BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003438
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom...    89   5e-16
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae...    89   5e-16
gb|AAB94061.1| RPB140 [Magnolia virginiana]                            89   5e-16
emb|CAD88979.1| DNA-directed RNA polymerase subunit B [Cornus ko...    89   5e-16
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...    89   5e-16

>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/63 (76%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   STYCLCKDTLAIWHTFSTNPQKPLVTTCAMEQLHFRQLPAGINAIVAIACYSGYNQEDSV 181
           + Y L  DTLA    +   PQKPLVTT AME LHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 235 TNYQLRMDTLAYVLYY---PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 291

Query: 182 IMN 190
           IMN
Sbjct: 292 IMN 294


>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/63 (76%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   STYCLCKDTLAIWHTFSTNPQKPLVTTCAMEQLHFRQLPAGINAIVAIACYSGYNQEDSV 181
           + Y L  DTLA    +   PQKPLVTT AME LHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 236 TNYQLRMDTLAYVLYY---PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 292

Query: 182 IMN 190
           IMN
Sbjct: 293 IMN 295


>gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/63 (76%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   STYCLCKDTLAIWHTFSTNPQKPLVTTCAMEQLHFRQLPAGINAIVAIACYSGYNQEDSV 181
           + Y L  DTLA    +   PQKPLVTT AME LHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 236 TNYQLRMDTLAYVLYY---PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 292

Query: 182 IMN 190
           IMN
Sbjct: 293 IMN 295


>emb|CAD88979.1| DNA-directed RNA polymerase subunit B [Cornus kousa]
          Length = 317

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/63 (76%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   STYCLCKDTLAIWHTFSTNPQKPLVTTCAMEQLHFRQLPAGINAIVAIACYSGYNQEDSV 181
           + Y L  DTLA    +   PQKPLVTT AME LHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 11  TNYQLRMDTLAYVLYY---PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 67

Query: 182 IMN 190
           IMN
Sbjct: 68  IMN 70


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/63 (76%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   STYCLCKDTLAIWHTFSTNPQKPLVTTCAMEQLHFRQLPAGINAIVAIACYSGYNQEDSV 181
           + Y L  DTLA    +   PQKPLVTT AME LHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 232 TNYQLRMDTLAYVLYY---PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 288

Query: 182 IMN 190
           IMN
Sbjct: 289 IMN 291