BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003532
         (1941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   514   e-143
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   484   e-134
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   471   e-130
ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arab...   462   e-127
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...   451   e-124

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  514 bits (1323), Expect = e-143
 Identities = 271/452 (59%), Positives = 332/452 (73%), Gaps = 8/452 (1%)
 Frame = -1

Query: 1941 HLIELPSDLRVPSNWAKVNSTKRTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEG 1762
            HLIELP D++VPSNW KVNSTK+T+RYHPP                  ACR AWD FL  
Sbjct: 681  HLIELPVDVKVPSNWVKVNSTKKTVRYHPPEVLSALDQLSLANEELMIACRGAWDSFLRA 740

Query: 1761 FSKYYAEFQASVQALAALDCLYSFAVLSRNKNYVCPVFVDDSESVQIHIHSGRHPVLDLI 1582
            F KY++EFQA+VQALA LDCL+S A+LSRNKNYV PVFV DSE VQ+HI SGRHPVL+ +
Sbjct: 741  FDKYFSEFQAAVQALATLDCLHSLAILSRNKNYVRPVFVGDSEPVQMHICSGRHPVLETV 800

Query: 1581 LQDSFVPNDTDLNAEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVL 1402
            LQD+FVPNDT+L+A+GEYC+IVTGPNMGGKSCYIRQVAL++IMAQVGSFVPASSAKL VL
Sbjct: 801  LQDNFVPNDTNLHADGEYCEIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLCVL 860

Query: 1401 DGIYTRMGASDNIQQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYA 1222
            DGI+TRMG+SD+IQQGRSTFLEELSEAS+I+ N TSRSLVIIDELGRGTSTHDGVAIAYA
Sbjct: 861  DGIHTRMGSSDSIQQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTSTHDGVAIAYA 920

Query: 1221 TLHHLL-GKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEV------TDSEL 1063
            TLH+LL  K+CM+LFVTHYPKIVD+KN+FP SVG YHVSY+ S+ A ++      TDS+ 
Sbjct: 921  TLHYLLEHKRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMMSQRAMDMDTDTDKTDSKS 980

Query: 1062 DCN-ENMERGDITFLYKVVPGTSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVACRM 886
            D N + M+  D+T+LYK+VPG S++SFG  VA+LAQLPS          A+LE ++  R+
Sbjct: 981  DKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAELEAMIVSRV 1040

Query: 885  ANQQGKKLLLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLKNLAELTDACHE 706
             N   +K       T +G+ Q                + S  +G    + +    DAC E
Sbjct: 1041 KNSSAQK-------TLQGSQQ----------------SISIQSGCSRAEQIGLEEDACRE 1077

Query: 705  VFANLKCALGHSDPMKSFQSLEHASNLAVELM 610
             F +LK ALG++DP +S Q L+HA ++A EL+
Sbjct: 1078 FFLDLKSALGNADPERSLQFLKHARSIAKELI 1109


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
            gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
            MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  484 bits (1245), Expect = e-134
 Identities = 262/447 (58%), Positives = 315/447 (70%), Gaps = 1/447 (0%)
 Frame = -1

Query: 1941 HLIELPSDLRVPSNWAKVNSTKRTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEG 1762
            HLIELP+D++VP NW K+NSTK+ IRYHPP                   CR+AWD FL  
Sbjct: 672  HLIELPADVKVPLNWVKINSTKKMIRYHPPEVLTALDQLALANEELMVVCRAAWDSFLRS 731

Query: 1761 FSKYYAEFQASVQALAALDCLYSFAVLSRNKNYVCPVFVDDSESVQIHIHSGRHPVLDLI 1582
            F+K+YAEFQA +QALAALDCL+S A+LS+NKNYV PVFVDD+E VQIHI SGRHPVL+ I
Sbjct: 732  FAKHYAEFQAVIQALAALDCLHSLAILSKNKNYVRPVFVDDNEPVQIHISSGRHPVLETI 791

Query: 1581 LQDSFVPNDTDLNAEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVL 1402
            L D+FVPNDT L+ +GE+CQ+VTGPNMGGKSCYIRQVAL+ +MAQVGSFVPASSAKLHVL
Sbjct: 792  LLDNFVPNDTCLHVDGEHCQVVTGPNMGGKSCYIRQVALIVMMAQVGSFVPASSAKLHVL 851

Query: 1401 DGIYTRMGASDNIQQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYA 1222
            DGIYTRMGASD+IQQGRSTFLEELSE S+IL   T  SLVIIDELGRGTSTHDG AIAYA
Sbjct: 852  DGIYTRMGASDSIQQGRSTFLEELSETSHILRKCTGYSLVIIDELGRGTSTHDGEAIAYA 911

Query: 1221 TLHHLL-GKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEVTDSELDCNENM 1045
            TL HLL  K+CM+LFVTHYPKI +I+  F  SVG YHVSYL +E   + TDS+ D NE  
Sbjct: 912  TLCHLLEQKRCMVLFVTHYPKIANIRTGFLNSVGAYHVSYLMAEKNNDATDSKFD-NE-- 968

Query: 1044 ERGDITFLYKVVPGTSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVACRMANQQGKK 865
               D+T+LYK+VPG S++SFG  VA+LAQLP+          A+LEE ++CR+ N+  K 
Sbjct: 969  ---DVTYLYKLVPGVSERSFGFKVAQLAQLPTSCIERATVMAARLEEAISCRIRNRLDKS 1025

Query: 864  LLLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLKNLAELTDACHEVFANLKC 685
             LL         +Q+           E   N+        ++N  EL +   + F N K 
Sbjct: 1026 QLLKA-------LQIDQLQEIQEKIPESPGNFHDKR----IENYEELNNTYEKFFLNFKS 1074

Query: 684  ALGHSDPMKSFQSLEHASNLAVELMKR 604
            AL   D  KSFQ LE+A ++A  L+KR
Sbjct: 1075 AL-LGDDAKSFQYLENARSIARALIKR 1100


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  471 bits (1212), Expect = e-130
 Identities = 262/452 (57%), Positives = 312/452 (69%), Gaps = 1/452 (0%)
 Frame = -1

Query: 1941 HLIELPSDLRVPSNWAKVNSTKRTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEG 1762
            HLIEL +D++VPSNW KVNSTK+TIRYHPP                  ACR+AW+ FL  
Sbjct: 648  HLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVLTTLDKLSLAKEELTVACRAAWNNFLTD 707

Query: 1761 FSKYYAEFQASVQALAALDCLYSFAVLSRNKNYVCPVFVDDSESVQIHIHSGRHPVLDLI 1582
            FSK+YAEFQA+VQALAALDCL+S A+LSRNK YVCPVFVDD E VQI I SGRHPVL+  
Sbjct: 708  FSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVCPVFVDDHEPVQIQISSGRHPVLETT 767

Query: 1581 LQDSFVPNDTDLNAEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVL 1402
            LQD+FVPNDT+++A+GEYCQIVTGPNMGGKSCYIRQVAL+ IMAQVGSFVPASSAKLHVL
Sbjct: 768  LQDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSAKLHVL 827

Query: 1401 DGIYTRMGASDNIQQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYA 1222
            D IYTRMGASD+IQ GRSTFLEELSE S+IL + T  SLVIIDELGRGTSTHDG+AIA+A
Sbjct: 828  DRIYTRMGASDSIQLGRSTFLEELSETSHILNSCTEHSLVIIDELGRGTSTHDGMAIAHA 887

Query: 1221 TLHHLL-GKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEVTDSELDCNENM 1045
            TLH+LL  K+ M+LFVTHYPKI  +  +FP SV  YHVS+L S +A +        N N+
Sbjct: 888  TLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLISHDASK--------NSNL 939

Query: 1044 ERGDITFLYKVVPGTSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVACRMANQQGKK 865
            +  D+T+LYK+VPG S++SFG  VA+LAQLPS          +KLE LV  R+  +  K+
Sbjct: 940  DH-DVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSTKE 998

Query: 864  LLLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLKNLAELTDACHEVFANLKC 685
            LLLDT                     EQL   S        +   E   A  + + NLK 
Sbjct: 999  LLLDT--------------LVIGQEKEQLMAQSLD------RPHKEFDMAYKDFYLNLKA 1038

Query: 684  ALGHSDPMKSFQSLEHASNLAVELMKRLAVHV 589
            A    D  KSF  LEHA ++A +L+ R   +V
Sbjct: 1039 ATEDDDWAKSFHLLEHARSIAKKLIGRSMQYV 1070


>ref|XP_002867605.1| hypothetical protein ARALYDRAFT_492273 [Arabidopsis lyrata subsp.
            lyrata] gi|297313441|gb|EFH43864.1| hypothetical protein
            ARALYDRAFT_492273 [Arabidopsis lyrata subsp. lyrata]
          Length = 1078

 Score =  462 bits (1190), Expect = e-127
 Identities = 249/443 (56%), Positives = 296/443 (66%), Gaps = 1/443 (0%)
 Frame = -1

Query: 1941 HLIELPSDLRVPSNWAKVNSTKRTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEG 1762
            HLIELP D +VP NW KVNSTK+TIRYHPP                    R++WD FLE 
Sbjct: 672  HLIELPVDAKVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLES 731

Query: 1761 FSKYYAEFQASVQALAALDCLYSFAVLSRNKNYVCPVFVDDSESVQIHIHSGRHPVLDLI 1582
            FS+YY +FQA+VQALAALDCL+S A LS+NK YVCPVFVDD E V+I+I SGRHPVL+ +
Sbjct: 732  FSRYYTDFQAAVQALAALDCLHSLATLSKNKKYVCPVFVDDCEPVEINIQSGRHPVLETL 791

Query: 1581 LQDSFVPNDTDLNAEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVL 1402
            LQD+FVPNDT L+AEGEYCQI+TGPNMGGKSCYIRQVAL+SIMAQVGSFVPASS KLHVL
Sbjct: 792  LQDNFVPNDTSLHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASSVKLHVL 851

Query: 1401 DGIYTRMGASDNIQQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYA 1222
            DG++TRMGASD+IQ GRSTFLEELSEAS+I+   +SRSLVI+DELGRGTSTHDGVAIAYA
Sbjct: 852  DGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYA 911

Query: 1221 TLHH-LLGKKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEVTDSELDCNENM 1045
            TL H LL K+C++LFVTHYP+I +I N F  SVG YHVSYLTS+  +   D +       
Sbjct: 912  TLQHLLLEKRCLVLFVTHYPEIAEISNGFRGSVGTYHVSYLTSQKKKSGFDHD------- 964

Query: 1044 ERGDITFLYKVVPGTSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVACRMANQQGKK 865
               D+T+LYK+V G   +SFG  VA+LAQ+PS          AKLE  V  R  N     
Sbjct: 965  ---DVTYLYKLVRGLCSRSFGFKVAQLAQIPSSCIRRAISMGAKLEAEVGARERN----- 1016

Query: 864  LLLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLKNLAELTDACHEVFANLKC 685
                   T  G  +                 +      G      E   A  ++FA+LK 
Sbjct: 1017 -------TRMGEAE----------------GHEEHGAPGDWTGAEESISALGDLFADLKF 1053

Query: 684  ALGHSDPMKSFQSLEHASNLAVE 616
            AL   DP K+F+ L HA  +A +
Sbjct: 1054 ALSEEDPWKAFEFLNHAWKIAAK 1076


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
            predicted protein [Populus trichocarpa]
          Length = 1092

 Score =  451 bits (1161), Expect = e-124
 Identities = 247/447 (55%), Positives = 304/447 (68%), Gaps = 1/447 (0%)
 Frame = -1

Query: 1941 HLIELPSDLRVPSNWAKVNSTKRTIRYHPPXXXXXXXXXXXXXXXXXXACRSAWDRFLEG 1762
            HLIELP D +VP NW KVNSTK+ IRYHPP                    R+AWD FL G
Sbjct: 683  HLIELPLDFKVPLNWVKVNSTKKMIRYHPPEVLTALDQLLLANEELMIVSRAAWDSFLRG 742

Query: 1761 FSKYYAEFQASVQALAALDCLYSFAVLSRNKNYVCPVFVDDSESVQIHIHSGRHPVLDLI 1582
            F  YYAEF+ +VQALA LDCL+SFA L +NKNYV P+FVDDSE +QI+I SGRHPVL+ I
Sbjct: 743  FGIYYAEFRGAVQALATLDCLFSFATLLKNKNYVRPMFVDDSEPLQINICSGRHPVLETI 802

Query: 1581 LQDSFVPNDTDLNAEGEYCQIVTGPNMGGKSCYIRQVALLSIMAQVGSFVPASSAKLHVL 1402
            LQD+FVPNDT+L A+ EYCQIVTGPNMGGKSCYIRQVAL+++MAQVGSFVPA SAKLHVL
Sbjct: 803  LQDNFVPNDTNLCADKEYCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVL 862

Query: 1401 DGIYTRMGASDNIQQGRSTFLEELSEASNILCNSTSRSLVIIDELGRGTSTHDGVAIAYA 1222
            DGIYTRMGASD+IQQGRSTFLEEL++           SLVIIDELGRGTST+DG AIAYA
Sbjct: 863  DGIYTRMGASDSIQQGRSTFLEELTQ-----------SLVIIDELGRGTSTYDGEAIAYA 911

Query: 1221 TLHHLLG-KKCMILFVTHYPKIVDIKNDFPKSVGDYHVSYLTSENAQEVTDSELDCNENM 1045
            TL+HLL  K+CM+LFVTHYPKIV+IK +FP SVG YHVSYLTSE ++   +S  D     
Sbjct: 912  TLYHLLDQKRCMVLFVTHYPKIVEIKTEFPGSVGAYHVSYLTSEKSEGAIESTCDTE--- 968

Query: 1044 ERGDITFLYKVVPGTSDKSFGLNVARLAQLPSXXXXXXXXXXAKLEELVACRMANQQGKK 865
               D+T+LYK+VPG S+KSFG  VA+LA+LP           A+LE +++ R+ N+Q   
Sbjct: 969  ---DVTYLYKLVPGVSEKSFGFKVAQLAELPPSCIRRATIMAARLEAVLSSRLGNEQ--- 1022

Query: 864  LLLDTESTFEGNVQVXXXXXXXXSAGEQLCNYSSINGTGGLKNLAELTDACHEVFANLKC 685
             LL+T    +                ++    + +     ++   + T A  E F+NLK 
Sbjct: 1023 -LLETLPVQQ----------------QEEAQENMLRSDVRIEKSEDSTVAYREFFSNLKS 1065

Query: 684  ALGHSDPMKSFQSLEHASNLAVELMKR 604
            A+   D  +S Q LE A ++A E + +
Sbjct: 1066 AMFDDDVARSSQFLEKARSIAKEFLAK 1092