BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003664
         (4782 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   666   0.0  
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...   661   0.0  
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   656   0.0  
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   653   0.0  
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   641   0.0  

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  666 bits (1718), Expect = 0.0
 Identities = 405/1206 (33%), Positives = 620/1206 (51%), Gaps = 23/1206 (1%)
 Frame = +3

Query: 1221 ITSWNCRGMGSSEAIRSVLALVKKFDPDVLFLVETKLLYKKLKRVQNKLKYPQVFAVDPV 1400
            I SWNCRGMGS  A+ ++  L+   +P ++FL ETKL   +++ V+ KLK+  + AVD  
Sbjct: 4    ILSWNCRGMGSPSALSALRRLLASENPQIVFLSETKLKSYEMESVKKKLKWEHMVAVDCE 63

Query: 1401 G----RSGGLAVLYKDNISFSVVDGNKNAISGTFLNYLSNVSWHVSFIYGDPVAYKRIVV 1568
            G    R GGLA+L++  I   V+  + N I    +   +   W  + IYG P    +   
Sbjct: 64   GECRKRRGGLAMLWRSEIKVQVMSMSSNHID-IVVGEEAQGEWRFTGIYGYPEEEHKDKT 122

Query: 1569 WNYLRDLRNVLSGPWLILGDFNAISSLSEKEGGNPTPSRYIDEFVSLMEDLEMADLGYHG 1748
               L  L      PWL  GDFN +   SEK+GG+   SR  D F + ME+    DLG+ G
Sbjct: 123  GALLSALARASRRPWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVG 182

Query: 1749 PAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVALAVYVSGKVDS 1928
              FTW+NNR G ANI+ER+DR VAN  W   FP   V H+    SDHV +   V G   +
Sbjct: 183  YEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSA 242

Query: 1929 GP-----KPFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFILNSKFVELQSSLRVWNKTY 2093
                   K FRF  MW ++    +V+K  W   + G+ + I         + L  W+K  
Sbjct: 243  ATRTKKSKRFRFEAMWLREGESDEVVKETW---MRGTDAGI---NLARTANKLLSWSKQK 296

Query: 2094 FGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESYWKQHSNTSMVLE 2273
            FG++  +I+  +  +  L+    S+  ++ ++ +   + EL K+EE YW Q S    +  
Sbjct: 297  FGHVAKEIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKS 356

Query: 2274 ADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRPSPNLALLP 2453
             D NTKFFH  AS R +RN++ +I+ EAG W     +V + F   FE+ F+   N     
Sbjct: 357  GDKNTKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNC---- 412

Query: 2454 SLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMFYQKYWRLV 2633
             +D IL++  P I+      L     R E+   L  M   KAPGPDG  A+FYQ +W  +
Sbjct: 413  EMDPILNIVKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQHFWDTI 472

Query: 2634 GEDLV-RMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSYKVISKILA 2810
            GED+  +++    N    G  +NQT+I LIPK         +RPISLCNV YK+++K+LA
Sbjct: 473  GEDVTTKVLNMLNNVDNIGA-VNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLA 531

Query: 2811 NRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALKVDMSKAYD 2990
            NR++ +LP  I  +Q  F P R I DN+ V +E  H +++ K  K G   LK+DMSKAYD
Sbjct: 532  NRMKMVLPMVIHESQSGFVPGRLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYD 591

Query: 2991 RVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLRQGDPLSPY 3170
            RV+W  L  +M+KLGF +++  LV  C+++ +++VL+NG P R   P RGLRQGDPLSP+
Sbjct: 592  RVEWCFLENMMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPF 651

Query: 3171 LFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPFEVHKIKKI 3350
            LF++  E LS           I G+KI  R   +SH+ +ADD ++F + +  EV  +  I
Sbjct: 652  LFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSLLFIRATEEEVENVMDI 711

Query: 3351 MDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSPIIFSTSKI 3530
            +  Y   +GQ +N++KS + +S     D    +   L  + +   +KYLG P    +SK 
Sbjct: 712  LSTYEAASGQKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTFIGSSKK 771

Query: 3531 QDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDITSKMDRAC 3710
            + F  + D+V   +  W+GK LSQAG+ +L++AVAQA P Y+M  F +P  I   +++ C
Sbjct: 772  RVFQAIQDRVWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEKMC 831

Query: 3711 RNFWW-NNADSNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKVVSE-KSLWS 3884
            RNF+W    +   +    W+KL +PK EGGLG R+  +FN ALL K  W+++++  SL +
Sbjct: 832  RNFFWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMA 891

Query: 3885 DLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVKFWTDQWIK 4064
             ++  KY         A  S  +S  C+ +   +  ++ G    IGDG     W D W+ 
Sbjct: 892  RVIKGKYFPRSNF-LEARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVP 950

Query: 4065 VMDK-------PCSLIDMXXXXXXXXXXXXXXXEFINP-DGSWDCVGLRALVPSLVLNXX 4220
             +++         S  D                E +N     W+   ++ +  +L     
Sbjct: 951  SLERYSIAATEGVSEDDGPQKVCELISNDRWNVELLNTLFQPWESTAIQRIPVAL----- 1005

Query: 4221 XXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQCSSAQQSHD-FMIIWKLKI 4397
                      D+ MW  + NG+F+V+SA+      +   G  +S   +   +  IWK KI
Sbjct: 1006 ------QKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKI 1059

Query: 4398 PARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWTSRLWFSS 4577
            P +VKLF WK  +N L+    + +  + +D  C  C    E  +HL + C  +SR W+ S
Sbjct: 1060 PPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYIS 1119

Query: 4578 WLGLRVDCDAFETQNWFNYFRSRDSSYENLSLYA--FSLMYNIWWHRNECRFSFMKPNFI 4751
               LR+     E  ++  +  S   ++++   +A  + + +NIW  RN+  F   K  F 
Sbjct: 1120 --PLRIHTGNIEAGSFRIWVESLLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQ 1177

Query: 4752 SVLEKA 4769
             V+E+A
Sbjct: 1178 EVVERA 1183


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score =  661 bits (1705), Expect = 0.0
 Identities = 376/1124 (33%), Positives = 584/1124 (51%), Gaps = 10/1124 (0%)
 Frame = +3

Query: 1227 SWNCRGMGSSEAIRSVLALVKKFDPDVLFLVETKLLYKKLKRVQNKLKYPQVFAVDPVGR 1406
            +WNCRG+G++  ++ + AL++K    ++FL ET+   +K+ R++ KL +     V   G+
Sbjct: 640  AWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEGK 699

Query: 1407 SGGLAVLYKDNISFSVVDGNKNAISGTFLNYLSNVSWHVSFIYGDPVAYKRIVVWNYLRD 1586
            SGGLA+ + +++S  V D NK  I            WH++F+YG+P    R  +W+ LR 
Sbjct: 700  SGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMWSLLRT 759

Query: 1587 LRNVLSGPWLILGDFNAISSLSEKEGGNPTPSRYIDEFVSLMEDLEMADLGYHGPAFTWS 1766
            +R   + PW+++GDFN      E    NP     +  F   + D ++ DLG+ G   T+ 
Sbjct: 760  IRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVPHTYD 819

Query: 1767 NNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDH--VALAVYVSGKVDSGPKP 1940
            N R G  N++ R+DR VA+ +W +LFP   V H+ +P SDH  + L   V        K 
Sbjct: 820  NRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKC 879

Query: 1941 FRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFILNSKFVELQSSLRVWNKTYFGNIFSQIK 2120
              +  +W ++P  + VI+  W      +    +N     + S+LR W+KT   N+  +++
Sbjct: 880  LHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKTKVKNVGKELE 939

Query: 2121 EAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESYWKQHSNTSMVLEADNNTKFFH 2300
            +A   L  L+A   S+     I+   +H+ E+  +EE  W Q S  + + E D NT+FFH
Sbjct: 940  KARKKLEDLIA---SNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFH 996

Query: 2301 SNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRPSPNLALLPSLDIILDLF 2480
            S A +R ++N I K++ E G   ++ S +       F+  ++  P+L    + + +  LF
Sbjct: 997  SRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSL----NPESVTRLF 1052

Query: 2481 DPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMFYQKYWRLVGEDLVRMVQ 2660
               ++ + N+ L +     EI + +  +G LK+P PDGFPA FYQ+ W  +  D++  V+
Sbjct: 1053 QEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAVR 1112

Query: 2661 CFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSYKVISKILANRLRSLLPKF 2840
             FF +G     +N T I LIPK D P     YRPISLCNV YKV+SK L NRLR +L   
Sbjct: 1113 NFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDL 1172

Query: 2841 ISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALKVDMSKAYDRVDWGALLAI 3020
            +S  Q AF   R I DN  +  E  H I++ KK      A K+D+SKAYDRVDW  L   
Sbjct: 1173 VSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELA 1232

Query: 3021 MVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLRQGDPLSPYLFIILTEALS 3200
            + KLGF+ +W++ +  C++TV+Y+V  NG+ LR+  P RGLRQG+PLSP+LF+ + + LS
Sbjct: 1233 LNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLS 1292

Query: 3201 RXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPFEVHKIKKIMDLYCNGTGQ 3380
                       ++ +KI R+AP +S++L+ADD ++F K    E   +K+++  Y  GTGQ
Sbjct: 1293 LLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQ 1352

Query: 3381 MVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSPIIFSTSKIQDFSFLLDKV 3560
            ++N  K +ILF   +     E I +TLQV   +  D+YLG P          F  L  K+
Sbjct: 1353 LINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKI 1412

Query: 3561 RGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDITSKMDRACRNFWWNNADS 3740
               V  W    LS  GK IL++AV QA P+Y M  F  P  +  ++ +  RNFWW  AD+
Sbjct: 1413 AKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWW-GADN 1471

Query: 3741 --NAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKVVS-EKSLWSDLMLAKYEK 3911
                 H   WD L   K  GGLGFRD  LFN ALL +  W+++    SL + ++ AKY  
Sbjct: 1472 GRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFP 1531

Query: 3912 DLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVKFWTDQWI--KVMDKPCS 4085
              +L      S+  SP   G++     ++ G IW IG+G SV+ W D WI   +  +P S
Sbjct: 1532 HGSL-TDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRPVS 1590

Query: 4086 LIDMXXXXXXXXXXXXXXXEFINPDGSWDCVGLRALVPSLVLN-XXXXXXXXXXXXDKLM 4262
                               + I  DG+WD   +      +  +             D + 
Sbjct: 1591 --------SKANCRLKWVSDLIAEDGTWDSAKINQYFLKIDADIIQKICISARLEEDFIA 1642

Query: 4263 WNPAVNGRFSVKSAFNFIKALE--SNIGQCSSAQQSHDFMIIWKLKIPARVKLFLWKIAN 4436
            W+P   GRFSV+SA+     L   +N    SS++ +  + +IWK  +P +V++F W++A+
Sbjct: 1643 WHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAWRVAS 1702

Query: 4437 NLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWTSRLW 4568
            N L+T    ++ ++   + C  C+   ED  H    C   + LW
Sbjct: 1703 NSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLW 1746


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  656 bits (1693), Expect = 0.0
 Identities = 395/1191 (33%), Positives = 611/1191 (51%), Gaps = 22/1191 (1%)
 Frame = +3

Query: 1221 ITSWNCRGMGSSEAIRSVLALVKKFDPDVLFLVETKLLYKKLKRVQNKLKYPQVFAVDPV 1400
            + SWNC+G+ +   + ++ +L  +  P+++F++ET +  + L++++ +  +     +   
Sbjct: 3    LLSWNCQGLANPWTVNALHSLCWRDRPNIVFVMETMVDSQVLEKIRKRCGFMNGLCLSSN 62

Query: 1401 GRSGGLAVLYKDNISFSVVDGNKNAISGTFLNYLSNVSWHVSFIYGDPVAYKRIVVWNYL 1580
            G SGG+  L+ + +  +V   + + I    L+   N  W+   IYG P    + + W+ L
Sbjct: 63   GNSGGMG-LWWNEMDVTVESFSAHHIHAVVLDENKNPIWNAMGIYGWPETSNKHLTWSLL 121

Query: 1581 RDLRNVLSGPWLILGDFNAISSLSEKEGGNPTPSRYIDEFVSLMEDLEMADLGYHGPAFT 1760
            R L+   S P L  GDFN I+S+ EKEGG P   R +D F  +++D  + DLGY G  FT
Sbjct: 122  RRLKQQCSLPVLFFGDFNEITSIEEKEGGAPRCERVMDAFREVIDDCAVKDLGYVGNRFT 181

Query: 1761 WSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVALAVY--VSGKVDSGP 1934
            W      +  IRER+DR++AN EW + FP   V H+    SDH  L +   V+     G 
Sbjct: 182  WQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVNDSFRRGN 241

Query: 1935 KPFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFILNSKFVELQSSLRVWNKTYFGNIFSQ 2114
            K F+F  MW     C  +++  W    +GS    + ++  E+  SL  W    FGN+  +
Sbjct: 242  KLFKFEAMWLSKEECGKIVEEAW----NGSAGEDITNRLDEVSRSLSTWATKTFGNLKKR 297

Query: 2115 IKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESYWKQHSNTSMVLEADNNTKF 2294
             KEA + L+ L         L + + +   + E+++ EESYW   +  + + + D NTK+
Sbjct: 298  KKEALTLLNGLQQRDPDASTLEQCRIVSGDLDEIHRLEESYWHARARANEIRDGDKNTKY 357

Query: 2295 FHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRPSPNLALLPSLDIILD 2474
            FH  AS R+RRN+I+++  E G+W   R E+       FE  F     +    ++++ L+
Sbjct: 358  FHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFEGLFATDSPV----NMELALE 413

Query: 2475 LFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMFYQKYWRLVGEDLVRM 2654
                C+S   N +L   PS  E+++ L +M   KAPG DG  A+F+QK+W ++G D++  
Sbjct: 414  GLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQKFWHILGSDVISF 473

Query: 2655 VQCFFN-TGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSYKVISKILANRLRSLL 2831
            VQ ++   G  G+ +N+T I LIPK D P     +RPISLC V YK++SK LANRL+ +L
Sbjct: 474  VQSWWRGMGDLGV-VNKTCIVLIPKCDHPQSMKDFRPISLCTVLYKILSKTLANRLKVIL 532

Query: 2832 PKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALKVDMSKAYDRVDWGAL 3011
            P  ISPNQ AF P+R I DN  V  EI H +KR   NK G+ ALK+DMSKAYDRV+W  L
Sbjct: 533  PAIISPNQSAFVPRRLITDNALVAFEIFHAMKRKDANKNGVCALKLDMSKAYDRVEWCFL 592

Query: 3012 LAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLRQGDPLSPYLFIILTE 3191
              +M K+GF   WI  V  CIS+V +   +NG    +++P RGLRQGDP+SPYLF++  +
Sbjct: 593  ERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSRGLRQGDPISPYLFLLCAD 652

Query: 3192 ALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPFEVHKIKKIMDLYCNG 3371
            A S           I G +I R AP VSH+ +ADD I+F K S  E   +  I+  Y   
Sbjct: 653  AFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILFTKASVQECSMVADIISKYERA 712

Query: 3372 TGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSPIIFSTSKIQDFSFLL 3551
            +GQ VNL K+ ++FS    R+ + AI++ L V+ +  ++KYLG P I   SK   F+ + 
Sbjct: 713  SGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIK 772

Query: 3552 DKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDITSKMDRACRNFWWNN 3731
            +++   +  W+ KLLS+ GK +L+++VAQA P Y MS F LP  +  ++      FWW +
Sbjct: 773  ERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDEIHSLLARFWWGS 832

Query: 3732 ADSN-AIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKV-VSEKSLWSDLMLAKY 3905
            +D+N  +H  +WD LC PK+ GGLGFRD H FN +LL K  W++   +++L   L+ A+Y
Sbjct: 833  SDTNRKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARY 892

Query: 3906 EKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVKFWTDQWI-------- 4061
             K   L   A      S   R +   K  +  G  W +G G  ++ W D WI        
Sbjct: 893  FKSSEL-LEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWILGEGAHMV 951

Query: 4062 -------KVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDGSWDCVGLRALVPSLVLNXX 4220
                    +  K C LID+               E       W+      LV S+ L+  
Sbjct: 952  PTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVE-----EEWE------LVLSIPLS-- 998

Query: 4221 XXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQCSSAQQSHD-FMIIWKLKI 4397
                      D   W P+ NG FSV+S +   +       Q    ++  + +  +W+L+ 
Sbjct: 999  -----RFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERETELWRRVWQLQG 1053

Query: 4398 PARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWTSRLW-FS 4574
            P ++  FLW+     L+    L   H+ VD  C  C +  E   H  F C +   +W  S
Sbjct: 1054 PPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVS 1113

Query: 4575 SWLGLRVDCDAFETQNWFNYFRSRDSSYENLSLYAFSLMYNIWWHRNECRF 4727
             +  L ++           +     +  E  ++ +F  M+  W+ RN+  F
Sbjct: 1114 GFASLMMNAPLSSFSERLEWLAKHATKEEFRTMCSF--MWAGWFCRNKLIF 1162


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  653 bits (1685), Expect = 0.0
 Identities = 402/1195 (33%), Positives = 618/1195 (51%), Gaps = 23/1195 (1%)
 Frame = +3

Query: 1209 EADMITSW--NCRGMGSSEAIRSVLALVKKFDPDVLFLVETKLLYKKLKRVQNKLKYPQV 1382
            E + + +W  NCRG+GS+  +  +  LVK   P ++FL ETK+  K+ + +   L +   
Sbjct: 2    EPNKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGS 61

Query: 1383 FAVDPVGRSGGLAVLYKDNISFSVVDGNKNAISGTFLNYLSNVSWHVSFIYGDPVAYKRI 1562
            FAV   G SGGLA+ +    + S+   N + I    ++      W +SF+YG+P    R 
Sbjct: 62   FAVSCEGLSGGLALFWTTAYTVSLRGFNSHFID-VLVSTEELPPWRISFVYGEPKRELRH 120

Query: 1563 VVWNYLRDLRNVLSGPWLILGDFNAISSLSEKEGGNPTPSRYIDEFVSLMEDLEMADLGY 1742
              WN LR L +   GPWL  GDFN +  L E  G       ++  F S ++D  + DLG+
Sbjct: 121  FFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGF 180

Query: 1743 HGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVALAVYVSGKV 1922
             GP FTWSN +   +N + R+DR VAN E+   F    V++V T SSDH A+++ +S + 
Sbjct: 181  VGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRN 240

Query: 1923 DSGPK-----PFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFI-LNSKFVELQSSLRVWN 2084
                +      FRF   W +     +V+++ W+    G      + S   ++  SL+ W+
Sbjct: 241  HGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWS 300

Query: 2085 KTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESYWKQHSNTSM 2264
            K  FG++  +I + E  L SL   PV+D+V+ E K I++ + EL++KEE   +Q S    
Sbjct: 301  KASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDW 360

Query: 2265 VLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRPSPNLA 2444
            + E D NT FFH+ AS RRR N I ++  + G    S+  + +     +E+ F   P   
Sbjct: 361  LREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEP--- 417

Query: 2445 LLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMFYQKYW 2624
               S++ +LD     +    N  L +  +  EI+  L  MG  KAPGPDGFPA+FYQ +W
Sbjct: 418  -CDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHW 476

Query: 2625 RLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSYKVISKI 2804
             ++ E +   V+ F         L  + + LIPK++  SH S +RPISLCNV YK+ SK+
Sbjct: 477  GILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKV 536

Query: 2805 LANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALKVDMSKA 2984
            LANRL+  LP  +S  Q AF P R I D+  V +E +H I++ + NK   FALK+DM KA
Sbjct: 537  LANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRK-QHNKNPFFALKIDMMKA 595

Query: 2985 YDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLRQGDPLS 3164
            YDRV+W  L   + KLGFS  WI  V  C+S+V+Y V +NG   + + P RG+RQGDP+S
Sbjct: 596  YDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPIS 655

Query: 3165 PYLFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPFEVHKIK 3344
            PYLF++ TE LS          ++ GIK  R  P +SH+L+ADD I F K     V  +K
Sbjct: 656  PYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALK 715

Query: 3345 KIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSPIIFSTS 3524
              +  YC+ +GQ +NL KS+I F        + ++   LQV    ++D YLG P     +
Sbjct: 716  NTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLA 775

Query: 3525 KIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDITSKMDR 3704
                F FL +++   V+ W  + LS+AG   +++AVAQA P Y MS F +P+ I  KM  
Sbjct: 776  TTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKT 835

Query: 3705 ACRNFWWNNAD-SNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKVVSE-KSL 3878
               + WW   D    +H  +W  L  PK  GG+GFR+   FN A+L +  W+++++  SL
Sbjct: 836  CIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSL 895

Query: 3879 WSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVKFWTDQW 4058
             S ++  +Y  + +    A P S  S   R L   +  +  G  W +GDG ++K ++D W
Sbjct: 896  CSRVLKGRYFPNSSFWEAAQPKS-PSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNW 954

Query: 4059 IKVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDG-SWDCVGLRALVP-SLVLNXXXXXX 4232
            I    +P  +  +                 +N D   WD   +R+L P  +         
Sbjct: 955  IPGF-RPQLVTTLSPFPTDATVSC-----LMNEDARCWDGDLIRSLFPVDIAKEILQIPI 1008

Query: 4233 XXXXXXDKLMWNPAVNGRFSVKSAFNFIK-----ALESNIGQCSSA---QQSHDFMIIWK 4388
                  D   W     G +SV+SA+N  +     A +SN G+  ++   +   D+  +WK
Sbjct: 1009 SRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWK 1068

Query: 4389 LKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWTSRLW 4568
            +  P ++K+ LW+ A+  L+TG  L + H+P  + CVFCN   +  +H+F  CP+ +++W
Sbjct: 1069 INAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIW 1127

Query: 4569 --FSSWLGLRVDCDAFET-QNWFNYFRSRDSSYENLSLYAFSLMYNIWWHRNECR 4724
                    +++  + F T + W   F  R SS+ N  L      ++IW  RN  +
Sbjct: 1128 EEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAV--TFWHIWEARNNTK 1180


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  641 bits (1654), Expect = 0.0
 Identities = 411/1208 (34%), Positives = 619/1208 (51%), Gaps = 31/1208 (2%)
 Frame = +3

Query: 1221 ITSWNCRGMGSSEAIRSVLALVKKFDPDVLFLVETKLLYKKLKRVQNKLKYPQVFAVDPV 1400
            I  WN RG      +       K  +  +L L ETK      +   +   +    ++  +
Sbjct: 3    IAFWNVRGGCRKNVMEECSDFCKNNNIKILMLCETKSQSPPSQLAVSAAGFLHHDSIPAM 62

Query: 1401 GRSGGLAVLYKDNI--SFSVVDGNKN----AISGTFLNYLSNVSWHVSFIYGDPVAYKRI 1562
            G SGGL + ++D I   FS+V   K+    A S   LN   N+ +   FIY       + 
Sbjct: 63   GYSGGLWLFWRDCILNPFSLVVIYKSVRFIACSINLLN--QNLQFVAIFIYAPAQKEFKS 120

Query: 1563 VVWNYLRDLRNVLSGPWLILGDFNAISSLSEKEGGNPTPSRYIDEFVSLMEDLEMADLGY 1742
              W+ L    + LS P++ILGDFN I+S S+K GG P  S       +L   ++  ++ +
Sbjct: 121  SFWDELIAYVSSLSFPFIILGDFNEINSPSDKLGGAPFSSSRAYYMQNLFSQVDCTEISF 180

Query: 1743 HGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVALAVYVSGKV 1922
             G  FTW   + G  NI ER+DR VA+  WL LFP   + H    SSDH  +++      
Sbjct: 181  TGQIFTWRKKKDGPNNIHERLDRGVASTSWLMLFPHAFLKHHIFTSSDHCQISLEYLANN 240

Query: 1923 DSGPKPFRFHEMWTKDPSCMDVIKHCWQTHVHGSP--SFILNSKFVELQSSLRVWNKTYF 2096
             S   PFRF +MW        ++K  W T  +GS   +F+   K V++ S  + WNKT F
Sbjct: 241  KSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINS--KEWNKTQF 298

Query: 2097 GNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHIL----ELYKKEESYWKQHSNTSM 2264
            GNIF Q+++ +  L  +    + D     +K  +E  L    +L +   +YWKQ   +  
Sbjct: 299  GNIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYNTTYWKQKCKSDF 358

Query: 2265 VLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRPSPNLA 2444
            ++  D N+KF+H++AS R+ RN I +   +    +T    + +E   +F+  F  +P   
Sbjct: 359  MVLGDTNSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLIEKEITLAFKKRFISNPACK 418

Query: 2445 LLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMFYQKYW 2624
               ++D   +L  P +S ++N  LT   S  EI+  +  +   K+PGPDGFP  F+QKYW
Sbjct: 419  FNQNVDF--NLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYW 476

Query: 2625 RLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSYKVISKI 2804
             L+G+ + R VQ FF++G     +N T+++LIPK+D P + +H+RPISLC+  YKVISKI
Sbjct: 477  TLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKI 536

Query: 2805 LANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALKVDMSKA 2984
            + NRL+  L K I P QGAF P+R I DNI + HE+ H  K  K  + G  A+K+DM KA
Sbjct: 537  ITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKN-KTGRGGWIAIKLDMEKA 595

Query: 2985 YDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLRQGDPLS 3164
            YDR++W  +   M K+GFS  WI  +  CIS+  ++VL+NG P     P RG+RQGDPLS
Sbjct: 596  YDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFSVLVNGIPGERFFPSRGIRQGDPLS 655

Query: 3165 PYLFIILTEALSR-XXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPFEVHKI 3341
            PYLFI+  E L+R           + G+ I R    +  + +ADD ++F K +    HKI
Sbjct: 656  PYLFILCAELLAREFSKACHEPGKLIGVPIGRTRTRIPFLTFADDTMIFAKATEASCHKI 715

Query: 3342 KKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSPIIFST 3521
            ++I+D YC  +GQ+VN  KSA   S       +      L ++  S    YLG PII S 
Sbjct: 716  RQILDKYCLMSGQLVNYHKSAFQCSPNVRDIDKVNFASILGMQESSELGDYLGCPIINSR 775

Query: 3522 SKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDITSKMD 3701
               + F+ ++ K    +  W+   LSQAG+T+L+Q+   +K  + M +F LP  + + +D
Sbjct: 776  VTKETFAGVISKTVQQLPKWKANSLSQAGRTVLIQSNLASKASFQMQSFTLPKKVLTTLD 835

Query: 3702 RACRNFWWN-NADSNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKV-VSEKS 3875
               RNF+WN +  + + +   W+K+C PK+ GG+GFR + + N+AL  KLLWK+ VS+ +
Sbjct: 836  TTYRNFFWNKDPAAKSANFIGWNKICQPKSVGGVGFRKAEVTNIALQMKLLWKIMVSKDN 895

Query: 3876 LWSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVKFWTDQ 4055
            +W  L+  KY K+  L     PS+  S   + L + + F   G  W IGDG  + FWTD 
Sbjct: 896  IWVKLVTQKYLKEQNLLVCKIPSN-ASWQWKNLLRHRNFFSKGLRWLIGDGQDISFWTDN 954

Query: 4056 WIKVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDGSWDCVGLRALV-PSLVLNXXXXXX 4232
            WI     P +                   E  N  G WD   L  LV P++V        
Sbjct: 955  WI--FQYPLN----SKYVPTVGSENIKVAECFNGLGGWDIPKLLTLVPPNIVKAISSVFI 1008

Query: 4233 XXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQCSSAQQSHDFMIIWKLKIPARVK 4412
                  D+L+W     G++SVKS  + I+  E N G         +F  IW +  P ++K
Sbjct: 1009 PSSSQQDRLLWGLTPTGQYSVKSGASLIR--EVNGGTIEKV----EFNWIWGIHAPPKIK 1062

Query: 4413 LFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWTSRLWFSSWLGLR 4592
             FLWK  N+ L+T + LE+ H+ V   C FC+   E   HL F CP+T  ++  S L  +
Sbjct: 1063 NFLWKACNDGLATTSRLERSHIFVPQNCCFCDCPSETICHLCFQCPFTLDIY--SHLEDK 1120

Query: 4593 VDCDAFETQNWF-----NYFRS-RDSSYENLSLYAFSLMYNIWWH----RNECRF----- 4727
                A+   +WF     + FRS  ++ + NL+L   + +  +WWH    RN+  F     
Sbjct: 1121 FQWPAY--PSWFSTLQLSSFRSVLEACHINLTLEYLTKLSIVWWHVWYFRNKLIFNNEST 1178

Query: 4728 SFMKPNFI 4751
            SF + +FI
Sbjct: 1179 SFSQASFI 1186