding prot... 500 e-139
ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding prot... 500 e-139
>ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera] gi|296082938|emb|CBI22239.3| unnamed
protein product [Vitis vinifera]
Length = 449
Score = 532 bits (1370), Expect = e-148
Identities = 267/286 (93%), Positives = 276/286 (96%), Gaps = 1/286 (0%)
Frame = -3
Query: 1647 MSSTSQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE 1468
MS++ QPQFRYTQTPSKVLHLRNLPWEC EEELVELCKPFGKIVNTKCNVGANRNQAFVE
Sbjct: 1 MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVE 60
Query: 1467 FVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGVE 1288
F+D NQAISMVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVE
Sbjct: 61 FLDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVE 120
Query: 1287 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNALDGRSIPRYLL 1108
AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETA+SARNALDGRSIPRYLL
Sbjct: 121 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLL 180
Query: 1107 PEHV-SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTMQPTLGPDGKRKEP 931
PEHV SC+LRISYSAHTDLNIKFQSHRSRDYTNPYLPVNP+AIEG QP LGPDGK+KEP
Sbjct: 181 PEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPALGPDGKKKEP 240
Query: 930 ESNVLLASIENLQYAVTVDVLHTVFSAFGTVQKIAIFDKNGGMQAL 793
ESNVLLASIEN+QYAVTVDVLHTVFSAFGTVQKIAIF+KNGGMQAL
Sbjct: 241 ESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQAL 286
Score = 102 bits (253), Expect = 4e-19
Identities = 63/147 (42%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = -1
Query: 680 AHNDRSRDYTIPE-GMLPMQQAAAPP--TSGWQSPQAASGYPGNNYAVGMQGQVPEGQSA 510
AH+DRSRDYTIP+ G+L +QQA P T+ WQ+PQAA Y G++ A QVP
Sbjct: 329 AHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQNPQAAPLYTGHDAAAAAAVQVPS---- 384
Query: 509 PWDPSTQAGRQSFVSVPTTFPGQTFAQPTGPAYHGAGTFPGSAPLHPPGQGPTGVSSSSH 330
WDP+ QAGR +F S + FP Q FA + AY PGS+PL P
Sbjct: 385 -WDPNMQAGRSTFASAASAFPSQPFASSSISAYPAP---PGSSPLTP------------- 427
Query: 329 SMPQYAPQSNYRPAGTPPAGQSPYYGQ 249
A N RP G P G+ PY+GQ
Sbjct: 428 -----AVPPNVRPGGASPPGRPPYFGQ 449
Score = 101 bits (252), Expect = 5e-19
Identities = 56/104 (53%), Positives = 70/104 (67%)
Frame = -3
Query: 1320 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNA 1141
NVLL +IE ++ V++DV+H VFSAFG V KIA FEK G QALIQ+ D TAA A+ A
Sbjct: 243 NVLLASIENMQYA-VTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEA 301
Query: 1140 LDGRSIPRYLLPEHVSCNLRISYSAHTDLNIKFQSHRSRDYTNP 1009
L+G + + + C L +SYS HTDLN+K S RSRDYT P
Sbjct: 302 LEG-----HCIYDGGYCKLHLSYSRHTDLNVKAHSDRSRDYTIP 340
>gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 521 bits (1342), Expect = e-145
Identities = 258/286 (90%), Positives = 275/286 (96%), Gaps = 1/286 (0%)
Frame = -3
Query: 1647 MSSTSQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE 1468
MS++ QPQFRYTQTPSKVLHLRNLPWEC EEEL+ELCKPFG+IVNTKCNVGANRNQAFVE
Sbjct: 1 MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVE 60
Query: 1467 FVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGVE 1288
FVDQNQAI MVSYYASSS+PAQVRGKTVYIQYSNR EIVNNKS GD GNVLLVTIEGVE
Sbjct: 61 FVDQNQAIQMVSYYASSSDPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVE 120
Query: 1287 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNALDGRSIPRYLL 1108
AGDVSIDVIHLVFSAFG++HKIATFEKAAGFQALIQFTD+ETA+SARNALDGRSIPRYLL
Sbjct: 121 AGDVSIDVIHLVFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLL 180
Query: 1107 PEHV-SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTMQPTLGPDGKRKEP 931
PEHV SC+LRISYSAHTDLNIKFQSHRSRDYTNPYLPVNP+AIEG +QPT+G DGK+KEP
Sbjct: 181 PEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGPVQPTVGADGKKKEP 240
Query: 930 ESNVLLASIENLQYAVTVDVLHTVFSAFGTVQKIAIFDKNGGMQAL 793
ESNVLLASIEN+QYAVT+DVLHTVFSAFGTVQKIAIF+KNGG QAL
Sbjct: 241 ESNVLLASIENMQYAVTIDVLHTVFSAFGTVQKIAIFEKNGGTQAL 286
Score = 122 bits (305), Expect = 4e-25
Identities = 69/147 (46%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Frame = -1
Query: 680 AHNDRSRDYTIPEGMLPMQQAAAPPTSG--WQSPQAASGYPGNNYAV--GMQGQVPEGQS 513
A++D+SRDYTIP+ L QA T+ WQ+PQA S Y GNNYA + QVP GQ
Sbjct: 329 AYSDKSRDYTIPDASLIAAQAPGLHTAPTMWQNPQAGSMYTGNNYATTAAVPVQVPPGQV 388
Query: 512 APWDPSTQAGRQSFVSVPTTFPGQTFAQPTGPAYHGAGTFPGSAPLHPPGQGPTGVSSSS 333
WDP+ QAG Q + SVP T+PGQT+ P AY A GS+P P S +S
Sbjct: 389 PAWDPTMQAGGQGYASVPGTYPGQTYPTPPASAYATAAIPAGSSP--RSHSSPISHSVAS 446
Query: 332 HSMPQYAPQSNYRPAGTPPAGQSPYYG 252
+M QSN RP+G P GQ PYYG
Sbjct: 447 MAMSHPGMQSNLRPSGASPPGQPPYYG 473
Score = 98.2 bits (243), Expect = 6e-18
Identities = 55/104 (52%), Positives = 69/104 (66%)
Frame = -3
Query: 1320 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNA 1141
NVLL +IE ++ V+IDV+H VFSAFG V KIA FEK G QALIQ+ D TAA A+
Sbjct: 243 NVLLASIENMQYA-VTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKET 301
Query: 1140 LDGRSIPRYLLPEHVSCNLRISYSAHTDLNIKFQSHRSRDYTNP 1009
L+G + + + C L +SYS HTDLN+K S +SRDYT P
Sbjct: 302 LEG-----HCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIP 340
>ref|XP_002324068.1| predicted protein [Populus trichocarpa] gi|222867070|gb|EEF04201.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 505 bits (1300), Expect = e-140
Identities = 255/290 (87%), Positives = 270/290 (93%), Gaps = 5/290 (1%)
Frame = -3
Query: 1647 MSSTSQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE 1468
MS++ QPQFRYTQTPSKVLHLRNLPWEC EEEL+ELC+PFGKIVNTKCNVG NRNQAFVE
Sbjct: 1 MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVE 60
Query: 1467 FVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGVE 1288
F +QNQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GD GNVLLVTIEGVE
Sbjct: 61 FAEQNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVE 120
Query: 1287 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNALDGRSIP---- 1120
AGDVSIDVIHLVFSAFG+VHKIATFEKAAGFQALIQFTDAETA+SARNALDGR+I
Sbjct: 121 AGDVSIDVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRNIMFKKF 180
Query: 1119 RYLLPEHV-SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTMQPTLGPDGK 943
RYLLPEHV SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNP+AI+G +Q T+G DGK
Sbjct: 181 RYLLPEHVGSCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIDGPVQSTVGADGK 240
Query: 942 RKEPESNVLLASIENLQYAVTVDVLHTVFSAFGTVQKIAIFDKNGGMQAL 793
+KEPESNVLLASIEN+QYAVTVDVLHTVFS FGTVQKIAIF+KNGG QAL
Sbjct: 241 KKEPESNVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQAL 290
Score = 113 bits (283), Expect = 1e-22
Identities = 69/150 (46%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Frame = -1
Query: 680 AHNDRSRDYTIPEGMLPMQQA----AAPPTSGWQSPQAASGYPGNNYAV--GMQGQVPEG 519
A +D+SRDYTIP+ QA AP T WQ+PQA S Y G+NYA QVP G
Sbjct: 333 AFSDKSRDYTIPDASFLTAQAPGLHTAPTT--WQNPQAGSMYLGSNYATTAAAPAQVPPG 390
Query: 518 QSAPWDPSTQAGRQSFVSVPTTFPGQTFAQPTGPAYHGAGTFPGSAPLHPPGQGPTGVSS 339
Q A WDPS QAG + SV +PGQT+ PT PAY + PGS+P GV+S
Sbjct: 391 QVAAWDPSMQAGGPGYSSVRGMYPGQTY--PTPPAYASSALPPGSSPHSYSSPISPGVAS 448
Query: 338 SSHSMPQYAPQSNYRPAGTPPAGQSPYYGQ 249
+ P P N RP G P GQ+PYYG+
Sbjct: 449 MGMTHPGVQP--NMRPGGASPPGQTPYYGR 476
Score = 95.5 bits (236), Expect = 4e-17
Identities = 53/104 (50%), Positives = 68/104 (65%)
Frame = -3
Query: 1320 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNA 1141
NVLL +IE ++ V++DV+H VFS FG V KIA FEK G QALIQ+ D TAA A+
Sbjct: 247 NVLLASIENMQYA-VTVDVLHTVFSGFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKET 305
Query: 1140 LDGRSIPRYLLPEHVSCNLRISYSAHTDLNIKFQSHRSRDYTNP 1009
L+G + + + C L +SYS HTDLN+K S +SRDYT P
Sbjct: 306 LEG-----HCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIP 344
>ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 304
Score = 500 bits (1288), Expect = e-139
Identities = 254/286 (88%), Positives = 267/286 (93%), Gaps = 1/286 (0%)
Frame = -3
Query: 1647 MSSTSQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE 1468
MS++SQ QFRYTQTPSKVLHLRNLPWEC EEEL ELC+PFGKIVNTKCNVGANRNQAFVE
Sbjct: 1 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVE 60
Query: 1467 FVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGVE 1288
FVD NQAISMVSYYASSSEPA VRGKTVYIQYSNR EIVNNKS GD+ GNVLLVTIEGVE
Sbjct: 61 FVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVE 120
Query: 1287 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNALDGRSIPRYLL 1108
AGDVSIDVIHLVFSAFGFVHKIATFEK AGFQALIQFTDAETA+SAR+ALDGRSIPRYLL
Sbjct: 121 AGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLL 180
Query: 1107 PEHV-SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTMQPTLGPDGKRKEP 931
P HV SCNLRISYSAH DLNIKFQS+RSRDYTNP LPVN +AIEG +Q +GPDGKRKEP
Sbjct: 181 PAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEP 240
Query: 930 ESNVLLASIENLQYAVTVDVLHTVFSAFGTVQKIAIFDKNGGMQAL 793
+SNVLLASIEN+QYAVTVDVLHTVFSAFGTVQKIAIF+KNG QAL
Sbjct: 241 DSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQAL 286
>ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 500 bits (1288), Expect = e-139
Identities = 254/286 (88%), Positives = 267/286 (93%), Gaps = 1/286 (0%)
Frame = -3
Query: 1647 MSSTSQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVE 1468
MS++SQ QFRYTQTPSKVLHLRNLPWEC EEEL ELC+PFGKIVNTKCNVGANRNQAFVE
Sbjct: 1 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVE 60
Query: 1467 FVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSSGDVAGNVLLVTIEGVE 1288
FVD NQAISMVSYYASSSEPA VRGKTVYIQYSNR EIVNNKS GD+ GNVLLVTIEGVE
Sbjct: 61 FVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVE 120
Query: 1287 AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNALDGRSIPRYLL 1108
AGDVSIDVIHLVFSAFGFVHKIATFEK AGFQALIQFTDAETA+SAR+ALDGRSIPRYLL
Sbjct: 121 AGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLL 180
Query: 1107 PEHV-SCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTMQPTLGPDGKRKEP 931
P HV SCNLRISYSAH DLNIKFQS+RSRDYTNP LPVN +AIEG +Q +GPDGKRKEP
Sbjct: 181 PAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEP 240
Query: 930 ESNVLLASIENLQYAVTVDVLHTVFSAFGTVQKIAIFDKNGGMQAL 793
+SNVLLASIEN+QYAVTVDVLHTVFSAFGTVQKIAIF+KNG QAL
Sbjct: 241 DSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQAL 286
Score = 95.5 bits (236), Expect = 4e-17
Identities = 54/104 (51%), Positives = 70/104 (67%)
Frame = -3
Query: 1320 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETAASARNA 1141
NVLL +IE ++ V++DV+H VFSAFG V KIA FEK QALIQ+ D TA++AR A
Sbjct: 243 NVLLASIENMQYA-VTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 301
Query: 1140 LDGRSIPRYLLPEHVSCNLRISYSAHTDLNIKFQSHRSRDYTNP 1009
L+G + + + C L +SYS HTDLN+K S +SRDYT P
Sbjct: 302 LEG-----HCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVP 340
Score = 93.6 bits (231), Expect = 1e-16
Identities = 66/174 (37%), Positives = 81/174 (46%), Gaps = 31/174 (17%)
Frame = -1
Query: 680 AHNDRSRDYTIPEGMLPMQQAAAPPTSGWQSPQAASGYPGNNYAVGMQGQVPEGQSAPWD 501
A +D+SRDYT+P+ P AA P + WQ+PQAA YPG+ A QVP GQ WD
Sbjct: 329 AFSDKSRDYTVPD---PSLLAAQGPATAWQNPQAAPMYPGS--APAYHTQVPGGQVPAWD 383
Query: 500 PSTQAGRQSFVSVPTTFPGQTFAQPTGPAYHGAGTFPGSAPLHPPGQ------GPTGV-- 345
P+ QA R S+VS P TF Q+ A P PAY A P ++ H P G+
Sbjct: 384 PNLQAVRPSYVSAPGTFHVQSGAAPPMPAYAPAAAMPAASSPHAQSSPMAHNANPMGIAQ 443
Query: 344 -----------SSSSHSMPQYAP------------QSNYRPAGTPPAGQSPYYG 252
S +S S P +P Q N RP G P GQ YYG
Sbjct: 444 PRVPPNANLQSSGASLSAPGSSPLMQTSQAAQGLVQPNARPGGASPPGQH-YYG 496