BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003359
         (1145 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...   515   e-144
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...   494   e-137
emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]   489   e-136
ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...   483   e-134
ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containi...   464   e-128

>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
            predicted protein [Populus trichocarpa]
          Length = 476

 Score =  515 bits (1327), Expect = e-144
 Identities = 248/374 (66%), Positives = 312/374 (83%)
 Frame = -1

Query: 1139 STRVVDSLVRAFGTGIIRKRDVYALWDLVKEIGENDVGVLSTGILNEVISLFWKLGKGKA 960
            +TR +D LV +  +  +R+++ YALWDLV+EIGE + G++S G LN++I+L  KLGKGKA
Sbjct: 93   TTRAIDVLVSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGKGKA 152

Query: 959  ALEVLNKFEDFVCEPNVDSYYLTIEALCRRSIYDWAWPVCEKMLNAGDLPDSKKIGSIIS 780
            ALEV +K +DF C P+ ++YY TIEALCRRS YDWAW VCEKML+ G LPDS+KIG II 
Sbjct: 153  ALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGPLPDSEKIGKIIC 212

Query: 779  SFCKGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGDARK 600
             FCKG+KAKDAH VYL+AKEK+K PP+  + FLI SLC++  TV LALE+LNDF G+A+K
Sbjct: 213  WFCKGSKAKDAHKVYLLAKEKSKCPPKPALYFLIGSLCRDDGTVNLALEMLNDFEGEAKK 272

Query: 599  YAMKPFSCVIRGLCRIKDIEEAKKVLSMMIDEGPPPGSAVFNSIINGLSKAGDLDEAMGL 420
            YA+KPFS VIRGLCRIKD++ AK++LS MI EGPPPG+AVFN++I+G  K GD+ EA+ +
Sbjct: 273  YAIKPFSSVIRGLCRIKDLDGAKQLLSKMIVEGPPPGNAVFNTVISGYCKGGDMKEAIEI 332

Query: 419  LKVMETRGLRPDVYTYSVLMSGYVKGGQMDEARSLLSEAKKKHEKLCPVTFHILTRGYCK 240
            +K+ME+RGL+PDVYTY+V++SGY  GGQM+EA  +LSEAKKKH KL PVT+H L RGYCK
Sbjct: 333  MKLMESRGLKPDVYTYTVIISGYSNGGQMEEACYILSEAKKKHSKLSPVTYHALIRGYCK 392

Query: 239  LEEFDKAVELLNEMKDYGVYPNADEYNKMIQSLCNKALDWRTAEKLFEDMKEKGLYLNGI 60
            L++FDKA+ELL EM+ +GV PNADEYNK+IQSLC K+LDW TAEKLF +MKEKGLYLN I
Sbjct: 393  LDQFDKALELLAEMEKFGVQPNADEYNKLIQSLCLKSLDWGTAEKLFAEMKEKGLYLNSI 452

Query: 59   TQSLIRAVKELEEE 18
            T+SLI AVKELE+E
Sbjct: 453  TRSLITAVKELEQE 466


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  494 bits (1273), Expect = e-137
 Identities = 248/376 (65%), Positives = 304/376 (80%)
 Frame = -1

Query: 1139 STRVVDSLVRAFGTGIIRKRDVYALWDLVKEIGENDVGVLSTGILNEVISLFWKLGKGKA 960
            +TR+V  LVRA  + + RK+D YALWDLVK+IGE +  VL+  +LN++I+LF KLGKGKA
Sbjct: 202  TTRLVHPLVRAICSEL-RKKDAYALWDLVKDIGEEENTVLNVDLLNQLIALFSKLGKGKA 260

Query: 959  ALEVLNKFEDFVCEPNVDSYYLTIEALCRRSIYDWAWPVCEKMLNAGDLPDSKKIGSIIS 780
            A EV NKF DF C P+ ++Y+ TIEALCRRSI+DWA  V EKML A  LPD++KIG II 
Sbjct: 261  AFEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSVREKMLRAEALPDTEKIGKIIC 320

Query: 779  SFCKGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGDARK 600
             FCKG+KA DA+LVYL+AKEKNK PPQ  VNFLI  LC++ +TVKLALE+L+ FSG  RK
Sbjct: 321  WFCKGDKANDAYLVYLLAKEKNKYPPQPSVNFLIGLLCQKNETVKLALEMLDAFSGPKRK 380

Query: 599  YAMKPFSCVIRGLCRIKDIEEAKKVLSMMIDEGPPPGSAVFNSIINGLSKAGDLDEAMGL 420
            YA+KPFS VIR LCRIKD++ AK +LS M+DEGPPPG+AVFNSIING SK GD+ EA+ +
Sbjct: 381  YAIKPFSSVIRALCRIKDLDGAKMLLSKMVDEGPPPGNAVFNSIINGYSKCGDMKEAIKM 440

Query: 419  LKVMETRGLRPDVYTYSVLMSGYVKGGQMDEARSLLSEAKKKHEKLCPVTFHILTRGYCK 240
             ++M  RGL+PD++TY+V+MSGY  GGQM+EA  +LSEAKKKH KL PV +H + RGYCK
Sbjct: 441  KQLMVRRGLKPDLFTYAVIMSGYASGGQMEEACKVLSEAKKKHSKLSPVMYHTVIRGYCK 500

Query: 239  LEEFDKAVELLNEMKDYGVYPNADEYNKMIQSLCNKALDWRTAEKLFEDMKEKGLYLNGI 60
            LE+FDKA++LL EMK +GV  NADEYNK+IQSLC KALDW  AEKL E MKE GL+LNGI
Sbjct: 501  LEQFDKALDLLAEMKTFGVQANADEYNKLIQSLCLKALDWERAEKLLEKMKEDGLHLNGI 560

Query: 59   TQSLIRAVKELEEEDV 12
            T+ LIRAVKELE+E +
Sbjct: 561  TRGLIRAVKELEDEGI 576


>emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
          Length = 549

 Score =  489 bits (1259), Expect = e-136
 Identities = 242/374 (64%), Positives = 299/374 (79%)
 Frame = -1

Query: 1139 STRVVDSLVRAFGTGIIRKRDVYALWDLVKEIGENDVGVLSTGILNEVISLFWKLGKGKA 960
            +TR VD+LVRA    + R++D Y+LWDLVKEIGE + GVL+ GILNE+I+ F KLGKGKA
Sbjct: 183  TTRAVDALVRAVCQSV-RRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKA 241

Query: 959  ALEVLNKFEDFVCEPNVDSYYLTIEALCRRSIYDWAWPVCEKMLNAGDLPDSKKIGSIIS 780
             LEV N F ++                  RSI+DWA  VCEKMLNA  LPDS+K+ +IIS
Sbjct: 242  GLEVFNAFGEY-----------------GRSIFDWALSVCEKMLNASSLPDSEKVWNIIS 284

Query: 779  SFCKGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGDARK 600
             FCKG K KDA+LVYL+AKEKNK PP+T VNFLI SLC+E  T+ +A+E+L+DFSG+  K
Sbjct: 285  WFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEMLDDFSGEECK 344

Query: 599  YAMKPFSCVIRGLCRIKDIEEAKKVLSMMIDEGPPPGSAVFNSIINGLSKAGDLDEAMGL 420
            YA+KP++ VIRGLCR KD++ AK++L  MI+ GPPPG+AVFN +INGLSKAG+++EAM +
Sbjct: 345  YAIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAMKM 404

Query: 419  LKVMETRGLRPDVYTYSVLMSGYVKGGQMDEARSLLSEAKKKHEKLCPVTFHILTRGYCK 240
            +K+METRGL+PDVYTYSV+MSGY  GG M+EA  +LSEAK+ H KL PVT+H L RGYCK
Sbjct: 405  MKLMETRGLKPDVYTYSVIMSGYAHGGMMEEACRVLSEAKRNHSKLSPVTYHTLIRGYCK 464

Query: 239  LEEFDKAVELLNEMKDYGVYPNADEYNKMIQSLCNKALDWRTAEKLFEDMKEKGLYLNGI 60
            LE+FDKAVELL EMK++GV PN DEYNK+IQSLC KALDW+TAEKL E+MK+ GL+LNGI
Sbjct: 465  LEQFDKAVELLGEMKEHGVQPNTDEYNKLIQSLCLKALDWQTAEKLLEEMKQNGLHLNGI 524

Query: 59   TQSLIRAVKELEEE 18
            T+ LIRAVKELEEE
Sbjct: 525  TRGLIRAVKELEEE 538


>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
            mitochondrial-like [Cucumis sativus]
            gi|449477884|ref|XP_004155152.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g02650,
            mitochondrial-like [Cucumis sativus]
          Length = 479

 Score =  483 bits (1244), Expect = e-134
 Identities = 235/378 (62%), Positives = 302/378 (79%)
 Frame = -1

Query: 1145 KTSTRVVDSLVRAFGTGIIRKRDVYALWDLVKEIGENDVGVLSTGILNEVISLFWKLGKG 966
            + ST VVD LVR     + R+R  Y+LW+L+KEIG     +L+  ILN++I+ F KLGKG
Sbjct: 94   EVSTPVVDVLVRVVCANL-RQRVAYSLWELIKEIGGKQTSLLNAEILNQLIAFFSKLGKG 152

Query: 965  KAALEVLNKFEDFVCEPNVDSYYLTIEALCRRSIYDWAWPVCEKMLNAGDLPDSKKIGSI 786
            KAALEVLN +E   C PN +SYY T+EALCRRS YD AWPVCEKML++G +P+S ++G I
Sbjct: 153  KAALEVLNSYEVLGCVPNAESYYFTVEALCRRSSYDLAWPVCEKMLDSGSMPESNRVGKI 212

Query: 785  ISSFCKGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGDA 606
            IS FCKGNKAK+AH VYL+AKEK+ + PQ  +N LI SLC++ +TVKLALE+LNDFS   
Sbjct: 213  ISLFCKGNKAKNAHSVYLLAKEKHVNLPQCYMNILIHSLCRDDETVKLALEMLNDFSTGE 272

Query: 605  RKYAMKPFSCVIRGLCRIKDIEEAKKVLSMMIDEGPPPGSAVFNSIINGLSKAGDLDEAM 426
            R+ A+KP+  VIR LCRIKD  +AK +L  MI EGPPPG+A FN++I G SKAGDL+EAM
Sbjct: 273  RRRAIKPYMEVIRSLCRIKDTSKAKTLLQKMIAEGPPPGNAAFNAVICGYSKAGDLEEAM 332

Query: 425  GLLKVMETRGLRPDVYTYSVLMSGYVKGGQMDEARSLLSEAKKKHEKLCPVTFHILTRGY 246
             L+K+ME+RGL+PDVY+Y+ ++SGY KGGQM EA  +L EAKKKH KL  +T+H L R +
Sbjct: 333  ELIKLMESRGLKPDVYSYTAVISGYAKGGQMKEAYEVLDEAKKKHAKLSHITYHTLIRNH 392

Query: 245  CKLEEFDKAVELLNEMKDYGVYPNADEYNKMIQSLCNKALDWRTAEKLFEDMKEKGLYLN 66
            CKLEE+D A++LL+EMK++GV PN DEYNK+I+SLC KA+DWRT+E+LFE+MKE GL+LN
Sbjct: 393  CKLEEYDSALKLLSEMKNFGVQPNVDEYNKLIRSLCLKAVDWRTSERLFEEMKENGLHLN 452

Query: 65   GITQSLIRAVKELEEEDV 12
            GIT+ LIRAV+ELEEE++
Sbjct: 453  GITRGLIRAVRELEEEEL 470


>ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
            mitochondrial-like isoform 1 [Glycine max]
            gi|356556346|ref|XP_003546487.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g02650,
            mitochondrial-like isoform 2 [Glycine max]
          Length = 538

 Score =  464 bits (1194), Expect = e-128
 Identities = 225/377 (59%), Positives = 297/377 (78%), Gaps = 1/377 (0%)
 Frame = -1

Query: 1139 STRVVDSLVRAFGTGIIRKRDV-YALWDLVKEIGENDVGVLSTGILNEVISLFWKLGKGK 963
            +T +V+SLV A     +RK++V Y+LWDLVKEIGE + G+L+  ILNE+IS F +LGKGK
Sbjct: 153  TTPMVESLVLAICGNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGK 212

Query: 962  AALEVLNKFEDFVCEPNVDSYYLTIEALCRRSIYDWAWPVCEKMLNAGDLPDSKKIGSII 783
            AALEV NKFE F C P+ D+YY TIEALCRR   DWA  VC+KM++A  LPD +K+G+I+
Sbjct: 213  AALEVFNKFEAFHCVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAIL 272

Query: 782  SSFCKGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGDAR 603
            S  CKG KAK+AH VY++A EK K PP  VV+FL+  LC E +TVK ALE+L D   + R
Sbjct: 273  SWLCKGKKAKEAHGVYVVATEKGKQPPVNVVSFLVVKLCGEDETVKFALEMLEDIPEEKR 332

Query: 602  KYAMKPFSCVIRGLCRIKDIEEAKKVLSMMIDEGPPPGSAVFNSIINGLSKAGDLDEAMG 423
            + A+KPF  V+R LCRIK++++AK+++  MI++GPPPG+AVFN ++   SKAG++ +A+ 
Sbjct: 333  ERAIKPFLAVVRALCRIKEVDKAKELVLKMIEDGPPPGNAVFNFVVTAYSKAGEMGKAVE 392

Query: 422  LLKVMETRGLRPDVYTYSVLMSGYVKGGQMDEARSLLSEAKKKHEKLCPVTFHILTRGYC 243
            ++++ME+RGLRPDVYTY+VL S Y  GG+M+EA+ +L+E KKKH KL PV FH L RGYC
Sbjct: 393  MMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEVKKKHAKLGPVMFHTLIRGYC 452

Query: 242  KLEEFDKAVELLNEMKDYGVYPNADEYNKMIQSLCNKALDWRTAEKLFEDMKEKGLYLNG 63
            KLE+FD+A++LL EMKDYGV+P+ DEY+K+IQSLC KALDW  AEKL E+MKE GL+L G
Sbjct: 453  KLEQFDEALKLLAEMKDYGVHPSVDEYDKLIQSLCLKALDWEMAEKLHEEMKESGLHLKG 512

Query: 62   ITQSLIRAVKELEEEDV 12
            IT+ LIRAVKE+E+E V
Sbjct: 513  ITRGLIRAVKEMEKEVV 529