BLASTX nr result
ID: Coptis25_contig00003708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003708
(1378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275216.1| PREDICTED: translocon-associated protein sub... 254 6e-84
ref|XP_002529245.1| translocon-associated protein, alpha subunit... 247 4e-81
gb|ACV70142.1| putative translocon-associated protein alpha subu... 238 6e-79
ref|XP_003607276.1| Translocon-associated protein subunit alpha ... 237 4e-77
ref|XP_002305486.1| predicted protein [Populus trichocarpa] gi|1... 235 4e-77
>ref|XP_002275216.1| PREDICTED: translocon-associated protein subunit alpha [Vitis
vinifera] gi|147821778|emb|CAN77171.1| hypothetical
protein VITISV_029842 [Vitis vinifera]
gi|297744658|emb|CBI37920.3| unnamed protein product
[Vitis vinifera]
Length = 253
Score = 254 bits (649), Expect(2) = 6e-84
Identities = 132/194 (68%), Positives = 151/194 (77%), Gaps = 4/194 (2%)
Frame = +1
Query: 94 MSIRXXXXXXXXXXSPFLQVVRCXXXXXXXXXXXXX--LGIVDDGVQDFAD--FTPAPGI 261
M+IR SPFLQV RC LGIV + QDF D F+PAPG+
Sbjct: 1 MAIRVFFLAFLLLCSPFLQVARCQSEVEVSEAAEEGGDLGIVGEDAQDFGDGSFSPAPGV 60
Query: 262 DTVTVFPKNSARIVPAGEEAELLVGLNNDGESTVNVIAIKASLHLPFDHRLLVQNLTVQE 441
DTV VFPKNSAR+V AGEEAELLVG+ NDGES++NVIA+KAS+HLPF+H+LLVQNL+ Q
Sbjct: 61 DTVCVFPKNSARLVTAGEEAELLVGMKNDGESSLNVIAVKASVHLPFNHQLLVQNLSTQG 120
Query: 442 FNNATVPLSAQATFPYIFGVSKFLQPGTFDLVGTIIYEIDQTPHQSVFYNGTIEVVEASG 621
FNNA+VP SAQATFPYIF VSK+LQPGTFDLVGTI+YEIDQ P+QSVFYNGTIEVVEA G
Sbjct: 121 FNNASVPASAQATFPYIFAVSKYLQPGTFDLVGTIVYEIDQHPYQSVFYNGTIEVVEAGG 180
Query: 622 FISIESVFLFTLGV 663
F+SIESVFL LG+
Sbjct: 181 FVSIESVFLVFLGI 194
Score = 84.7 bits (208), Expect(2) = 6e-84
Identities = 40/47 (85%), Positives = 44/47 (93%)
Frame = +2
Query: 776 QIQNLSKKTKRSPKVEVGTGTTDASMDEWLQGTAYAQAASNKLKKKK 916
QIQNLSKKTKR+PKVEVGTGTTDAS+DEWLQGTAY Q+ S+K KKKK
Sbjct: 207 QIQNLSKKTKRAPKVEVGTGTTDASLDEWLQGTAYTQSLSSKSKKKK 253
>ref|XP_002529245.1| translocon-associated protein, alpha subunit, putative [Ricinus
communis] gi|223531281|gb|EEF33123.1|
translocon-associated protein, alpha subunit, putative
[Ricinus communis]
Length = 260
Score = 247 bits (630), Expect(2) = 4e-81
Identities = 127/183 (69%), Positives = 146/183 (79%), Gaps = 7/183 (3%)
Frame = +1
Query: 136 SPFLQVVRCXXXXXXXXXXXXX----LGIV-DDGVQDFAD--FTPAPGIDTVTVFPKNSA 294
SP LQV +C LGIV +D DF D F+PAPG++TV VFPKNSA
Sbjct: 19 SPLLQVAKCQSDSEAEIAGSGEEVSDLGIVGEDAHDDFGDGSFSPAPGVNTVCVFPKNSA 78
Query: 295 RIVPAGEEAELLVGLNNDGESTVNVIAIKASLHLPFDHRLLVQNLTVQEFNNATVPLSAQ 474
R+VPAGEE E+LVG+ NDG+S++NVIA+KAS+HLPFDHRLLVQNLT Q FNNATVP SAQ
Sbjct: 79 RVVPAGEETEVLVGVKNDGDSSINVIAVKASVHLPFDHRLLVQNLTAQAFNNATVPASAQ 138
Query: 475 ATFPYIFGVSKFLQPGTFDLVGTIIYEIDQTPHQSVFYNGTIEVVEASGFISIESVFLFT 654
ATFPYIF VSK+LQPG+FDLVGTIIYEIDQ P+QS FYNGTIEVVE+ GF+SIESVFL T
Sbjct: 139 ATFPYIFAVSKYLQPGSFDLVGTIIYEIDQHPYQSTFYNGTIEVVESGGFLSIESVFLVT 198
Query: 655 LGV 663
LG+
Sbjct: 199 LGI 201
Score = 82.8 bits (203), Expect(2) = 4e-81
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +2
Query: 776 QIQNLSKKTKRSPKVEVGTGTTDASMDEWLQGTAYAQAASNKLKKKK 916
QIQNLSKKTKR+PKVEVGTGT D S+DEWLQGTAY Q+ SNK KKKK
Sbjct: 214 QIQNLSKKTKRAPKVEVGTGTRDVSLDEWLQGTAYTQSLSNKSKKKK 260
>gb|ACV70142.1| putative translocon-associated protein alpha subunit [Jatropha
curcas]
Length = 257
Score = 238 bits (608), Expect(2) = 6e-79
Identities = 124/183 (67%), Positives = 141/183 (77%), Gaps = 7/183 (3%)
Frame = +1
Query: 136 SPFLQVVRCXXXXXXXXXXXXX----LGIVDDGVQDFAD--FTPAPGIDTVTVFPKNSAR 297
SP LQV RC LGIV + QDF D F+PAPG++TV VFPKNSAR
Sbjct: 16 SPLLQVARCQSDSDVEVTDAAEEVSDLGIVGEDAQDFGDGTFSPAPGVETVCVFPKNSAR 75
Query: 298 IVPAGEEAELLVGLNNDGESTVNVIAIKASLHLPFDHRLLVQNLTVQEFNNATVPLSAQA 477
+VPAGEEAELLVG+ NDGES++N+ A+KAS+HLPFDHRLLVQNLT Q FNNATVP S QA
Sbjct: 76 VVPAGEEAELLVGIKNDGESSINITAVKASVHLPFDHRLLVQNLTAQAFNNATVPPSTQA 135
Query: 478 TFPY-IFGVSKFLQPGTFDLVGTIIYEIDQTPHQSVFYNGTIEVVEASGFISIESVFLFT 654
TFP F VSK+LQPG FDLVG+IIYEIDQ +QS FYNGTIEVVE+ GF+SIESVFL T
Sbjct: 136 TFPIRFFAVSKYLQPGNFDLVGSIIYEIDQQGYQSTFYNGTIEVVESGGFLSIESVFLVT 195
Query: 655 LGV 663
LG+
Sbjct: 196 LGI 198
Score = 84.0 bits (206), Expect(2) = 6e-79
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2
Query: 776 QIQNLSKKTKRSPKVEVGTGTTDASMDEWLQGTAYAQAASNKLKKKK 916
Q+QNLSKKTKR+PKVEVGTGT DASMDEWLQGTAY Q+ S+K KKKK
Sbjct: 211 QVQNLSKKTKRAPKVEVGTGTRDASMDEWLQGTAYTQSLSSKFKKKK 257
>ref|XP_003607276.1| Translocon-associated protein subunit alpha [Medicago truncatula]
gi|355508331|gb|AES89473.1| Translocon-associated
protein subunit alpha [Medicago truncatula]
Length = 256
Score = 237 bits (605), Expect(2) = 4e-77
Identities = 118/179 (65%), Positives = 141/179 (78%), Gaps = 3/179 (1%)
Frame = +1
Query: 136 SPFLQVVRCXXXXXXXXXXXXXLGIVDDGVQDF---ADFTPAPGIDTVTVFPKNSARIVP 306
SPFLQV R +G+V + DF DF+PAPGIDT++VFPKN A++V
Sbjct: 19 SPFLQVARSDEGVDTTTEEGSDIGVVGEEAPDFDSIGDFSPAPGIDTISVFPKNFAKLVT 78
Query: 307 AGEEAELLVGLNNDGESTVNVIAIKASLHLPFDHRLLVQNLTVQEFNNATVPLSAQATFP 486
AGE+ ELLVG+ N+G+S++NV+AIKAS+HLP DHRLLVQNLT Q FNN +VP SAQATFP
Sbjct: 79 AGEDTELLVGVKNNGDSSLNVVAIKASVHLPVDHRLLVQNLTAQVFNNGSVPASAQATFP 138
Query: 487 YIFGVSKFLQPGTFDLVGTIIYEIDQTPHQSVFYNGTIEVVEASGFISIESVFLFTLGV 663
YIF VSKFLQPG+FDLVGTIIYEID+ P+QS F+NGT+EVVEA G +SIESVFL TLGV
Sbjct: 139 YIFAVSKFLQPGSFDLVGTIIYEIDEQPYQSTFFNGTVEVVEAGGILSIESVFLVTLGV 197
Score = 79.0 bits (193), Expect(2) = 4e-77
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +2
Query: 776 QIQNLSKKTKRSPKVEVGTGTTDASMDEWLQGTAYAQAASNKLKKKK 916
QIQNLSKKTKR+PKVEVGT +TDAS DEWLQGTAY Q+ S+K KKKK
Sbjct: 210 QIQNLSKKTKRAPKVEVGTRSTDASTDEWLQGTAYTQSLSSKSKKKK 256
>ref|XP_002305486.1| predicted protein [Populus trichocarpa] gi|118486855|gb|ABK95262.1|
unknown [Populus trichocarpa]
gi|222848450|gb|EEE85997.1| predicted protein [Populus
trichocarpa]
Length = 256
Score = 235 bits (599), Expect(2) = 4e-77
Identities = 119/182 (65%), Positives = 141/182 (77%), Gaps = 6/182 (3%)
Frame = +1
Query: 136 SPFLQVVRCXXXXXXXXXXXXX----LGIVDDGVQDFAD--FTPAPGIDTVTVFPKNSAR 297
SP LQV C LGIV + QDF D F+PAPG++TV VFPKNSAR
Sbjct: 16 SPLLQVATCQSDSDAEVAETAEEVSDLGIVGEDAQDFGDANFSPAPGVETVCVFPKNSAR 75
Query: 298 IVPAGEEAELLVGLNNDGESTVNVIAIKASLHLPFDHRLLVQNLTVQEFNNATVPLSAQA 477
+V AGEE ELLVG+ NDGE + +IAI+AS+HLPFDH+LLVQNL+ Q FNNATVP SAQA
Sbjct: 76 LVTAGEETELLVGMKNDGELPITIIAIRASVHLPFDHKLLVQNLSAQGFNNATVPASAQA 135
Query: 478 TFPYIFGVSKFLQPGTFDLVGTIIYEIDQTPHQSVFYNGTIEVVEASGFISIESVFLFTL 657
TFPYIFGVSK+LQPG+FDLVGTI+YEIDQ P+QS F+NGTIEVV++ F+S+ESVFL TL
Sbjct: 136 TFPYIFGVSKYLQPGSFDLVGTIVYEIDQHPYQSTFHNGTIEVVDSGVFLSMESVFLITL 195
Query: 658 GV 663
G+
Sbjct: 196 GI 197
Score = 81.3 bits (199), Expect(2) = 4e-77
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2
Query: 776 QIQNLSKKTKRSPKVEVGTGTTDASMDEWLQGTAYAQAASNKLKKKK 916
QIQNLSKKTKR+PKVEVGTGT DASMDEWL+GTA A++ S KLKKKK
Sbjct: 210 QIQNLSKKTKRAPKVEVGTGTRDASMDEWLEGTALAKSQSQKLKKKK 256