BLASTX nr result
ID: Coptis25_contig00003468
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003468
(608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi... 159 3e-46
gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays] 144 2e-41
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi... 149 3e-41
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi... 152 5e-41
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi... 150 4e-40
>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 590
Score = 159 bits (403), Expect(2) = 3e-46
Identities = 79/125 (63%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 IIHAHAFVAGH-TEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQ 178
IIH HA G + ++VGTALVDGYGK+G V DARR+FDE+L ++N + WNA+MA YAQQ
Sbjct: 233 IIHGHAVSTGFDSNLIVGTALVDGYGKAGLVLDARRIFDELLPSLNEVAWNAMMAGYAQQ 292
Query: 179 GDVNSAIELFDGMKQRGFVADELSFLAILTACRNAGLVVEAEKWLNCMISDYEVEPGLEH 358
GD S +ELF+ M+ RG V DE SFLAILT+ NAGLV EAE WL M DY +EPGLEH
Sbjct: 293 GDQRSVVELFNSMEARGLVPDEYSFLAILTSLYNAGLVGEAEGWLTRMKVDYGLEPGLEH 352
Query: 359 YTCVV 373
YTC+V
Sbjct: 353 YTCLV 357
Score = 51.6 bits (122), Expect(2) = 3e-46
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +3
Query: 477 VCRLLLSACAIHGETEMASEMAQKLLEKNSQDDSAYAILANVHA 608
V R LLS+CA+HG +MA M ++L+E + QDDSAY I+ANV A
Sbjct: 384 VWRALLSSCAMHGAADMAWAMGRRLMELDPQDDSAYVIVANVLA 427
>gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays]
Length = 572
Score = 144 bits (364), Expect(2) = 2e-41
Identities = 73/124 (58%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Frame = +2
Query: 5 IHAHAFVAG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQG 181
IHAHA V G V VGTALVD YGK+G V DA RVF + ++ N+I WN +++A+AQQG
Sbjct: 232 IHAHAVVVGLDGNVCVGTALVDAYGKAGGVDDAARVFKGLGADRNLITWNTVLSAHAQQG 291
Query: 182 DVNSAIELFDGMKQRGFVADELSFLAILTACRNAGLVVEAEKWLNCMISDYEVEPGLEHY 361
DV + I LF+ M + GF D L+FLA+LTAC NAG EAE WL M S Y V+PGLEHY
Sbjct: 292 DVQAVIGLFNQMMELGFAPDGLTFLAVLTACSNAGAATEAEFWLETMQSKYSVKPGLEHY 351
Query: 362 TCVV 373
TCVV
Sbjct: 352 TCVV 355
Score = 50.1 bits (118), Expect(2) = 2e-41
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 477 VCRLLLSACAIHGETEMASEMAQKLLEKNSQDDSAYAILANVHA 608
V R LL C +H + ++A M Q+LLE N +DDSAY +LANV++
Sbjct: 382 VWRTLLMGCVVHRKVDLAESMGQRLLEINPKDDSAYVLLANVYS 425
>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
gi|449487598|ref|XP_004157706.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 583
Score = 149 bits (375), Expect(2) = 3e-41
Identities = 72/125 (57%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 IIHAHAFVAG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQ 178
+IH+HA V G T V+V TAL+DGYGKSG + DAR+VFDE L MNI+GWNA++++YAQQ
Sbjct: 229 VIHSHAVVTGLDTNVIVQTALIDGYGKSGLIIDARQVFDENLGCMNIVGWNAMLSSYAQQ 288
Query: 179 GDVNSAIELFDGMKQRGFVADELSFLAILTACRNAGLVVEAEKWLNCMISDYEVEPGLEH 358
GD NS +E+F+ MK G DE SFLAIL++ N+GLV E + WL MI +Y V+P LEH
Sbjct: 289 GDQNSTLEVFNSMKPFGMSPDEYSFLAILSSFCNSGLVSEIKPWLRRMIVEYGVKPTLEH 348
Query: 359 YTCVV 373
+TC++
Sbjct: 349 FTCLI 353
Score = 45.4 bits (106), Expect(2) = 3e-41
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 477 VCRLLLSACAIHGETEMASEMAQKLLEKNSQDDSAYAILAN 599
V R LLS+ A HG +MA MA++LLE N DDSAY I++N
Sbjct: 380 VWRALLSSSASHGAGDMAWTMAKRLLELNQHDDSAYVIVSN 420
>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 561
Score = 152 bits (383), Expect(2) = 5e-41
Identities = 74/125 (59%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 IIHAHAFVAG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQ 178
++HAHA V G + VVVG+ALVDGYGK+G V+DARRVF++ L +MN++GWNA+MA YAQQ
Sbjct: 220 MMHAHAVVLGLDSNVVVGSALVDGYGKAGVVNDARRVFEDNLDDMNVVGWNAMMAGYAQQ 279
Query: 179 GDVNSAIELFDGMKQRGFVADELSFLAILTACRNAGLVVEAEKWLNCMISDYEVEPGLEH 358
GD SA ELF+ ++ G V DE +FLAILTA NAG+ +E W M DY +EP LEH
Sbjct: 280 GDYQSAFELFESLEGCGLVPDEYTFLAILTALCNAGMFLEIAPWFTRMRVDYGLEPSLEH 339
Query: 359 YTCVV 373
YTC+V
Sbjct: 340 YTCLV 344
Score = 41.6 bits (96), Expect(2) = 5e-41
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 477 VCRLLLSACAIHGETEMASEMAQKLLEKNSQDDSAYAILANV 602
V R LLS CA GE + A MA+++LE DD AY +ANV
Sbjct: 371 VWRALLSVCAYRGEADKAWSMAKRVLELEPNDDYAYVSVANV 412
>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 561
Score = 150 bits (379), Expect(2) = 4e-40
Identities = 73/125 (58%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 IIHAHAFVAG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQ 178
++HAHA +AG + VVVG+A+VDGYGK+G V DARRVF++ L +MNI GWNA+MA YAQ
Sbjct: 220 MMHAHAIIAGLDSNVVVGSAVVDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQH 279
Query: 179 GDVNSAIELFDGMKQRGFVADELSFLAILTACRNAGLVVEAEKWLNCMISDYEVEPGLEH 358
GD SA ELF+ ++ G V DE +FLAILTA NAG+ +E +W M DY +EP LEH
Sbjct: 280 GDYQSAFELFESLEGFGLVPDEYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEH 339
Query: 359 YTCVV 373
YTC+V
Sbjct: 340 YTCLV 344
Score = 40.0 bits (92), Expect(2) = 4e-40
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 477 VCRLLLSACAIHGETEMASEMAQKLLEKNSQDDSAYAILANV 602
V R LLS CA GE + A MA+++LE DD AY +ANV
Sbjct: 371 VWRALLSVCAYRGEADKAWCMAKRVLELEPHDDYAYVSVANV 412