BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003437
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom...   105   3e-21
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae...   105   3e-21
gb|AAB94061.1| RPB140 [Magnolia virginiana]                           105   3e-21
emb|CAD88979.1| DNA-directed RNA polymerase subunit B [Cornus ko...   105   3e-21
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...   105   3e-21

>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/63 (80%), Positives = 56/63 (88%)
 Frame = +2

Query: 116 STYCLCKDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED*LTVD 295
           + Y L  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED + ++
Sbjct: 235 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 294

Query: 296 SSA 304
            S+
Sbjct: 295 QSS 297


>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/63 (80%), Positives = 56/63 (88%)
 Frame = +2

Query: 116 STYCLCKDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED*LTVD 295
           + Y L  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED + ++
Sbjct: 236 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 295

Query: 296 SSA 304
            S+
Sbjct: 296 QSS 298


>gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/63 (80%), Positives = 56/63 (88%)
 Frame = +2

Query: 116 STYCLCKDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED*LTVD 295
           + Y L  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED + ++
Sbjct: 236 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 295

Query: 296 SSA 304
            S+
Sbjct: 296 QSS 298


>emb|CAD88979.1| DNA-directed RNA polymerase subunit B [Cornus kousa]
          Length = 317

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/63 (80%), Positives = 56/63 (88%)
 Frame = +2

Query: 116 STYCLCKDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED*LTVD 295
           + Y L  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED + ++
Sbjct: 11  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 70

Query: 296 SSA 304
            S+
Sbjct: 71  QSS 73


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/63 (80%), Positives = 56/63 (88%)
 Frame = +2

Query: 116 STYCLCKDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED*LTVD 295
           + Y L  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED + ++
Sbjct: 232 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 291

Query: 296 SSA 304
            S+
Sbjct: 292 QSS 294