BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003526
         (1201 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein C...   459   e-127
prf||1908421A light-harvesting complex IIa protein                    457   e-126
ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago tr...   455   e-126
gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK...   455   e-126
ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein C...   455   e-125

>ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
            [Vitis vinifera] gi|147784938|emb|CAN77492.1|
            hypothetical protein VITISV_010727 [Vitis vinifera]
          Length = 288

 Score =  459 bits (1180), Expect = e-127
 Identities = 225/268 (83%), Positives = 240/268 (89%)
 Frame = -2

Query: 1068 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGATAPEYLDGTL 889
            S F+GTRL +   SN+GR QARFGFG              +DRPLWFPGA APE+LDGTL
Sbjct: 13   SSFMGTRLPDVH-SNTGRVQARFGFGRKKAPAKKAAKR-VSDRPLWFPGAVAPEWLDGTL 70

Query: 888  VGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFEDAEVKSTPFQPYSEVFG 709
            VGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN+AGDVIGTRFE  EVKSTPFQPY+EVFG
Sbjct: 71   VGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQPYTEVFG 130

Query: 708  LQRFRECELIHGRWAMLATLGALTVESITGVTWQDAGKVELIDGSSYLGLPLPFTITTLI 529
            LQRFRECELIHGRWAMLATLGAL VES+TGVTWQDAGKVELI+GSSYLG PLPF++TTLI
Sbjct: 131  LQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEGSSYLGQPLPFSMTTLI 190

Query: 528  WIEVLLIGYIEFQRNAELDPEMRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMVG 349
            WIEVL+IGYIEFQRNAELDPE RLYPGGKFFDPLGLAADPEKKA+LQLAEIKHARLAM+G
Sbjct: 191  WIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIG 250

Query: 348  FLGFAVQAAATGKGPLNNWATHLSDPLH 265
            FLGFAVQAA TGKGPLNNWATHLSDPLH
Sbjct: 251  FLGFAVQAAVTGKGPLNNWATHLSDPLH 278


>prf||1908421A light-harvesting complex IIa protein
          Length = 286

 Score =  457 bits (1177), Expect = e-126
 Identities = 226/268 (84%), Positives = 238/268 (88%)
 Frame = -2

Query: 1068 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGATAPEYLDGTL 889
            S FLGTRL +    N GR  ARFGFG            PTTDRPLWFPGA APEYLDGTL
Sbjct: 10   STFLGTRLADPRPQN-GRIVARFGFGKKKAPPKKAKAPPTTDRPLWFPGAQAPEYLDGTL 68

Query: 888  VGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFEDAEVKSTPFQPYSEVFG 709
            VGDYGFDPFGLGKPAEYLQ+D+DSLDQNLA+NLAG++IGTRFEDA+VKSTPFQPY+EVFG
Sbjct: 69   VGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPYAEVFG 128

Query: 708  LQRFRECELIHGRWAMLATLGALTVESITGVTWQDAGKVELIDGSSYLGLPLPFTITTLI 529
            LQRFRECELIHGRWAMLATLGALTVE +TGVTWQDAGKVEL+DGSSYLG PLPFTITTLI
Sbjct: 129  LQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTITTLI 188

Query: 528  WIEVLLIGYIEFQRNAELDPEMRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMVG 349
            WIEVL+IGYIEFQRNAELDPE RLYPGG +FDPLGLAADPEKK  LQLAEIKHARLAMV 
Sbjct: 189  WIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVA 248

Query: 348  FLGFAVQAAATGKGPLNNWATHLSDPLH 265
            FLGFAVQAAATGKG LNNWATHLSDPLH
Sbjct: 249  FLGFAVQAAATGKGRLNNWATHLSDPLH 276


>ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
            gi|355505708|gb|AES86850.1| Chlorophyll a-b binding
            protein [Medicago truncatula]
          Length = 347

 Score =  455 bits (1171), Expect = e-126
 Identities = 227/269 (84%), Positives = 241/269 (89%), Gaps = 1/269 (0%)
 Frame = -2

Query: 1068 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGATAPEYLDGT 892
            S F+GTRL+E   SNSGR QARFGFG              +TDRPLWFPGA +PE+LDG+
Sbjct: 70   SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 128

Query: 891  LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFEDAEVKSTPFQPYSEVF 712
            LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTR E A+VKSTPFQPYSEVF
Sbjct: 129  LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVF 188

Query: 711  GLQRFRECELIHGRWAMLATLGALTVESITGVTWQDAGKVELIDGSSYLGLPLPFTITTL 532
            GLQRFRECELIHGRWAMLATLGALTVE +TGVTWQDAGKVEL++GS+YLG PLPF+ITTL
Sbjct: 189  GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTL 248

Query: 531  IWIEVLLIGYIEFQRNAELDPEMRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMV 352
            IWIEVL+IGYIEFQRNAELD E RLYPGGKFFDPLGLA+DPEKKA LQLAEIKHARLAMV
Sbjct: 249  IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 308

Query: 351  GFLGFAVQAAATGKGPLNNWATHLSDPLH 265
             FLGFAVQAAATGKGPLNNWATHLSDPLH
Sbjct: 309  AFLGFAVQAAATGKGPLNNWATHLSDPLH 337


>gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK38567.1| unknown
            [Medicago truncatula]
          Length = 289

 Score =  455 bits (1171), Expect = e-126
 Identities = 227/269 (84%), Positives = 241/269 (89%), Gaps = 1/269 (0%)
 Frame = -2

Query: 1068 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGATAPEYLDGT 892
            S F+GTRL+E   SNSGR QARFGFG              +TDRPLWFPGA +PE+LDG+
Sbjct: 12   SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 70

Query: 891  LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFEDAEVKSTPFQPYSEVF 712
            LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTR E A+VKSTPFQPYSEVF
Sbjct: 71   LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVF 130

Query: 711  GLQRFRECELIHGRWAMLATLGALTVESITGVTWQDAGKVELIDGSSYLGLPLPFTITTL 532
            GLQRFRECELIHGRWAMLATLGALTVE +TGVTWQDAGKVEL++GS+YLG PLPF+ITTL
Sbjct: 131  GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTL 190

Query: 531  IWIEVLLIGYIEFQRNAELDPEMRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMV 352
            IWIEVL+IGYIEFQRNAELD E RLYPGGKFFDPLGLA+DPEKKA LQLAEIKHARLAMV
Sbjct: 191  IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 250

Query: 351  GFLGFAVQAAATGKGPLNNWATHLSDPLH 265
             FLGFAVQAAATGKGPLNNWATHLSDPLH
Sbjct: 251  AFLGFAVQAAATGKGPLNNWATHLSDPLH 279


>ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic-like
            [Cucumis sativus] gi|449516143|ref|XP_004165107.1|
            PREDICTED: chlorophyll a-b binding protein CP29.2,
            chloroplastic-like [Cucumis sativus]
          Length = 284

 Score =  455 bits (1170), Expect = e-125
 Identities = 224/269 (83%), Positives = 240/269 (89%), Gaps = 1/269 (0%)
 Frame = -2

Query: 1068 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPT-TDRPLWFPGATAPEYLDGT 892
            S FLGTRL E  + +SGR QARFGFG               +DRPLWFPGA APE+LDG+
Sbjct: 8    SSFLGTRLAEI-VPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPEWLDGS 66

Query: 891  LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFEDAEVKSTPFQPYSEVF 712
            LVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+AGD+IGTRFE AEVKSTPFQPY+EVF
Sbjct: 67   LVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVF 126

Query: 711  GLQRFRECELIHGRWAMLATLGALTVESITGVTWQDAGKVELIDGSSYLGLPLPFTITTL 532
            GLQRFRECELIHGRWAMLATLGAL+VE +TGVTWQDAGKVEL++GSSYLG PLPF+ITTL
Sbjct: 127  GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 186

Query: 531  IWIEVLLIGYIEFQRNAELDPEMRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARLAMV 352
            IWIEVL+IGYIEFQRNAELDPE RLYPGGKFFDPLGLA DPEKKA+LQLAEIKHARLAMV
Sbjct: 187  IWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMV 246

Query: 351  GFLGFAVQAAATGKGPLNNWATHLSDPLH 265
             FLGFAVQAA TGKGPLNNWATHLSDPLH
Sbjct: 247  AFLGFAVQAAVTGKGPLNNWATHLSDPLH 275