BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003408
         (2047 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [...   326   2e-86
ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ...   321   4e-85
ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ...   318   3e-84
ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|1...   318   3e-84
gb|AFK39498.1| unknown [Medicago truncatula]                          317   8e-84

>ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
           gi|147867252|emb|CAN81194.1| hypothetical protein
           VITISV_022853 [Vitis vinifera]
           gi|297745390|emb|CBI40470.3| unnamed protein product
           [Vitis vinifera]
          Length = 241

 Score =  326 bits (835), Expect = 2e-86
 Identities = 162/182 (89%), Positives = 175/182 (96%)
 Frame = -2

Query: 564 SXXMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQID 385
           S  +SD+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THLMPRSQID
Sbjct: 59  SQQISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118

Query: 384 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSAGG 205
           IFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDLNY+EDSAGG
Sbjct: 119 IFVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGG 178

Query: 204 PDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLEFR 25
           PDVTVG+L KL+KVTLLQMDAKLPM+ FE VMQLA+EGCKA+ANYIREVLLENTKQLE+R
Sbjct: 179 PDVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLEYR 238

Query: 24  CG 19
            G
Sbjct: 239 RG 240


>ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
           gi|223529966|gb|EEF31893.1| Exosome complex exonuclease
           RRP41, putative [Ricinus communis]
          Length = 241

 Score =  321 bits (823), Expect = 4e-85
 Identities = 158/183 (86%), Positives = 175/183 (95%)
 Frame = -2

Query: 564 SXXMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQID 385
           S  + D+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQID
Sbjct: 59  SQQIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQID 118

Query: 384 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSAGG 205
           I+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDLNY+EDSAGG
Sbjct: 119 IYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGG 178

Query: 204 PDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLEFR 25
           PDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+EGCKA+ANYIRE+LLENTKQLE+R
Sbjct: 179 PDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLEYR 238

Query: 24  CGV 16
            G+
Sbjct: 239 RGL 241


>ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
           gi|355501548|gb|AES82751.1| Exosome complex exonuclease
           RRP41 [Medicago truncatula]
          Length = 241

 Score =  318 bits (815), Expect = 3e-84
 Identities = 158/182 (86%), Positives = 171/182 (93%)
 Frame = -2

Query: 564 SXXMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQID 385
           S  MSDKALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQID
Sbjct: 59  SQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQID 118

Query: 384 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSAGG 205
           I+VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAG+LNSTPLLDLNY+EDSAGG
Sbjct: 119 IYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGG 178

Query: 204 PDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLEFR 25
           PDVTVG+L KL+KVTLLQMD+KLP++  E VMQLA EGCKA+ANYIRE+LLENTKQLE+R
Sbjct: 179 PDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLENTKQLEYR 238

Query: 24  CG 19
            G
Sbjct: 239 RG 240


>ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|222861618|gb|EEE99160.1| predicted protein [Populus
           trichocarpa]
          Length = 241

 Score =  318 bits (815), Expect = 3e-84
 Identities = 158/183 (86%), Positives = 174/183 (95%)
 Frame = -2

Query: 564 SXXMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQID 385
           S  ++D+ALVRCEYSMANFSTGDR RKPKGDRRS EISLVIRQ ME CI+T+LMPRSQID
Sbjct: 59  SQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQID 118

Query: 384 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSAGG 205
           I+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGFLNSTPLLDLNY+EDSAGG
Sbjct: 119 IYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGG 178

Query: 204 PDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLEFR 25
           PDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+EGCKA+ANYIREVLLENTKQLE+R
Sbjct: 179 PDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREVLLENTKQLEYR 238

Query: 24  CGV 16
            G+
Sbjct: 239 RGL 241


>gb|AFK39498.1| unknown [Medicago truncatula]
          Length = 180

 Score =  317 bits (812), Expect = 8e-84
 Identities = 157/179 (87%), Positives = 170/179 (94%)
 Frame = -2

Query: 555 MSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQIDIFV 376
           MSDKALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQIDI+V
Sbjct: 1   MSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYV 60

Query: 375 QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSAGGPDV 196
           QVLQADGGTRSACINAATLALADAGIPM D+VTSCSAG+LNSTPLLDLNY+EDSAGGPDV
Sbjct: 61  QVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 120

Query: 195 TVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLEFRCG 19
           TVG+L KL+KVTLLQMD+KLP++  E VMQLA EGCKA+ANYIRE+LLENTKQLE+R G
Sbjct: 121 TVGILLKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLENTKQLEYRRG 179