BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003342
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   181   7e-44
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...   163   2e-38
ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...   158   4e-37
ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34

>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score =  181 bits (458), Expect = 7e-44
 Identities = 91/145 (62%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
 Frame = +1

Query: 7   STRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGEAA 186
           +TR V +LVRA    +R+KD Y+LWDLV EIGE + GVL+  ILNE+++ F KLG+G+A 
Sbjct: 183 TTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKAG 242

Query: 187 LEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTISS 363
           LEV N F ++ CEPN DSYY TIEALCRRSI+D AL  CE+MLNA  LPDS K+ + IS 
Sbjct: 243 LEVFNAFGEYGCEPNADSYYFTIEALCRRSIFDWALSVCEKMLNASSLPDSEKVWNIISW 302

Query: 364 FCIGNKAKDAHLVYLMAKEKNKCPP 438
           FC G K KDA+LVYL+AKEKNK PP
Sbjct: 303 FCKGRKVKDAYLVYLLAKEKNKYPP 327


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  163 bits (412), Expect = 2e-38
 Identities = 85/145 (58%), Positives = 109/145 (75%), Gaps = 1/145 (0%)
 Frame = +1

Query: 7   STRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGEAA 186
           +TR+V  LVRA  + +RKKD YALWDLV +IGE +  VL+  +LN++++LF KLG+G+AA
Sbjct: 202 TTRLVHPLVRAICSELRKKDAYALWDLVKDIGEEENTVLNVDLLNQLIALFSKLGKGKAA 261

Query: 187 LEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTISS 363
            EV NKF DF C P+ ++Y+ TIEALCRRSI+D A    E+ML A  LPD+ KIG  I  
Sbjct: 262 FEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSVREKMLRAEALPDTEKIGKIICW 321

Query: 364 FCIGNKAKDAHLVYLMAKEKNKCPP 438
           FC G+KA DA+LVYL+AKEKNK PP
Sbjct: 322 FCKGDKANDAYLVYLLAKEKNKYPP 346


>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  158 bits (400), Expect = 4e-37
 Identities = 82/146 (56%), Positives = 108/146 (73%), Gaps = 2/146 (1%)
 Frame = +1

Query: 7   STRVVGSLVRAFRTC-IRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGEA 183
           +TR +  LV +  +  +R+K+ YALWDLV EIGE + G++S   LN++++L  KLG+G+A
Sbjct: 93  TTRAIDVLVSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGKGKA 152

Query: 184 ALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTIS 360
           ALEV +K +DF C P+ ++YY TIEALCRRS YD A   CE+ML+   LPDS KIG  I 
Sbjct: 153 ALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGPLPDSEKIGKIIC 212

Query: 361 SFCIGNKAKDAHLVYLMAKEKNKCPP 438
            FC G+KAKDAH VYL+AKEK+KCPP
Sbjct: 213 WFCKGSKAKDAHKVYLLAKEKSKCPP 238


>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
           gi|449477884|ref|XP_004155152.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
          Length = 479

 Score =  152 bits (385), Expect = 2e-35
 Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
 Frame = +1

Query: 1   KTSTRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGE 180
           + ST VV  LVR     +R++  Y+LW+L+ EIG     +L+  ILN++++ F KLG+G+
Sbjct: 94  EVSTPVVDVLVRVVCANLRQRVAYSLWELIKEIGGKQTSLLNAEILNQLIAFFSKLGKGK 153

Query: 181 AALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTI 357
           AALEVLN +E   C PN +SYY T+EALCRRS YD A P CE+ML++  +P+S ++G  I
Sbjct: 154 AALEVLNSYEVLGCVPNAESYYFTVEALCRRSSYDLAWPVCEKMLDSGSMPESNRVGKII 213

Query: 358 SSFCIGNKAKDAHLVYLMAKEKN 426
           S FC GNKAK+AH VYL+AKEK+
Sbjct: 214 SLFCKGNKAKNAHSVYLLAKEKH 236


>ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356556346|ref|XP_003546487.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 538

 Score =  150 bits (379), Expect = 1e-34
 Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 3/147 (2%)
 Frame = +1

Query: 7   STRVVGSLVRAF-RTCIRKKDV-YALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGE 180
           +T +V SLV A     +RKK+V Y+LWDLV EIGE + G+L+ +ILNE++S F +LG+G+
Sbjct: 153 TTPMVESLVLAICGNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGK 212

Query: 181 AALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPD-SKIGSTI 357
           AALEV NKFE F C P+ D+YY TIEALCRR   D A   C++M++A+ LPD  K+G+ +
Sbjct: 213 AALEVFNKFEAFHCVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAIL 272

Query: 358 SSFCIGNKAKDAHLVYLMAKEKNKCPP 438
           S  C G KAK+AH VY++A EK K PP
Sbjct: 273 SWLCKGKKAKEAHGVYVVATEKGKQPP 299