BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003552
         (3779 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1841   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1788   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1780   0.0  
ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|2...  1776   0.0  
ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III s...  1727   0.0  

>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1841 bits (4768), Expect = 0.0
 Identities = 903/1139 (79%), Positives = 1016/1139 (89%), Gaps = 6/1139 (0%)
 Frame = +2

Query: 92   INKQHLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFIETGIKKVVHANNIITSIVD 271
            I+K   A P+K AVDKF LLPEFLKVRGLVKQHLDSFNYF++T IKK+V AN+ I S VD
Sbjct: 6    IHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVD 65

Query: 272  PGLYLKYTDVRIGDPSIKLDHAVKQLTPHMCRLSDITYAASILVDIEYTTGAGVNNLKRK 451
            P +YL++ DVRIG+PSI +D   ++L PH CRLSD+TYAA ILV+IEY TG+ V   K +
Sbjct: 66   PSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQ--KTR 123

Query: 452  VERKNVEIGRLPIMLRSHKCILYGKDEAELAKLRECPLDPGGYFVVKGTEKVVLIQEQLS 631
            VE+ +V IGR+PIMLRS  C+LY KDEAELA+L ECPLDPGGYFVVKGTEKV+LIQEQLS
Sbjct: 124  VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 632  KNRIIIDSDRKGRLMAXXXXXXXXXXXXXNLIMDKEKIYLELNAFEKVVPIMVVMKAMGM 811
            KNRIIID+D+KG + A              ++M+KEKI+L+LN F   +PIM+VMKAMGM
Sbjct: 184  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243

Query: 812  ESDQEVVQMLGRDPRYATLLLPSIQECVKENVHTQQQALEFLDKRVRKF-LYNSNVSQEG 988
            ESDQEVVQM+GR+PRY+ LLLPS++EC    ++TQQQALEFL+++V+K   YN ++ +EG
Sbjct: 244  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 303

Query: 989  RALIVLRDVFIANVPVHQHNFRPKCMYVAVMLRRMMEAYLNKDAMDDKDYVGNKRLELSG 1168
            R + +LRD FIANVPV Q+NFRPKC+YVAVMLRRMM+A LNKDAMDDKDYVGNKRLELSG
Sbjct: 304  RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363

Query: 1169 QLISLLFEDLFKTANSDIKKRVDAVLAK--RSTQFDF---LQYIKGDIITRGLENAMATG 1333
            QLISLLFEDLFKT  S++KK +DA+LAK  RS++FDF   L++I  D IT GLE  ++TG
Sbjct: 364  QLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTG 423

Query: 1334 NWDLKRFKMHRKGMTQVLARLSFIASLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPC 1513
            NWD+KRF+MHRKGM+QV+ARLS+I SLGHMTKI PQFEKSRKVSGPRALQPSQWGMLCPC
Sbjct: 424  NWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 483

Query: 1514 DTPEGESCGLVKNLALMTHVTTDEEDGPLVSLCRSLGVEDLELMSGEELHSANSFLVICN 1693
            DTPEGE+CGLVKNLALMTHVTTDEE+ PL+SLC SLGVEDLEL+SGEELH+ NSFL+I N
Sbjct: 484  DTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFN 543

Query: 1694 GLILGKHRKPQHFANALRKLRRAGRIGDFVSVFVNEKQRCVYIASDGGRVCRPLVVADKG 1873
            GLILGKHR+PQ FANALRKLRRAG+IG+FVSVFVNEKQ CVYIASDGGRVCRP+V+ADKG
Sbjct: 544  GLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKG 603

Query: 1874 VSRIKEHHMKELRDGARTFNDFLREGLIEYLDVNEQNNALIALYDGEAEPETTHIEIEPF 2053
             SRIKEHHMKEL DG RTF+DFLR+GLIEYLDVNE+NNALIALY+ +A+PETTHIEIEPF
Sbjct: 604  KSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPF 663

Query: 2054 TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLYRMDSLLYLLVYPQRPLLTT 2233
            TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDSLLYLLVYPQRPLLTT
Sbjct: 664  TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTT 723

Query: 2234 KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKLSAVCQKY 2413
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK SAV Q+Y
Sbjct: 724  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRY 783

Query: 2414 PNNTMDRIVRPQRVGRDAERTQLLDDDGLASPGEIIRPYDIYINKQSPINTKSTYESSKG 2593
             NN  DRIVRP +VG DAER Q+LDDDGLA+PGEII+P DIYINK+SPI TK    S  G
Sbjct: 784  ENNASDRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVG 843

Query: 2594 LPDNAYKPSIQTYKGARGETAVVDRVQLNSDKDNNLCFRFIIRHTRRPEVGDKFSSRHGQ 2773
            LPD+AYKPS QT+KG  GE +VVDRV L SDK++NLC +F+IRHTRRPEVGDKFSSRHGQ
Sbjct: 844  LPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQ 903

Query: 2774 KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSA 2953
            KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFHYGSA
Sbjct: 904  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 963

Query: 2954 FGEPSGHADRVEAISETLVKNGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 3133
            FGEPSGHAD+VE IS+TLVK+GFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD
Sbjct: 964  FGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1023

Query: 3134 KMHARARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFEVQ 3313
            KMHAR  GPRVMLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLM+SSDPFEVQ
Sbjct: 1024 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1083

Query: 3314 VCRACGMLGYFNHKVKTSVCSSCKNGDNISTMKLPYACKLLFQELQSMNVVPRLKLTEA 3490
            VCR CG+LGY+NHK+K  +CS+CKNGDNISTMKLPYACKLLFQELQ+MNVVPRLKLTEA
Sbjct: 1084 VCRVCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTEA 1142


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1788 bits (4631), Expect = 0.0
 Identities = 880/1135 (77%), Positives = 993/1135 (87%), Gaps = 2/1135 (0%)
 Frame = +2

Query: 92   INKQHLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFIETGIKKVVHANNIITSIVD 271
            I+KQ L APIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+  GIKK+V AN+ I S VD
Sbjct: 22   IDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVD 81

Query: 272  PGLYLKYTDVRIGDPSIKLDHAVKQLTPHMCRLSDITYAASILVDIEYTTGAGVNNLKRK 451
            PG+YL++ DVRIG PS  +D   +QL+PHMCRLSD TYAA ILV++EY  G+  ++ K +
Sbjct: 82   PGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGS--HDQKTR 139

Query: 452  VERKNVEIGRLPIMLRSHKCILYGKDEAELAKLRECPLDPGGYFVVKGTEKVVLIQEQLS 631
            VE+ +V IGR+PIMLRS  C+LYGKDEAELA+L ECPLDPGGYFV+KGTEKV+LIQEQLS
Sbjct: 140  VEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLS 199

Query: 632  KNRIIIDSDRKGRLMAXXXXXXXXXXXXXNLIMDKEKIYLELNAFEKVVPIMVVMKAMGM 811
            KNRIIID+D+KG + A              + M+KEK+YL LN F K +PIMVV+KAMGM
Sbjct: 200  KNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGM 259

Query: 812  ESDQEVVQMLGRDPRYATLLLPSIQECVKENVHTQQQALEFLDKRVRKFLYNSNVSQEGR 991
            ESDQEVVQM+GRDPRY+ LLLPSI+EC   +++TQQ+ALE+LD             +E R
Sbjct: 260  ESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLD------------GKENR 307

Query: 992  ALIVLRDVFIANVPVHQHNFRPKCMYVAVMLRRMMEAYLNKDAMDDKDYVGNKRLELSGQ 1171
            AL +LRDVF+ANVPVH++NFRPKC+YVAVMLRRMMEA LNKDAMDDKDYVGNKRLELSGQ
Sbjct: 308  ALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQ 367

Query: 1172 LISLLFEDLFKTANSDIKKRVDAVLAK--RSTQFDFLQYIKGDIITRGLENAMATGNWDL 1345
            LISLLFEDLFKT  +++++ +D VL K  RS++FD  QYI  D IT GLE  ++TGN+D+
Sbjct: 368  LISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDV 427

Query: 1346 KRFKMHRKGMTQVLARLSFIASLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 1525
            KRFKMHRKGMTQVL RLS+IASLG MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 428  KRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 487

Query: 1526 GESCGLVKNLALMTHVTTDEEDGPLVSLCRSLGVEDLELMSGEELHSANSFLVICNGLIL 1705
            GE+CGLVKNLALMTHVTTD+E+GPL+SLC  LGVEDLEL+SGEELH+ NSFLVI NGLIL
Sbjct: 488  GEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLIL 547

Query: 1706 GKHRKPQHFANALRKLRRAGRIGDFVSVFVNEKQRCVYIASDGGRVCRPLVVADKGVSRI 1885
            GKHR+PQ+F N++RKLRRAG+IG+FVSVFVNEKQR VY+ASDGGRVCRPLV+AD+GVSRI
Sbjct: 548  GKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRI 607

Query: 1886 KEHHMKELRDGARTFNDFLREGLIEYLDVNEQNNALIALYDGEAEPETTHIEIEPFTILG 2065
            KEHHMKELRDG RTF+DFLR+GLIEYLDVNE+NNAL+ALY+GEA PETTHIEIEPFTILG
Sbjct: 608  KEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILG 667

Query: 2066 VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLYRMDSLLYLLVYPQRPLLTTKTIE 2245
            VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQL+RMDSLLYLLVYPQRPLLTT+TIE
Sbjct: 668  VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIE 727

Query: 2246 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKLSAVCQKYPNNT 2425
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKK  A+ QKY N  
Sbjct: 728  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGA 787

Query: 2426 MDRIVRPQRVGRDAERTQLLDDDGLASPGEIIRPYDIYINKQSPINTKSTYESSKGLPDN 2605
             DRI+RP R     ER ++LD DGLA+PGEII+P DIY+ K+ PI+T    +SS  L + 
Sbjct: 788  SDRILRPDRT---VERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENI 844

Query: 2606 AYKPSIQTYKGARGETAVVDRVQLNSDKDNNLCFRFIIRHTRRPEVGDKFSSRHGQKGVC 2785
             Y+PS  +YKG  GE+ V+DRV L+SD++NNLC + +IRHTRRPEVGDKFSSRHGQKGVC
Sbjct: 845  KYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVC 904

Query: 2786 GTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGEP 2965
            GTIIQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFHYGSAFGEP
Sbjct: 905  GTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 964

Query: 2966 SGHADRVEAISETLVKNGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 3145
            SGHAD VEAISETLV  GFSY+GKD IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA
Sbjct: 965  SGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1024

Query: 3146 RARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRA 3325
            R  GPRVMLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLMISSDPFEVQVCR 
Sbjct: 1025 RGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRV 1084

Query: 3326 CGMLGYFNHKVKTSVCSSCKNGDNISTMKLPYACKLLFQELQSMNVVPRLKLTEA 3490
            CG+LGYFN K++  +CS+CKNGDNISTMKLPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1085 CGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAEA 1139


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1780 bits (4610), Expect = 0.0
 Identities = 878/1155 (76%), Positives = 1007/1155 (87%), Gaps = 5/1155 (0%)
 Frame = +2

Query: 41   SKLEKMGVVEDTPPIIR-INKQHLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFIE 217
            SK EK+G  +++ PI   I+KQ +  PIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+ 
Sbjct: 10   SKNEKLG--DNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVN 67

Query: 218  TGIKKVVHANNIITSIVDPGLYLKYTDVRIGDPSIKLDHAVKQLTPHMCRLSDITYAASI 397
            T IKK+V AN+ I S  DP +YL++ DVRIG+PS+ ++   + + PHMCRLSD+TYAA I
Sbjct: 68   TEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPI 127

Query: 398  LVDIEYTTGAGVNNLKRKVERKNVEIGRLPIMLRSHKCILYGKDEAELAKLRECPLDPGG 577
            LVDIEY   +      R  E+K+V IGR+PIMLRS  C+L+GKDEAELA+L ECPLDPGG
Sbjct: 128  LVDIEYIEESHAQKAPR--EKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGG 185

Query: 578  YFVVKGTEKVVLIQEQLSKNRIIIDSDRKGRLMAXXXXXXXXXXXXXNLIMDKEKIYLEL 757
            YF++KGTEKVVLIQEQLSKNRIIID+D+KG + A              + M+ EKIYL+L
Sbjct: 186  YFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQL 245

Query: 758  NAFEKV-VPIMVVMKAMGMESDQEVVQMLGRDPRYATLLLPSIQECVKENVHTQQQALEF 934
            N F    +PIMVV+KAMGMES QEVVQM+GRDPRY  LLLPSI+EC KE ++TQ+QALE+
Sbjct: 246  NIFTTPKIPIMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEY 305

Query: 935  LDKRVRKFLYNSNVSQ-EGRALIVLRDVFIANVPVHQHNFRPKCMYVAVMLRRMMEAYLN 1111
            L+ +V+KF + S   + EGRAL +LRDVF+ANVPV+++NF PKC+YVAVM+RRMM+A L+
Sbjct: 306  LETKVKKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILS 365

Query: 1112 KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTANSDIKKRVDAVLAK--RSTQFDFLQYI 1285
            KDAMDDKDYVGNKRLELSGQLISLLFEDLFKT  S++KK +D +L K  RS++FDF Q++
Sbjct: 366  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHL 425

Query: 1286 KGDIITRGLENAMATGNWDLKRFKMHRKGMTQVLARLSFIASLGHMTKIQPQFEKSRKVS 1465
              +II+ GLE  ++TGNWD+KRF+MHRKGM+QVLARLSFI+++GH+T++ PQFEKSRKVS
Sbjct: 426  NSNIISFGLERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVS 485

Query: 1466 GPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEDGPLVSLCRSLGVEDLELM 1645
            GPRALQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTD+E+GPL+SLC  LGVEDLEL+
Sbjct: 486  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELL 545

Query: 1646 SGEELHSANSFLVICNGLILGKHRKPQHFANALRKLRRAGRIGDFVSVFVNEKQRCVYIA 1825
            S EELH+ NSFLVI NG ILGKHR+PQ+FA  +R LRRAG+IG+FVSVFVNEKQ CVYIA
Sbjct: 546  SAEELHTPNSFLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIA 605

Query: 1826 SDGGRVCRPLVVADKGVSRIKEHHMKELRDGARTFNDFLREGLIEYLDVNEQNNALIALY 2005
            SDGGRVCRPLV+ADKGVSRIKE+HMKEL DG RTF+DFLR+GLIEYLDVNE+NNALIALY
Sbjct: 606  SDGGRVCRPLVIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALY 665

Query: 2006 DGEAEPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLYRMD 2185
            +GEA PETTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD
Sbjct: 666  EGEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMD 725

Query: 2186 SLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGF 2365
            +LLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGF
Sbjct: 726  TLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 785

Query: 2366 GRCIVMKKLSAVCQKYPNNTMDRIVRPQRVGRDAERTQLLDDDGLASPGEIIRPYDIYIN 2545
            GRCIV KK S+V QKY NNT DRIVRP R        Q+LDDDGLA+PGEIIRP DIY+N
Sbjct: 786  GRCIVFKKYSSVNQKYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVN 845

Query: 2546 KQSPINTKSTYESSKGLPDNAYKPSIQTYKGARGETAVVDRVQLNSDKDNNLCFRFIIRH 2725
            KQSPI  K +     G+PDNAY+P  Q +KG+ GE  VVDRV L++DK++ LC +F+IR 
Sbjct: 846  KQSPIIMKGS--PLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQ 903

Query: 2726 TRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELL 2905
            TRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELL
Sbjct: 904  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 963

Query: 2906 GGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLVKNGFSYSGKDFIYSGITGCPLQAYI 3085
            GGKAGVSCGRFHYGSAFGEPSGHAD+V+AISETL+K GFSY+GKDF+YSGITGCPLQAYI
Sbjct: 964  GGKAGVSCGRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYI 1023

Query: 3086 FMGPIYYQKLKHMVLDKMHARARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASM 3265
            FMGPIYYQKLKHMVLDKMHAR  GPRVMLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM
Sbjct: 1024 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1083

Query: 3266 LIFERLMISSDPFEVQVCRACGMLGYFNHKVKTSVCSSCKNGDNISTMKLPYACKLLFQE 3445
            LI+ERLMISSDPFEVQVCR CG+LGY+NHK+KT +CSSCKNGDNISTMKLPYACKLL QE
Sbjct: 1084 LIYERLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQE 1143

Query: 3446 LQSMNVVPRLKLTEA 3490
            LQSMN+VPRLKL EA
Sbjct: 1144 LQSMNIVPRLKLAEA 1158


>ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|222868352|gb|EEF05483.1|
            predicted protein [Populus trichocarpa]
          Length = 1141

 Score = 1776 bits (4599), Expect = 0.0
 Identities = 879/1143 (76%), Positives = 999/1143 (87%), Gaps = 10/1143 (0%)
 Frame = +2

Query: 92   INKQ-HLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFIETGIKKVVHANNIITSIV 268
            I+KQ H AAP+KSAVDKFQLLPEFLK RGLVKQHLDSFNYFI  GIKK+V AN+ I S V
Sbjct: 4    IDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTV 63

Query: 269  DPGLYLKYTDVRIGDPSIKLDHAVKQLTPHMCRLSDITYAASILVDIEYTTGAGVNNLKR 448
            DP LYL++TDV+IG PS+ +D   +Q+TPHMCRLSD TYAA ILV+IEY +G+  +  K 
Sbjct: 64   DPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGS--HGRKE 121

Query: 449  KVERKNVEIGRLPIMLRSHKCILYGKDEAELAKLRECPLDPGGYFVVKGTEKVVLIQEQL 628
            K+ + +V IGR+PIMLRS  C+LYGK+EAELA+L ECPLDPGGYFVVKGTEKV+LIQEQL
Sbjct: 122  KMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQL 181

Query: 629  SKNRIIIDSDRKGRLMAXXXXXXXXXXXXXNLIMDKEKIYLELNAFEKVVPIMVVMKAMG 808
            SKNRIIID+D+KG + A              ++M+KEK+YL LN F K +PIMVVMKAMG
Sbjct: 182  SKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMG 241

Query: 809  MESDQEVVQMLGRDPRYATLLLPSIQECVKENVHTQQQALEFLDKRVRKFLYNSNVSQ-E 985
            MESDQEVVQM+GRDPRY+ LLLPSI+EC    V+TQQQALE+L+  V++  Y+S+ ++ E
Sbjct: 242  MESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKE 301

Query: 986  GRALIVLRDVFIANVPVHQHNFRPKCMYVAVMLRRMMEAYLNKDAMDDKDYVGNKRLELS 1165
             RAL +LRDVFIANVPV ++NFRPKC+YVAVMLRRMMEA LNKDAMDDKDYVGNKRLELS
Sbjct: 302  NRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELS 361

Query: 1166 GQLISLLFEDLFKTANSDIKKRVDAVLAK--RSTQFDFLQYIKGDIITRGLENAMATGNW 1339
            GQLISLLFEDLFKT  ++++K  D +L K  RS++FDF QYI  D IT GLE A++TGNW
Sbjct: 362  GQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNW 421

Query: 1340 DLKRFKMHRKGMTQVLARLSFIASLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDT 1519
            D+KRF+M+RKG+TQVL RLS++ASLGHMT+I PQFEKSRKVSGPRALQPSQWGMLCPCDT
Sbjct: 422  DVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDT 481

Query: 1520 PEGESCGLVKNLALMTHVTTDEEDGPLVSLCRSLGVEDLELMSGEELHSANSFLVICNGL 1699
            PEGE+CGLVKNLALMTHVTTDEE+ PL+SLC+ LGVEDLEL+SGEELH+ NSFLVI NGL
Sbjct: 482  PEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGL 541

Query: 1700 ILGKHRKPQHFANALRKLRRAGRIGDFVSVFVNEKQRCVYIASDGGRVCRPLVVADKGVS 1879
            ILGKHR+PQ FANA+RKLRRAG+IG+FVSVFVNEKQR VYIASDGGRVCRPLV+ADKGVS
Sbjct: 542  ILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVS 601

Query: 1880 RIKEHHMKELRDGARTFNDFLREGLIEYLDVNEQNNALIALYDGEAEPETTHIEIEPFTI 2059
            RIKEHHM+EL DGARTF+DFL EGLIEYLDVNE+NNALIALY+ EA PETTHIEIEPFTI
Sbjct: 602  RIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTI 661

Query: 2060 LGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLYRMDSLLYLLVYPQRPLLTTKT 2239
            LGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQ  RMDSLLYLLVYPQRPLLTT+T
Sbjct: 662  LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRT 721

Query: 2240 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKLSAVCQKYPN 2419
            IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIV+KK +   QKY N
Sbjct: 722  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYEN 781

Query: 2420 NTMDRIVRPQRVGRDAERTQLLDDDGLASPGEIIRPYDIYINKQSPINTKSTYESSKGLP 2599
               DRI+RP+   ++ ER ++LDDDGLA+PGEIIR  DIYINK+SPI T+   +S+  L 
Sbjct: 782  GASDRILRPR---KNEERERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALA 838

Query: 2600 DNAYKPSIQTYKGARGETAVVDRVQLNSDKDNNLCFRFIIRHTRRPEVGDKFSSRHGQKG 2779
            D  Y+P  Q +KG  GE+ VVDRV L SDK+NNLC ++ IRHTRRPEVGDKFSSRHGQKG
Sbjct: 839  DVKYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKG 898

Query: 2780 VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFG 2959
            VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFHYGSAFG
Sbjct: 899  VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 958

Query: 2960 EPSGHADRVEAIS------ETLVKNGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKH 3121
            EPSGHADRVEAI       ETLVK+GFSY+GKDFIYSGITGCPLQAYIFMGPIYYQKLKH
Sbjct: 959  EPSGHADRVEAIRHFLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKH 1018

Query: 3122 MVLDKMHARARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDP 3301
            MVLDKMHAR  GPRVMLTRQPT+GR+R+GGLR+GEME+DCL+AYG SML++ERLM+SSD 
Sbjct: 1019 MVLDKMHARGSGPRVMLTRQPTDGRARNGGLRVGEMEKDCLVAYGTSMLLYERLMVSSDQ 1078

Query: 3302 FEVQVCRACGMLGYFNHKVKTSVCSSCKNGDNISTMKLPYACKLLFQELQSMNVVPRLKL 3481
            FE QVCRACG+LGY+N K+K ++C++CKNGD +STMKLPYACKLL QELQSMN+VPRLKL
Sbjct: 1079 FEAQVCRACGLLGYYNQKLKAAMCTTCKNGDKVSTMKLPYACKLLIQELQSMNIVPRLKL 1138

Query: 3482 TEA 3490
             EA
Sbjct: 1139 AEA 1141


>ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score = 1727 bits (4473), Expect = 0.0
 Identities = 852/1134 (75%), Positives = 978/1134 (86%), Gaps = 6/1134 (0%)
 Frame = +2

Query: 107  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFIETGIKKVVHANNIITSIVDPGLYL 286
            L APIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+ T IKK+V AN++I +   P +YL
Sbjct: 36   LTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYL 95

Query: 287  KYTDVRIGDPSIKLDHAVKQLTPHMCRLSDITYAASILVDIEYTTGAGVN-NLKRKVERK 463
            ++ +V IG PSI +D   + LTP  CRLSD+TYAA I  D+EYT G+    ++KRK++  
Sbjct: 96   RFLNVGIGKPSIMIDEVTEDLTPQTCRLSDLTYAAPICADVEYTLGSHDKPDIKRKLK-- 153

Query: 464  NVEIGRLPIMLRSHKCILYGKDEAELAKLRECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 643
             VEIGR+PIMLRS  C+L+G+DEAELAKL ECPLDPGGYFV+KGTEKV+LIQEQLSKNRI
Sbjct: 154  -VEIGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRI 212

Query: 644  IIDSDRKGRLMAXXXXXXXXXXXXXNLIMDKEKIYLELNAFEKVVPIMVVMKAMGMESDQ 823
            IID+D+KG + A              ++M+KEK++L+LN F K VP+MVVMKAMGMESDQ
Sbjct: 213  IIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKFPKKVPLMVVMKAMGMESDQ 272

Query: 824  EVVQMLGRDPRYATLLLPSIQECVKENVHTQQQALEFLDKRVRKFLYNSNVSQEGRALIV 1003
            EV QM+GRDPRY+ LLLPSI+EC K  V+T++QALE+LDK             EG A   
Sbjct: 273  EVTQMVGRDPRYSFLLLPSIEECTKCKVYTREQALEYLDKL------------EGAAFSA 320

Query: 1004 LRDVFIANVPVHQHNFRPKCMYVAVMLRRMMEAYLNKDAMDDKDYVGNKRLELSGQLISL 1183
            LRDVF+ANVPV Q NFRPKC+YVAVM+RR+M+A LNKDAMDDKDYVGNKRLELSGQLISL
Sbjct: 321  LRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISL 380

Query: 1184 LFEDLFKTANSDIKKRVDAVLAK--RSTQFDFLQYIKG--DIITRGLENAMATGNWDLKR 1351
            LFEDLFK+  +++K   D +L K  ++  FD    +     IIT GLE  ++TGN+++KR
Sbjct: 381  LFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLGLERTLSTGNFEIKR 440

Query: 1352 FKMHRKGMTQVLARLSFIASLGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 1531
            F+M RKGMTQVL RLSFI +LGHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 441  FRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 500

Query: 1532 SCGLVKNLALMTHVTTDEEDGPLVSLCRSLGVEDLELMSGEELHSANSFLVICNGLILGK 1711
            SCGLVKNLALMTHVTTDEE+ PL+SLC SLGVED++ +S EELH+ +SFLVI NGLILGK
Sbjct: 501  SCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSFLVIFNGLILGK 560

Query: 1712 HRKPQHFANALRKLRRAGRIGDFVSVFVNEKQRCVYIASDGGRVCRPLVVADKGVSRIKE 1891
            HR+P HFA A+RKLRRAG+IG+FVSV+VNEKQ CVY+ASDGGRVCRPLV+ADKG+SRIK+
Sbjct: 561  HRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQ 620

Query: 1892 HHMKELRDGARTFNDFLREGLIEYLDVNEQNNALIALYDGEAEPETTHIEIEPFTILGVC 2071
            HHMKEL DG RTF+DFLR+GL+EYLDVNE+NNALIALY+G+A  ETTHIEIEPFTILGV 
Sbjct: 621  HHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVI 680

Query: 2072 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLYRMDSLLYLLVYPQRPLLTTKTIELV 2251
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMDSLLYLLVYPQRPLLTTKTIELV
Sbjct: 681  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELV 740

Query: 2252 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKLSAVCQKYPNNTMD 2431
            GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKK +A+ QK+ N+T D
Sbjct: 741  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSD 800

Query: 2432 RIVRPQRVGRDAERTQLLDDDGLASPGEIIRPYDIYINKQSPINTKSTYE-SSKGLPDNA 2608
            RI+RP R    A R Q+LDDDG+A+PGEI+RPYDIYINKQSPI+T++    S+  LPD+A
Sbjct: 801  RILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSA 860

Query: 2609 YKPSIQTYKGARGETAVVDRVQLNSDKDNNLCFRFIIRHTRRPEVGDKFSSRHGQKGVCG 2788
            Y+ + Q++KG  GE  VVDRV L SDKDNN+C +F+IRHTRRPE+GDKFSSRHGQKGVCG
Sbjct: 861  YRSNAQSFKGNGGE--VVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCG 918

Query: 2789 TIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGEPS 2968
            TI+ QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFHYGSAFGE S
Sbjct: 919  TIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERS 978

Query: 2969 GHADRVEAISETLVKNGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 3148
            GHAD+VE ISETLV  GF+YSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR
Sbjct: 979  GHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1038

Query: 3149 ARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRAC 3328
              GPRVMLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLI+ERLM+SSDPFEVQVC AC
Sbjct: 1039 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTAC 1098

Query: 3329 GMLGYFNHKVKTSVCSSCKNGDNISTMKLPYACKLLFQELQSMNVVPRLKLTEA 3490
            G+LGY+NHK+KT +CSSCKNGDNISTMKLPYACKL+ QELQSMN+VPRLKL +A
Sbjct: 1099 GLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA 1152