BLASTX nr result
ID: Coptis25_contig00003643
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00003643 (2506 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI40152.3| unnamed protein product [Vitis vinifera] 577 e-170 ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 577 e-170 ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 547 e-163 ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 528 e-159 gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 514 e-158 >emb|CBI40152.3| unnamed protein product [Vitis vinifera] Length = 1890 Score = 577 bits (1487), Expect(2) = e-170 Identities = 306/572 (53%), Positives = 382/572 (66%), Gaps = 6/572 (1%) Frame = +3 Query: 3 PPGEPVGALAATAISNPSYKVVLDXXXXXNASWELMKEILFLKINFINDLNDRRVILYLK 182 P GEPVG LAATA+SNP+YK VLD N+SWELMKEIL ++NF NDL DRRVILYL Sbjct: 887 PAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLN 946 Query: 183 DCGCVKKYCKENAAYLIQNLLKRVSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLD 356 DC C +KYC+ENAAYL++N LK+ SL+D V F IEY Q S LVGHIHL+ Sbjct: 947 DCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLN 1006 Query: 357 KKLLKDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCK 536 K LL+D+N S+QEV Q C ETI+ FR KK ++G F K I LS ECC + S ++ Sbjct: 1007 KLLLQDLNVSMQEVCQKCEETINSFR--KKKNVGPFFKKIILSFRECCTFQHSCQSKGSD 1064 Query: 537 S-CLQFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVK 713 CL F W+ + +LE I+A+ ICP+LL TIIKGD RV NIIW SPDTT W++ Sbjct: 1065 MPCLLFFWQGNRDD-NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIR 1123 Query: 714 THSRAQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLG 893 +++ GELAL+IVLEK VKQ GDAWR+ LD+CLPV+HLIDT RSIPY I+QVQELLG Sbjct: 1124 NPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLG 1183 Query: 894 ISCAFDQAVLRLSSSIRKVNKGVLKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHI 1073 ISCAFDQAV RLS S+ V KGVLK+HL+L ANSMTC G+LIGFN GYKAL R+L++ + Sbjct: 1184 ISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQV 1243 Query: 1074 PFTEATLFTPRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQ 1253 PFTEATLFTPRKCFE+A+EKCH D+LS IVASCSWGKHV +GTG+ F++LW+ E+G Q Sbjct: 1244 PFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQ 1303 Query: 1254 DGVIDVYDFLQLVRMDPIG-DLNTSCLGRDTDELI-ENGVAELSLSPERNFDYSKPTFDD 1427 DG ID+Y FL LVR G + +T+CLG + ++LI E+ EL +SPE + ++ KP F+D Sbjct: 1304 DGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFED 1363 Query: 1428 -AELQCKFDEHQVGDQGNTGDSRWEMDTSVVKDGGSSDWDAVKPGGSSDWSVVKAGGSSD 1604 AE Q ++ H G G DW AV + S +K S Sbjct: 1364 SAEFQNTWENHVPGSGG--------------------DW-AVNQNKETTASTLKPSAWSS 1402 Query: 1605 WGTVKAVGSSDWGAENAFTESKPSDWECC*SW 1700 WGT K + S+ + W+ +W Sbjct: 1403 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTW 1434 Score = 50.4 bits (119), Expect(2) = e-170 Identities = 68/289 (23%), Positives = 104/289 (35%), Gaps = 34/289 (11%) Frame = +1 Query: 1714 WGTVKAVGSS----------DWGAENAFTESKP----SDWGAT---AVKAGGSSDWGAV- 1839 WGT KA ++ G + F + +P S WG A K G + + G Sbjct: 1434 WGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQ 1493 Query: 1840 --KSGGSSDWGGENAFTGSKPSDWGA----TADKFQKQLCLSTEPSEGGPAA--GWNA-V 1992 K S DW + A + S +G T D + +L + + P W+A + Sbjct: 1494 MDKLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANL 1553 Query: 1993 GSQKLPSKETVDTWGKQDEKSDTNDWVKHVKSQWEKEACDGGPASGWNASES-QKLHSNE 2169 L T W + S DW K K Q E W++S + K SN+ Sbjct: 1554 PEDPLAQATTSVGW----DSSTGKDWTKR-KLQSPSEQQRDPAIKSWSSSHNVMKEQSNQ 1608 Query: 2170 PFDA--WGKQAGKSNTDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWN 2343 P W K D ++ +QRG ++ +SE S GW ++ P + W Sbjct: 1609 PASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSE--SSHGWGPSNEQNQLPSSQGWG 1666 Query: 2344 SLESQETPQMEPSDPW----GKKTEETKAGGWSGNDRHAQGVQWNKSPN 2478 S + + E W GKK+ + GW N+ +W N Sbjct: 1667 SPNAGAGHESETQSQWGQPSGKKSRPEGSRGWGSNN-----TEWKNKKN 1710 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 577 bits (1487), Expect(2) = e-170 Identities = 306/572 (53%), Positives = 382/572 (66%), Gaps = 6/572 (1%) Frame = +3 Query: 3 PPGEPVGALAATAISNPSYKVVLDXXXXXNASWELMKEILFLKINFINDLNDRRVILYLK 182 P GEPVG LAATA+SNP+YK VLD N+SWELMKEIL ++NF NDL DRRVILYL Sbjct: 827 PAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLN 886 Query: 183 DCGCVKKYCKENAAYLIQNLLKRVSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLD 356 DC C +KYC+ENAAYL++N LK+ SL+D V F IEY Q S LVGHIHL+ Sbjct: 887 DCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLN 946 Query: 357 KKLLKDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCK 536 K LL+D+N S+QEV Q C ETI+ FR KK ++G F K I LS ECC + S ++ Sbjct: 947 KLLLQDLNVSMQEVCQKCEETINSFR--KKKNVGPFFKKIILSFRECCTFQHSCQSKGSD 1004 Query: 537 S-CLQFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVK 713 CL F W+ + +LE I+A+ ICP+LL TIIKGD RV NIIW SPDTT W++ Sbjct: 1005 MPCLLFFWQGNRDD-NLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIR 1063 Query: 714 THSRAQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLG 893 +++ GELAL+IVLEK VKQ GDAWR+ LD+CLPV+HLIDT RSIPY I+QVQELLG Sbjct: 1064 NPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLG 1123 Query: 894 ISCAFDQAVLRLSSSIRKVNKGVLKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHI 1073 ISCAFDQAV RLS S+ V KGVLK+HL+L ANSMTC G+LIGFN GYKAL R+L++ + Sbjct: 1124 ISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQV 1183 Query: 1074 PFTEATLFTPRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQ 1253 PFTEATLFTPRKCFE+A+EKCH D+LS IVASCSWGKHV +GTG+ F++LW+ E+G Q Sbjct: 1184 PFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQ 1243 Query: 1254 DGVIDVYDFLQLVRMDPIG-DLNTSCLGRDTDELI-ENGVAELSLSPERNFDYSKPTFDD 1427 DG ID+Y FL LVR G + +T+CLG + ++LI E+ EL +SPE + ++ KP F+D Sbjct: 1244 DGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFED 1303 Query: 1428 -AELQCKFDEHQVGDQGNTGDSRWEMDTSVVKDGGSSDWDAVKPGGSSDWSVVKAGGSSD 1604 AE Q ++ H G G DW AV + S +K S Sbjct: 1304 SAEFQNTWENHVPGSGG--------------------DW-AVNQNKETTASTLKPSAWSS 1342 Query: 1605 WGTVKAVGSSDWGAENAFTESKPSDWECC*SW 1700 WGT K + S+ + W+ +W Sbjct: 1343 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTW 1374 Score = 50.4 bits (119), Expect(2) = e-170 Identities = 68/289 (23%), Positives = 104/289 (35%), Gaps = 34/289 (11%) Frame = +1 Query: 1714 WGTVKAVGSS----------DWGAENAFTESKP----SDWGAT---AVKAGGSSDWGAV- 1839 WGT KA ++ G + F + +P S WG A K G + + G Sbjct: 1374 WGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQ 1433 Query: 1840 --KSGGSSDWGGENAFTGSKPSDWGA----TADKFQKQLCLSTEPSEGGPAA--GWNA-V 1992 K S DW + A + S +G T D + +L + + P W+A + Sbjct: 1434 MDKLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANL 1493 Query: 1993 GSQKLPSKETVDTWGKQDEKSDTNDWVKHVKSQWEKEACDGGPASGWNASES-QKLHSNE 2169 L T W + S DW K K Q E W++S + K SN+ Sbjct: 1494 PEDPLAQATTSVGW----DSSTGKDWTKR-KLQSPSEQQRDPAIKSWSSSHNVMKEQSNQ 1548 Query: 2170 PFDA--WGKQAGKSNTDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWN 2343 P W K D ++ +QRG ++ +SE S GW ++ P + W Sbjct: 1549 PASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSE--SSHGWGPSNEQNQLPSSQGWG 1606 Query: 2344 SLESQETPQMEPSDPW----GKKTEETKAGGWSGNDRHAQGVQWNKSPN 2478 S + + E W GKK+ + GW N+ +W N Sbjct: 1607 SPNAGAGHESETQSQWGQPSGKKSRPEGSRGWGSNN-----TEWKNKKN 1650 >ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 1959 Score = 547 bits (1409), Expect(2) = e-163 Identities = 281/569 (49%), Positives = 380/569 (66%), Gaps = 3/569 (0%) Frame = +3 Query: 3 PPGEPVGALAATAISNPSYKVVLDXXXXXNASWELMKEILFLKINFINDLNDRRVILYLK 182 PPGEPVG LAATA+S P+YK VLD N+SW++MKEIL K++F N+ DRRVILYL Sbjct: 828 PPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLN 887 Query: 183 DCGCVKKYCKENAAYLIQNLLKRVSLRDITVNFQIEYQRTSPEGSGTNANLVGHIHLDKK 362 +C C +KYC ENAAY++++ LK+V+L+D ++F IEY R P SG LVGH+HL++ Sbjct: 888 NCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNR-QPTPSGLGPGLVGHVHLNRM 946 Query: 363 LLKDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQSNDTEWCKSC 542 LLK++N + EVL+ C ET+S F+++KK + S+SE C Q N E Sbjct: 947 LLKELNIDMTEVLRRCQETMSSFKKKKKK----IAHALRFSISEHCAFHQWNGEESIDMP 1002 Query: 543 LQFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVKTHS 722 W + LE T+ I+A+++ P+L +TIIKGD R++ A++IW SPD+T+W K S Sbjct: 1003 CLIFWH-QTRDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPS 1061 Query: 723 RAQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISC 902 R Q GELAL++ LEK VKQ+GDAWR LD CLPV+HLIDT RS+PY I+QVQELLGISC Sbjct: 1062 RWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISC 1121 Query: 903 AFDQAVLRLSSSIRKVNKGVLKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFT 1082 AFDQ + RLS S+ V+KGVL HL+L ANSMTCTG++IGFN GYKAL R+L++ +PFT Sbjct: 1122 AFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFT 1181 Query: 1083 EATLFTPRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGV 1262 EATLFTPRKCFE+AAEKCH D+LS IVASCSWGKHVA+GTG+ F+ILW++ E+G QD V Sbjct: 1182 EATLFTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDV 1241 Query: 1263 IDVYDFLQLVRMDPIGDLNTSCLGRDTDE-LIENGVAELSLSPERNFDYSKPTFDD-AEL 1436 +DVY+FL +VR + ++CLG + ++ ++E+ EL+LSPE KP F+D AE Sbjct: 1242 VDVYNFLHMVRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEF 1301 Query: 1437 QCKFDEHQVGDQGNTGDSRWEMDTSV-VKDGGSSDWDAVKPGGSSDWSVVKAGGSSDWGT 1613 + D + G+S+WE S+ G W++ + G +++ + +DW Sbjct: 1302 EHCLDNY-------PGESKWEKAPSLGAVSTGGGQWESNENGKATN-----SSDGNDWSG 1349 Query: 1614 VKAVGSSDWGAENAFTESKPSDWECC*SW 1700 D NA + S W+ SW Sbjct: 1350 WGRKAEPDVTVTNAQENTSNSAWDTTSSW 1378 Score = 58.5 bits (140), Expect(2) = e-163 Identities = 72/316 (22%), Positives = 112/316 (35%), Gaps = 47/316 (14%) Frame = +1 Query: 1693 KAGG---SSDWGT----------VKAVGSSDWGA---ENAFTESKPSDWGATAVKAGGSS 1824 K+GG +S WGT SS W + A T+ A K+GG Sbjct: 1412 KSGGWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWE 1471 Query: 1825 D--WGAVKSGGSSDWGGE-----NAF------TGSKPSDWGATADKFQKQLCLSTEPSEG 1965 D W S +W + +F SK + WG+T T+ S G Sbjct: 1472 DKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGW--------TKNSGG 1523 Query: 1966 G--PAAGWNAVGSQKLPSKETVDTWGKQD----EKSDTNDW----VKHVKSQWEKEACDG 2115 AGWN G + ++ D W ++ E T+ W V K + +A D Sbjct: 1524 DHQSEAGWND-GQASMDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDH 1582 Query: 2116 GPA---SGWNASESQKLHSNEPFDAWGKQAGKSNTDGWVKNIESQRGQPNESRESESSKS 2286 + W+ +S + DAWG+Q + + N ES ES Sbjct: 1583 SDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSD 1642 Query: 2287 TGWNTIKSSSESPRTSNWNSLESQETP-----QMEPSDPWGKKTEETKAGGWSGNDRHAQ 2451 G++ + + +S T W+S E + P +E S WG + + G W R ++ Sbjct: 1643 HGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQND--SLGSWGQPQRASE 1700 Query: 2452 GVQWNKSPNMNTNSSQ 2499 + +T SQ Sbjct: 1701 ECSRESQDDSSTQFSQ 1716 >ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] Length = 1947 Score = 528 bits (1360), Expect(2) = e-159 Identities = 284/572 (49%), Positives = 369/572 (64%), Gaps = 15/572 (2%) Frame = +3 Query: 9 GEPVGALAATAISNPSYKVVLDXXXXXNASWELMKEILFLKINFINDLNDRRVILYLKDC 188 GEPVG LAATA+SNP+YK VLD N+SWE MKE+L K+NF N NDRRVILYL +C Sbjct: 825 GEPVGVLAATAMSNPAYKAVLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNEC 884 Query: 189 GCVKKYCKENAAYLIQNLLKRVSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLDKK 362 C K++C+ENAAY ++N LK+VSL+D V F +EY Q+T E G ++ L GHIHLDK Sbjct: 885 HCGKRFCQENAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKT 944 Query: 363 LLKDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECCCLEQS---NDTEWC 533 LL+D N S+Q++LQ C + I+ ++KK K SLSVSECC + D++ Sbjct: 945 LLQDWNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDM- 1003 Query: 534 KSCLQFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNWVK 713 CL FS+ + LE T ++ N I P+LL+T+IKGD R+ ANIIW+S D T W++ Sbjct: 1004 -PCLMFSY--SATDPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIR 1060 Query: 714 THSRAQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLG 893 ++ GE L++ +EK VKQ GDAWR+ +D+CL V+HLIDT RSIPY I+QVQELLG Sbjct: 1061 NCHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLG 1120 Query: 894 ISCAFDQAVLRLSSSIRKVNKGVLKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHI 1073 +SCAF+QAV RLS+S+R V+KGVLK+H++L AN+MTC+G+++GFN GYKAL RSL++ Sbjct: 1121 LSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKA 1180 Query: 1074 PFTEATLFTPRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQ 1253 PFTEATL TPR+CFE+AAEKCH D+LS +V SCSWGK V +GTG+ FE+LWN+ E GLD Sbjct: 1181 PFTEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDD 1240 Query: 1254 DGVIDVYDFLQLVRMDPIGDLNTSCLGRDTDELIENGVAELSLSPERNFDYSKPTFDD-A 1430 DVY FLQ+VR D S G D + E +AE + SPER+ +P F+D A Sbjct: 1241 KEETDVYSFLQMVRSTTNADAYVSSPGFD---VTEEEMAEWAESPERDSALGEPKFEDSA 1297 Query: 1431 ELQCKFDEHQVGDQGNTGDSRWEMDTSVVKDGGSSDWDAVKPGGSSDWSVVK-----AGG 1595 E Q + D+G +S WE SS WD GG S+W V K A Sbjct: 1298 EFQ------NLHDEGKPSESNWEK---------SSSWDNGCSGG-SEWGVSKNTGGEANP 1341 Query: 1596 SSDWGTVKAVGSSD----WGAENAFTESKPSD 1679 S+W V D W + ES SD Sbjct: 1342 ESNWEKTTNVEKEDAWSSWNTKKDAQESSKSD 1373 Score = 63.5 bits (153), Expect(2) = e-159 Identities = 68/258 (26%), Positives = 100/258 (38%), Gaps = 19/258 (7%) Frame = +1 Query: 1705 SSDWGTVKAVGSSDWGAENAFTESKPSDWGATAVKAGGSSDWGAVKSGGSSDWGGENAFT 1884 S WG K+ W +N TES P+ WG+T GSSD +N+ T Sbjct: 1412 SDVWGH-KSGSDKSWDKKNGGTESAPAAWGSTDAAVWGSSD-------------KKNSET 1457 Query: 1885 GSKPSDWGATADKFQKQLCLSTEPSEGGPAAG-WNAVGSQKLPSKETVDTWGKQDE-KSD 2058 S + WG+ K ++E G G WN S+ ++ TWG D+ KS Sbjct: 1458 ESDAAAWGSRDKK-------NSEVGSGAGVLGPWNKKSSK---TESDGATWGSSDKTKSG 1507 Query: 2059 TNDWVKHVKSQWEKE--ACDGGPASGWNASESQKLHSNEPFDAWG-----KQAGKSNTDG 2217 W S W+K+ D PA+ W + K + WG K +S G Sbjct: 1508 AAAW-----SSWDKKNMETDSEPAA-WGSQSKNKPETESGPSTWGAWDTKKSETESGPAG 1561 Query: 2218 WVKNIESQRGQPNESRESESSKSTGWNTIKSSSE-------SPRTSNWNSLESQETPQME 2376 W I ++ N ES + W+ KS++E S + W + + Sbjct: 1562 W--GIVDKK---NSETESGPAAMGNWDKKKSNTESGPAAWGSTDAAVWGFSDKNNSETES 1616 Query: 2377 PSDPWG---KKTEETKAG 2421 + WG KKT ET++G Sbjct: 1617 DAAAWGSRDKKTSETESG 1634 >gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana] Length = 1976 Score = 514 bits (1324), Expect(2) = e-158 Identities = 275/573 (47%), Positives = 363/573 (63%), Gaps = 16/573 (2%) Frame = +3 Query: 9 GEPVGALAATAISNPSYKVVLDXXXXXNASWELMKEILFLKINFINDLNDRRVILYLKDC 188 GEPVG LAATA+SNP+YK VLD N+SWELMKE+L K+NF N NDRRVILYL +C Sbjct: 825 GEPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNEC 884 Query: 189 GCVKKYCKENAAYLIQNLLKRVSLRDITVNFQIEYQR--TSPEGSGTNANLVGHIHLDKK 362 C K++C+ENAA ++N L +VSL+D V F +EY++ T E G ++ L GHIHL+K Sbjct: 885 HCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKT 944 Query: 363 LLKDMNRSLQEVLQNCHETISFFRRRKKNSLGGFLKNISLSVSECC-----CLEQSNDTE 527 LL+D N S+Q++ Q C + I+ ++KK K SLSVSECC C + +D Sbjct: 945 LLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMP 1004 Query: 528 WCKSCLQFSWRLDISSLSLETTSQIMANMICPILLDTIIKGDCRVQEANIIWSSPDTTNW 707 CL FS+ + + LE T ++ N + P+LL+ +IKGD R+ ANIIW+S D T W Sbjct: 1005 ----CLTFSY--NATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTW 1058 Query: 708 VKTHSRAQHGELALEIVLEKKFVKQHGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQEL 887 ++ ++ GE L++ +EK VKQ GDAWR+ +DSCL V+HLIDT RSIPY ++QVQEL Sbjct: 1059 IRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQEL 1118 Query: 888 LGISCAFDQAVLRLSSSIRKVNKGVLKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDV 1067 LG+SCAF+QAV RLS+S+R V+KGVLK+H++L AN+MTC+G+++GFN GYKAL RSL++ Sbjct: 1119 LGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNI 1178 Query: 1068 HIPFTEATLFTPRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGL 1247 PFTEATL PRKCFE+AAEKCH D+LS +V SCSWGK V +GTG+ FE+LWN+ E GL Sbjct: 1179 KAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGL 1238 Query: 1248 DQDGVIDVYDFLQLVRMDPIGDLNTSCLGRDTDELIENGVAELSLSPERNFDYSKPTFDD 1427 D DVY FLQ+V D S G D + E +AE + SPER+ +P F+D Sbjct: 1239 DDKEETDVYSFLQMVISTTNADAFVSSPGFD---VTEEEMAEWAESPERDSALGEPKFED 1295 Query: 1428 AELQCKFDEHQVGDQGNTGDSRWEMDTSVVKDGGSSDWDAVKPGGSSDWSVVKAGG---- 1595 + D + D+G + WE SS WD GG S+W V K+ G Sbjct: 1296 SA-----DFQNLHDEGKPSGANWEK---------SSSWDNGCSGG-SEWGVSKSTGGEAN 1340 Query: 1596 -SSDWGTVKAVGSSD----WGAENAFTESKPSD 1679 S+W V D W ES SD Sbjct: 1341 PESNWEKTTNVEKEDAWSSWNTRKDAQESSKSD 1373 Score = 73.9 bits (180), Expect(2) = e-158 Identities = 80/328 (24%), Positives = 118/328 (35%), Gaps = 61/328 (18%) Frame = +1 Query: 1705 SSDWGTVKAVGSSDWGAENAFTESKPSDWGATAVKAGGSSD------------WGA---- 1836 S WG K+V W +N TES P+ WG+T GSSD WG+ Sbjct: 1412 SDVWGH-KSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSDKKNSETESDAAAWGSRDKN 1470 Query: 1837 ---VKSG---------------------GSSD-----------WGGENAFTGSKPSDWGA 1911 V SG GSSD W +N T S+P+ WG+ Sbjct: 1471 NSDVGSGAGVLGPWNKKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGS 1530 Query: 1912 TADKFQKQLCLSTEPSEGGPAAGWNAVGSQKLPSKETVDTWGKQDEKSDTNDWVKHVKSQ 2091 K +E GPAA W A +K ++ WG D+K+ + Sbjct: 1531 QGKK--------NSETESGPAA-WGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGN 1581 Query: 2092 WEKEACD--GGP-------ASGWNASESQKLHSNEPFDAWGKQAGKSNTDGWVKNIESQR 2244 W+K+ D GP A+ W +S+ + AWG + K++ Sbjct: 1582 WDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSW 1641 Query: 2245 GQPNESRESESSKSTGWNTIKSSSESPRTSNWNSLESQETPQMEPSDPWGKKTEE-TKAG 2421 GQP+ + E + + N S E+ +S+E E S WG ++ +G Sbjct: 1642 GQPSPTAEDKDTNEDDRNPWVSLKET---------KSREKDDKERSQ-WGNPAKKFPSSG 1691 Query: 2422 GWSGNDRHAQGVQWNKSPNMNTNSSQEE 2505 GWS + G W + N + E Sbjct: 1692 GWS----NGGGADWKGNRNHTPRPPRSE 1715