BLASTX nr result

ID: Coptis25_contig00003670 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003670
         (932 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318020.1| predicted protein [Populus trichocarpa] gi|1...   164   4e-38
ref|XP_002321566.1| predicted protein [Populus trichocarpa] gi|2...   160   4e-37
emb|CBI15083.3| unnamed protein product [Vitis vinifera]              160   5e-37
ref|XP_003634253.1| PREDICTED: snakin-2-like [Vitis vinifera]         155   1e-35
ref|XP_003549639.1| PREDICTED: snakin-2-like [Glycine max]            149   7e-34

>ref|XP_002318020.1| predicted protein [Populus trichocarpa] gi|118482787|gb|ABK93311.1|
           unknown [Populus trichocarpa]
           gi|118485213|gb|ABK94467.1| unknown [Populus
           trichocarpa] gi|118487438|gb|ABK95547.1| unknown
           [Populus trichocarpa] gi|222858693|gb|EEE96240.1|
           predicted protein [Populus trichocarpa]
          Length = 109

 Score =  164 bits (414), Expect = 4e-38
 Identities = 73/110 (66%), Positives = 89/110 (80%), Gaps = 3/110 (2%)
 Frame = +1

Query: 406 MALRVLILLAVLFFCFADVST---VEGEMAGDVSQVVVKAANKRLMQTVDCGGQCDKRCS 576
           MA+R L+ + VL FC A+VS+   ++ E+   V Q+VV+  N+RLMQ +DCGG C +RCS
Sbjct: 1   MAVRSLLAMMVLLFCLAEVSSDLKIDTEIP-QVFQLVVRGGNRRLMQDIDCGGLCKQRCS 59

Query: 577 VHSRPNLCKRACGTCCVRCKCVPPGTSGNREMCGSCYMDMKTHGNKTKCP 726
           +HSRPNLC RACGTCCVRCKCVPPGTSGNRE+CG+CY DM THGNKTKCP
Sbjct: 60  LHSRPNLCNRACGTCCVRCKCVPPGTSGNREVCGTCYTDMTTHGNKTKCP 109


>ref|XP_002321566.1| predicted protein [Populus trichocarpa] gi|222868562|gb|EEF05693.1|
           predicted protein [Populus trichocarpa]
          Length = 109

 Score =  160 bits (405), Expect = 4e-37
 Identities = 72/109 (66%), Positives = 85/109 (77%), Gaps = 2/109 (1%)
 Frame = +1

Query: 406 MALRVLILLAVLFFCFADVSTVEGEMAG--DVSQVVVKAANKRLMQTVDCGGQCDKRCSV 579
           MA+R L+ L V  FC A+VS+      G   V Q+VV+  N+RLMQ +DCGG C +RCS+
Sbjct: 1   MAVRSLLALMVFVFCLAEVSSDLKIDTGILHVGQLVVRGGNRRLMQDIDCGGLCKQRCSL 60

Query: 580 HSRPNLCKRACGTCCVRCKCVPPGTSGNREMCGSCYMDMKTHGNKTKCP 726
           HSRPN+C RACGTCCVRCKCVPPGTSGNRE+CG+CY DM THGNKTKCP
Sbjct: 61  HSRPNVCTRACGTCCVRCKCVPPGTSGNREVCGTCYTDMTTHGNKTKCP 109


>emb|CBI15083.3| unnamed protein product [Vitis vinifera]
          Length = 111

 Score =  160 bits (404), Expect = 5e-37
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 3/108 (2%)
 Frame = +1

Query: 412 LRVLILLAVLFFCFADVST---VEGEMAGDVSQVVVKAANKRLMQTVDCGGQCDKRCSVH 582
           LR+L++   L    A +S+   +EGE    VSQVVV+  N+RLMQ +DCGG C  RCS+H
Sbjct: 4   LRLLLVFVALLVFLAQISSDFNIEGEEMPFVSQVVVRGGNRRLMQDIDCGGLCKDRCSLH 63

Query: 583 SRPNLCKRACGTCCVRCKCVPPGTSGNREMCGSCYMDMKTHGNKTKCP 726
           SRPN+C RACGTCCVRCKCVPPGTSGNRE+CG CY DM THGNKTKCP
Sbjct: 64  SRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMTTHGNKTKCP 111


>ref|XP_003634253.1| PREDICTED: snakin-2-like [Vitis vinifera]
          Length = 112

 Score =  155 bits (392), Expect = 1e-35
 Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 4/109 (3%)
 Frame = +1

Query: 412 LRVLILLAVLFFCFADVST---VEGEMAGDVSQ-VVVKAANKRLMQTVDCGGQCDKRCSV 579
           LR+L++   L    A +S+   +EGE    VSQ VVV+  N+RLMQ +DCGG C  RCS+
Sbjct: 4   LRLLLVFVALLVFLAQISSDFNIEGEEMPFVSQAVVVRGGNRRLMQDIDCGGLCKDRCSL 63

Query: 580 HSRPNLCKRACGTCCVRCKCVPPGTSGNREMCGSCYMDMKTHGNKTKCP 726
           HSRPN+C RACGTCCVRCKCVPPGTSGNRE+CG CY DM THGNKTKCP
Sbjct: 64  HSRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMTTHGNKTKCP 112


>ref|XP_003549639.1| PREDICTED: snakin-2-like [Glycine max]
          Length = 115

 Score =  149 bits (377), Expect = 7e-34
 Identities = 68/115 (59%), Positives = 83/115 (72%), Gaps = 8/115 (6%)
 Frame = +1

Query: 406 MALRVLILLAVLFF-CFADVST-------VEGEMAGDVSQVVVKAANKRLMQTVDCGGQC 561
           MALR L+++ +L   C A VS+        + E+      ++V+  N+RLMQ +DCGG C
Sbjct: 1   MALRELLMMGILLLVCLAKVSSDVNMQKEEDEELRFPNHPLIVRDGNRRLMQDIDCGGLC 60

Query: 562 DKRCSVHSRPNLCKRACGTCCVRCKCVPPGTSGNREMCGSCYMDMKTHGNKTKCP 726
             RCS HSRPN+C RACGTCCVRCKCVPPGTSGNRE+CG+CY DM THGNKTKCP
Sbjct: 61  KTRCSAHSRPNVCNRACGTCCVRCKCVPPGTSGNRELCGTCYTDMITHGNKTKCP 115


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