BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003439
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom...   191   7e-47
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae...   191   7e-47
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...   191   7e-47
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   191   7e-47
gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum ...   191   7e-47

>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score =  191 bits (484), Expect = 7e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = -2

Query: 303 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 124
           DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 242 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 301

Query: 123 FSRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 22
           F RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 302 FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 335


>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score =  191 bits (484), Expect = 7e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = -2

Query: 303 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 124
           DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 243 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 302

Query: 123 FSRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 22
           F RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 303 FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 336


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  191 bits (484), Expect = 7e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = -2

Query: 303 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 124
           DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 239 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 298

Query: 123 FSRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 22
           F RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 299 FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 332


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  191 bits (484), Expect = 7e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = -2

Query: 303  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 124
            DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 754  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 813

Query: 123  FSRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 22
            F RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 814  FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 847


>gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score =  191 bits (484), Expect = 7e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = -2

Query: 303 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 124
           DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 235 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 294

Query: 123 FSRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 22
           F RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 295 FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 328