BLASTX nr result
ID: Coptis25_contig00003649
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00003649 (2345 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vin... 368 4e-99 emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera] 357 8e-96 ref|XP_002319865.1| predicted protein [Populus trichocarpa] gi|2... 355 2e-95 ref|XP_002510776.1| RNA-binding region-containing protein, putat... 354 5e-95 tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea m... 315 1e-88 >ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vinifera] gi|297734754|emb|CBI16988.3| unnamed protein product [Vitis vinifera] Length = 264 Score = 368 bits (944), Expect = 4e-99 Identities = 187/269 (69%), Positives = 206/269 (76%), Gaps = 3/269 (1%) Frame = -2 Query: 1933 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 1754 MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG Sbjct: 1 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60 Query: 1753 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 1574 FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF + Sbjct: 61 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT- 119 Query: 1573 XXXXXXXXGSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXYNVYGGGAATQY 1394 F SAATFPHYAIQQGIPYN+ Y+VY GGAA QY Sbjct: 120 ---GFQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVY-GGAAAQY 175 Query: 1393 PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGYSLQYPHHLYPYSTINST 1220 P+YG G GMMTGA AA+YPYLQFG+G+GG ++ YT+GQGY +QYPHHL YS INST Sbjct: 176 PVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGYGVQYPHHLVQYSAINST 235 Query: 1219 GFTP-HYGGPMSLGPTAPTQAVCFTLQQA 1136 G P HYG PMSL PT Q+VCF + QA Sbjct: 236 GGYPQHYGAPMSLAPTPALQSVCFAVPQA 264 >emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera] Length = 269 Score = 357 bits (916), Expect = 8e-96 Identities = 182/261 (69%), Positives = 200/261 (76%), Gaps = 3/261 (1%) Frame = -2 Query: 1933 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 1754 MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG Sbjct: 1 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60 Query: 1753 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 1574 FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF + Sbjct: 61 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT- 119 Query: 1573 XXXXXXXXGSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXYNVYGGGAATQY 1394 F SAATFPHYAIQQGIPYN+ Y+VY GGAA QY Sbjct: 120 ---GFQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVY-GGAAAQY 175 Query: 1393 PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGYSLQYPHHLYPYSTINST 1220 P+YG G GMMTGA AA+YPYLQFG+G+GG ++ YT+GQGY +QYPHHL YS INST Sbjct: 176 PVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGYGVQYPHHLVQYSAINST 235 Query: 1219 GFTP-HYGGPMSLGPTAPTQA 1160 G P HYG PMSL PT Q+ Sbjct: 236 GGYPQHYGAPMSLAPTPALQS 256 >ref|XP_002319865.1| predicted protein [Populus trichocarpa] gi|222858241|gb|EEE95788.1| predicted protein [Populus trichocarpa] Length = 266 Score = 355 bits (912), Expect = 2e-95 Identities = 182/271 (67%), Positives = 204/271 (75%), Gaps = 5/271 (1%) Frame = -2 Query: 1933 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 1754 MTP+NLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVI DK TGRSKGYG Sbjct: 1 MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVIADKATGRSKGYG 60 Query: 1753 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGA-RNFRVMNSFHS 1577 FVTFRE +AAMRACVD SPVIDGRRANCNLASLGVQ+S+P TPK G A RNFRVM+SF + Sbjct: 61 FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGAAGRNFRVMSSFQT 120 Query: 1576 TXXXXXXXXGSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXYNVYGGGAATQ 1397 F SAA+FPHYAIQQGIPYNV YN+Y GGA Q Sbjct: 121 ----GFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSSYSPDYTYPASYYNMY-GGATAQ 175 Query: 1396 YPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAY--TTGQGYSLQYPHHLYPYSTINS 1223 YPMYG G GMM GA AA+YPYLQFG+G+ G ++Y T+GQ Y +QYPHHL+ YS+INS Sbjct: 176 YPMYGSGHGGMMNGAAAAFYPYLQFGEGSTGGATSYSNTSGQSYGVQYPHHLFQYSSINS 235 Query: 1222 T--GFTPHYGGPMSLGPTAPTQAVCFTLQQA 1136 T G+ HYG PMSL PTA +VCF + QA Sbjct: 236 TTGGYPQHYGAPMSLAPTAALPSVCFAVPQA 266 >ref|XP_002510776.1| RNA-binding region-containing protein, putative [Ricinus communis] gi|223551477|gb|EEF52963.1| RNA-binding region-containing protein, putative [Ricinus communis] Length = 259 Score = 354 bits (909), Expect = 5e-95 Identities = 180/269 (66%), Positives = 207/269 (76%), Gaps = 3/269 (1%) Frame = -2 Query: 1933 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 1754 MTP+NLA QFGDTTYTKVFVGGLAWETQ++TM+KYFEQFGEILEAVVITDK TGRSKGYG Sbjct: 1 MTPSNLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60 Query: 1753 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQ--GGARNFRVMNSFH 1580 FVTFR+ EAAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RN RV++SF Sbjct: 61 FVTFRDPEAAMRACVDSAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNLRVISSFQ 120 Query: 1579 STXXXXXXXXGSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXYNVYGGGAAT 1400 + F SAA+FPHYAIQQGIPYNV YNVY GGA Sbjct: 121 T--------GFGTAFPSAASFPHYAIQQGIPYNVYGYSPYSPEYTYPTSYYNVY-GGATA 171 Query: 1399 QYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSLQYPHHLYPYSTINST 1220 QYPMYG G +GMM+GA AA+YPYLQFG+G+GG TS Y++ Q Y++QYPHHL+ YS +NST Sbjct: 172 QYPMYGTGHSGMMSGAAAAFYPYLQFGEGSGGATS-YSSSQNYNVQYPHHLFQYSAVNST 230 Query: 1219 GFTP-HYGGPMSLGPTAPTQAVCFTLQQA 1136 G P H+G P+SL PTA Q+VCF + QA Sbjct: 231 GGYPQHFGAPLSLAPTASLQSVCFAVPQA 259 >tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays] Length = 295 Score = 315 bits (807), Expect(2) = 1e-88 Identities = 163/263 (61%), Positives = 192/263 (73%), Gaps = 5/263 (1%) Frame = -2 Query: 1933 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 1754 M+P ++ QFGDTTYTKVFVGGLAWETQ+ETMRKYFEQFGEILEAVVITDKNTGRSKGYG Sbjct: 1 MSPPSVMGQFGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYG 60 Query: 1753 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 1574 FVTFR+ +AAMRACVDP+PVIDGRRANCNLASLGVQ+SRP TP+ GGARNFRVM SF+ Sbjct: 61 FVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARNFRVMKSFNQ- 119 Query: 1573 XXXXXXXXGSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXYNVYGGGAATQY 1394 A F S ATFPHYAI QG+P++V YN+YGG QY Sbjct: 120 -QAGIQGGLGAAFPSHATFPHYAIPQGLPFHVYGYSPYTPDYGYPTNFYNIYGG---AQY 175 Query: 1393 PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSLQYPHHLYPYSTINS--- 1223 P YGG + GM+TG T+ +YPY QFGQ +G T+ YT+GQGY+LQ ++ +ST++S Sbjct: 176 PFYGGATAGMVTG-TSPFYPYFQFGQ-SGNTTTNYTSGQGYNLQQYPQMFHFSTVSSTAA 233 Query: 1222 --TGFTPHYGGPMSLGPTAPTQA 1160 TGF YGGP+SL + QA Sbjct: 234 AVTGFAQQYGGPLSLAASPQAQA 256 Score = 40.8 bits (94), Expect(2) = 1e-88 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 6/39 (15%) Frame = -1 Query: 1139 GVTMALTTPTVPVP-----PYRIIPTHFTPTLS-EQPSA 1041 G+TMALT PT+P P PYR+IP+HF + + EQP A Sbjct: 257 GMTMALTAPTLPTPTQAAHPYRLIPSHFAVSAAPEQPLA 295