BLASTX nr result
ID: Coptis25_contig00003467
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003467
(839 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi... 199 2e-64
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi... 162 3e-55
ref|NP_001147836.1| vegetative storage protein [Zea mays] gi|195... 172 2e-52
tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays] 170 7e-52
gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays] 174 4e-51
>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 590
Score = 199 bits (507), Expect(3) = 2e-64
Identities = 105/181 (58%), Positives = 126/181 (69%)
Frame = +2
Query: 14 ENCFLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXXT 193
E FLAILT+ NAGLV EAE WL M DY +EPGLEHYTC+VG
Sbjct: 314 EYSFLAILTSLYNAGLVGEAEGWLTRMKVDYGLEPGLEHYTCLVGTMGRAGQLEDAERIA 373
Query: 194 KTMPFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSQDDSAYAILANVHAASKSWD 373
TMPF PDAAV R LLS+CA+HG +MA M ++L+E + QDDSAY I+ANV A + WD
Sbjct: 374 MTMPFEPDAAVWRALLSSCAMHGAADMAWAMGRRLMELDPQDDSAYVIVANVLATNGRWD 433
Query: 374 KVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSRDTRHERTKEVYDKLEELMEAMWKLG 553
+VA+VRKMMK V+KE GRSWIEVRG+VH F + D RHER+ E+Y KL ELME + +LG
Sbjct: 434 EVAEVRKMMKDRMVKKEGGRSWIEVRGKVHVFLAGDRRHERSHEIYAKLVELMEKIEELG 493
Query: 554 Y 556
Y
Sbjct: 494 Y 494
Score = 57.0 bits (136), Expect(3) = 2e-64
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 715 KILGICKDCH*ALKYMSIVIKWEILVRDVNRYHRFMH 825
K L ICKDCH A KY+S V++ EI+VRDVNRYHRF++
Sbjct: 531 KNLRICKDCHEAFKYISCVVEREIIVRDVNRYHRFLN 567
Score = 37.4 bits (85), Expect(3) = 2e-64
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 561 KLGYKEVSDALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXXQGKALRVVKNSR 725
+LGYKE ++TLWYHSEK GKALR+VKN R
Sbjct: 491 ELGYKE-----------GVKKETLWYHSEKLAVAFGVVSDAAPPGKALRIVKNLR 534
>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
gi|449487598|ref|XP_004157706.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 583
Score = 162 bits (410), Expect(3) = 3e-55
Identities = 86/182 (47%), Positives = 115/182 (63%)
Frame = +2
Query: 14 ENCFLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXXT 193
E FLAIL++ N+GLV E + WL MI +Y V+P LEH+TC++
Sbjct: 310 EYSFLAILSSFCNSGLVSEIKPWLRRMIVEYGVKPTLEHFTCLIDALGRTGKLEEAERVA 369
Query: 194 KTMPFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSQDDSAYAILANVHAASKSWD 373
TMPF PD AV R LLS+ A HG +MA M ++LLE N DDSAY I++N + + W+
Sbjct: 370 MTMPFVPDEAVWRALLSSSASHGAGDMAWTMAKRLLELNQHDDSAYVIVSNALSVAARWE 429
Query: 374 KVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSRDTRHERTKEVYDKLEELMEAMWKLG 553
+VA VRK+MK V+K G+SWIEVRGE H F + D HER +E+ KL+EL+ + KLG
Sbjct: 430 EVALVRKLMKERHVKKISGKSWIEVRGEAHVFLAGDRNHERAEEMNAKLKELVGEIEKLG 489
Query: 554 YL 559
Y+
Sbjct: 490 YV 491
Score = 61.2 bits (147), Expect(3) = 3e-55
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +1
Query: 715 KILGICKDCH*ALKYMSIVIKWEILVRDVNRYHRFMHGSCT 837
K L IC+DCH KY S V+K EI+VRD+NRYHRF +GSCT
Sbjct: 538 KNLRICRDCHLFFKYASRVLKKEIIVRDINRYHRFSYGSCT 578
Score = 39.7 bits (91), Expect(3) = 3e-55
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 552 DTSKLGYKEVSDALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXXQGKALRVVKNSR 725
+ KLGY V LH + ++ L YHSEK GKALR++KN R
Sbjct: 484 EIEKLGYVPVCSETLHKVGEKERKEALLYHSEKLALAYGILTGVAPPGKALRIIKNLR 541
>ref|NP_001147836.1| vegetative storage protein [Zea mays] gi|195614038|gb|ACG28849.1|
vegetative storage protein [Zea mays]
Length = 563
Score = 172 bits (436), Expect(3) = 2e-52
Identities = 90/178 (50%), Positives = 112/178 (62%)
Frame = +2
Query: 23 FLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXXTKTM 202
FLA+LT+C NAG EA+ WL M S Y V+P LEHYTCVVG TM
Sbjct: 306 FLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAESFACTM 365
Query: 203 PFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSQDDSAYAILANVHAASKSWDKVA 382
P PDAAV R LL C +H +MA M Q+LLE N +DDSAY +LANV++ + D+ A
Sbjct: 366 PCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAGKTDEEA 425
Query: 383 DVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSRDTRHERTKEVYDKLEELMEAMWKLGY 556
+ M+ VRKE GRSWIEVRG VH F + + RHE+ E+YDKL EL++ + KLGY
Sbjct: 426 EAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVEKLGY 483
Score = 45.8 bits (107), Expect(3) = 2e-52
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 715 KILGICKDCH*ALKYMSIVIKWEILVRDVNRYHRFMHGSCT 837
K L IC CH KY S+VI I+VRDVNRYH G C+
Sbjct: 518 KNLRICAHCHEFFKYASMVIDRVIVVRDVNRYHTIKKGDCS 558
Score = 35.4 bits (80), Expect(3) = 2e-52
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +3
Query: 552 DTSKLGYKEVSDALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXXQGKALRVVKNSR 725
+ KLGYKE AD+R LW+HSE+ GK LR+VKN R
Sbjct: 477 EVEKLGYKE-----------ADER--LWHHSERLALAYGLISGAAPSGKVLRIVKNLR 521
>tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays]
Length = 563
Score = 170 bits (431), Expect(3) = 7e-52
Identities = 89/178 (50%), Positives = 112/178 (62%)
Frame = +2
Query: 23 FLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXXTKTM 202
FLA+LT+C NAG EA+ WL M S Y V+P LEHYTCVVG TM
Sbjct: 306 FLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAESFACTM 365
Query: 203 PFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSQDDSAYAILANVHAASKSWDKVA 382
P PDAAV R LL C +H +MA M Q+LLE N +DDSAY +LANV++ + ++ A
Sbjct: 366 PCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAGKTNEEA 425
Query: 383 DVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSRDTRHERTKEVYDKLEELMEAMWKLGY 556
+ M+ VRKE GRSWIEVRG VH F + + RHE+ E+YDKL EL++ + KLGY
Sbjct: 426 EAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVEKLGY 483
Score = 45.8 bits (107), Expect(3) = 7e-52
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 715 KILGICKDCH*ALKYMSIVIKWEILVRDVNRYHRFMHGSCT 837
K L IC CH KY S+VI I+VRDVNRYH G C+
Sbjct: 518 KNLRICAHCHEFFKYASMVIDRVIVVRDVNRYHTIKKGDCS 558
Score = 35.4 bits (80), Expect(3) = 7e-52
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +3
Query: 552 DTSKLGYKEVSDALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXXQGKALRVVKNSR 725
+ KLGYKE AD+R LW+HSE+ GK LR+VKN R
Sbjct: 477 EVEKLGYKE-----------ADER--LWHHSERLALAYGLISGAAPSGKVLRIVKNLR 521
>gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays]
Length = 572
Score = 174 bits (442), Expect(3) = 4e-51
Identities = 92/178 (51%), Positives = 114/178 (64%)
Frame = +2
Query: 23 FLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXXTKTM 202
FLA+LTAC NAG EAE WL M S Y V+PGLEHYTCVVG TM
Sbjct: 315 FLAVLTACSNAGAATEAEFWLETMQSKYSVKPGLEHYTCVVGAMARMGRLEDAESVACTM 374
Query: 203 PFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSQDDSAYAILANVHAASKSWDKVA 382
P PDAAV R LL C +H + ++A M Q+LLE N +DDSAY +LANV++A+ ++ A
Sbjct: 375 PCKPDAAVWRTLLMGCVVHRKVDLAESMGQRLLEINPKDDSAYVLLANVYSAAGKKNEEA 434
Query: 383 DVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSRDTRHERTKEVYDKLEELMEAMWKLGY 556
+ M+ VRKE GRSWIEVRG VH F + + RHE+ E+YDKL EL+ + KLGY
Sbjct: 435 EAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLTELILEVEKLGY 492
Score = 45.8 bits (107), Expect(3) = 4e-51
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 715 KILGICKDCH*ALKYMSIVIKWEILVRDVNRYHRFMHGSCT 837
K L IC CH KY S+VI I+VRDVNRYH G C+
Sbjct: 527 KNLRICAHCHEFFKYASMVIDRVIVVRDVNRYHTIKKGDCS 567
Score = 28.9 bits (63), Expect(3) = 4e-51
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = +3
Query: 552 DTSKLGYKEVSDALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXXQGKALRVVKNSR 725
+ KLGYKE + H HSE+ GK LR+VKN R
Sbjct: 486 EVEKLGYKETDEGFGH-------------HSERLALAYGLISGAAPSGKVLRIVKNLR 530