BLASTX nr result

ID: Coptis25_contig00003669 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003669
         (888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308886.1| predicted protein [Populus trichocarpa] gi|2...    77   7e-12
ref|XP_003632740.1| PREDICTED: uncharacterized protein LOC100243...    72   1e-10
ref|XP_002322621.1| predicted protein [Populus trichocarpa] gi|2...    69   1e-09
ref|XP_002513029.1| protein with unknown function [Ricinus commu...    68   2e-09
ref|XP_003554126.1| PREDICTED: uncharacterized protein LOC100808...    67   7e-09

>ref|XP_002308886.1| predicted protein [Populus trichocarpa] gi|222854862|gb|EEE92409.1|
           predicted protein [Populus trichocarpa]
          Length = 154

 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
 Frame = -3

Query: 622 VVYISNPMKVKTSASDFRALVQELTGQDSDIGDASRY-SSEMEGINEGVVLGTVPSEGME 446
           VVYISNPMK K SAS+FRALVQELTGQDS++ D S++  S+    + G    TVP+    
Sbjct: 33  VVYISNPMKFKASASEFRALVQELTGQDSELPDPSKFVDSDGHDRDVGGNYQTVPNASKS 92

Query: 445 ISNDREEVVQHVPGVEPYGETIRTLDSTFEQFEPFDRVFSPFMIENFNGLIPSGLLHD 272
           +  D     Q VP  +P        D+ FE    FD VF P M+E+ +  +PS L ++
Sbjct: 93  VVVDGGH-AQEVPIEDPSQVQPERQDAPFES---FDDVFMPQMLEDISEKMPSKLWYE 146


>ref|XP_003632740.1| PREDICTED: uncharacterized protein LOC100243497 [Vitis vinifera]
          Length = 143

 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 48/117 (41%), Positives = 67/117 (57%)
 Frame = -3

Query: 622 VVYISNPMKVKTSASDFRALVQELTGQDSDIGDASRYSSEMEGINEGVVLGTVPSEGMEI 443
           VVYI NP  VK   S+FRALVQELTGQD+DI D + +    E I++      VP    ++
Sbjct: 28  VVYIGNPRMVKVKESEFRALVQELTGQDADISDPTVF----EEIHDVGGNQKVP----DV 79

Query: 442 SNDREEVVQHVPGVEPYGETIRTLDSTFEQFEPFDRVFSPFMIENFNGLIPSGLLHD 272
           +N+  E+   VP V+   E  +  D   EQ    D VF+P ++ENF GL+ S L ++
Sbjct: 80  ANNENELELDVPPVDRGDEPPQMSDIPMEQ---LDDVFTPQLLENFTGLLQSTLWYE 133


>ref|XP_002322621.1| predicted protein [Populus trichocarpa] gi|222867251|gb|EEF04382.1|
           predicted protein [Populus trichocarpa]
          Length = 156

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 47/112 (41%), Positives = 60/112 (53%)
 Frame = -3

Query: 622 VVYISNPMKVKTSASDFRALVQELTGQDSDIGDASRYSSEMEGINEGVVLGTVPSEGMEI 443
           VVYISNPMK K SAS FRALVQELTGQDS++ D ++   + +    G    TV +    +
Sbjct: 31  VVYISNPMKFKISASGFRALVQELTGQDSELPDPTKIVDD-DDHGVGGNYRTVSNASKTV 89

Query: 442 SNDREEVVQHVPGVEPYGETIRTLDSTFEQFEPFDRVFSPFMIENFNGLIPS 287
            +D       VP  +P  E           F  FD VF P M+EN  G++PS
Sbjct: 90  VDD--HCALEVPTKDPSQEQPPARQDA--PFGSFDDVFMPQMLENVAGIMPS 137


>ref|XP_002513029.1| protein with unknown function [Ricinus communis]
           gi|223548040|gb|EEF49532.1| protein with unknown
           function [Ricinus communis]
          Length = 143

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 51/122 (41%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
 Frame = -3

Query: 622 VVYISNPMKVKTSASDFRALVQELTGQDSDIGDASRYSSEMEGINEGVVLGTVPSEGMEI 443
           VVYIS+PMKV+TSAS FRALVQELTG+DS   DA+R+     G  E     T P      
Sbjct: 24  VVYISSPMKVETSASKFRALVQELTGKDS---DAARFMDVNNGA-ENYSTETTPDRSRAA 79

Query: 442 SNDREEVVQHVPGVEPYGET--IRTLDSTFEQFEPFDRVFSPFMIENFNGLIPSGLLHDI 269
           S++   V+  +P +  Y E     + DS    F+PFDR F P M  +F  +  S   H+ 
Sbjct: 80  SDEHGSVL--LPLMSSYNEPSFSSSPDSDSSIFDPFDR-FLPPMEGSFMSMFQSNFPHES 136

Query: 268 CQ 263
            Q
Sbjct: 137 FQ 138


>ref|XP_003554126.1| PREDICTED: uncharacterized protein LOC100808231 [Glycine max]
          Length = 168

 Score = 66.6 bits (161), Expect = 7e-09
 Identities = 52/137 (37%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
 Frame = -3

Query: 622 VVYISNPMKVKTSASDFRALVQELTGQDSDI-GDASRY-------SSEMEGINEG----- 482
           VVYISNPMK+KTSAS+FRALVQELTGQD++   D SR+       SS +E I E      
Sbjct: 34  VVYISNPMKIKTSASEFRALVQELTGQDAESPPDPSRFHGHHPDSSSSVENIEEEEEEDN 93

Query: 481 -------VVLGTVPSEGMEISNDREEVVQHVPGVEPYGETIRTLDSTFEQFEPFDRVFSP 323
                  V   T   E   +     +  QH P          +++S   Q    D VF+P
Sbjct: 94  IHRVNCVVPPMTATDEISLLIGCCNQNGQHQPS---------SMESNNFQLLDDDDVFTP 144

Query: 322 FMIENFNGLIPSGLLHD 272
            MIEN + L+P+ + ++
Sbjct: 145 QMIENISALLPASVFYE 161


Top