BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003324
         (3199 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   528   e-147
emb|CBI36964.3| unnamed protein product [Vitis vinifera]              491   e-136
ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containi...   481   e-133
ref|XP_002301516.1| predicted protein [Populus trichocarpa] gi|2...   471   e-130
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   468   e-129

>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  528 bits (1359), Expect = e-147
 Identities = 272/487 (55%), Positives = 360/487 (73%), Gaps = 10/487 (2%)
 Frame = -2

Query: 1554 SGAARGRRMCTLAIQETKP---------RNETNLPLYRRLSALGITGESVSKTMNEYVRE 1402
            +GA   RR+CT A   T+P         R+     LY RLSALG TG SV+ T+NE+++E
Sbjct: 12   AGAGLARRLCTAAAA-TEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKE 70

Query: 1401 GKTVRKNEIESCVKQLRKFKRYHHALELMEWMETRGNNLSYSDYAVRLDLLSKTKGLNKA 1222
            GK + K+E+ SC+KQLRK++++ HALE+M+WME R    SY+DYAVRLDLLSKTKGL  A
Sbjct: 71   GKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATA 130

Query: 1221 VEYFDNLPDLAKNHLTYGALLNCYCKNENTEKALDLFDKMSEKNIAST-LAFNNLMTLHM 1045
             EYF+NL   AKN LTYG LLNCYCK +  EKAL LF+KM E N AST L FNNLM+LHM
Sbjct: 131  EEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHM 190

Query: 1044 KLGEPEKVPLLLLEMKEKSISPDTFTYNIVMASHAATKDIEGVERVLKEMETKDSERCDW 865
            +LG+PE VP L+ EMK++SISPDTFTYNI+M S+A   DIEG ERVL+E++ ++ ++  W
Sbjct: 191  RLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSW 250

Query: 864  STYSNLASIYIKAGIIDKANLALIELEKKMKPSYRTAYHFLISLYASTSNLSEVHRVWSS 685
            +TYSNLA++Y+ A + +KA LAL +LE++M    R AYHFLISLYA  +NLSEV+RVW+S
Sbjct: 251  TTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNS 310

Query: 684  LKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKDWETSCSSYDMRLANTVVSAYLRRDM 505
            LKSA P TNN+SY +MLQ+L+ L+D+DGL  CF++W++SC S+D+RLAN  V A+L  DM
Sbjct: 311  LKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDM 370

Query: 504  VKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQLDSALSCMEACISIVXXXXKNEWKP 325
            +K+A  I  +A+KR  G  Y   ++FM   ++  ++D+AL  MEA  S V     NEW+P
Sbjct: 371  IKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEV---KNNEWQP 427

Query: 324  TPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANKKEPGMRKRL 145
             PERV+AFLK+ E++K+V  AE+FCK+LKN+  LDSNAY LLL T +AA + EP MRKR+
Sbjct: 428  APERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRM 487

Query: 144  EMDCIKV 124
            + D I+V
Sbjct: 488  KEDDIEV 494


>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  491 bits (1263), Expect = e-136
 Identities = 251/451 (55%), Positives = 334/451 (74%), Gaps = 10/451 (2%)
 Frame = -2

Query: 1554 SGAARGRRMCTLAIQETKP---------RNETNLPLYRRLSALGITGESVSKTMNEYVRE 1402
            +GA   RR+CT A   T+P         R+     LY RLSALG TG SV+ T+NE+++E
Sbjct: 51   AGAGLARRLCTAAAA-TEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKE 109

Query: 1401 GKTVRKNEIESCVKQLRKFKRYHHALELMEWMETRGNNLSYSDYAVRLDLLSKTKGLNKA 1222
            GK + K+E+ SC+KQLRK++++ HALE+M+WME R    SY+DYAVRLDLLSKTKGL  A
Sbjct: 110  GKLIAKHELSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATA 169

Query: 1221 VEYFDNLPDLAKNHLTYGALLNCYCKNENTEKALDLFDKMSEKNIAST-LAFNNLMTLHM 1045
             EYF+NL   AKN LTYG LLNCYCK +  EKAL LF+KM E N AST L FNNLM+LHM
Sbjct: 170  EEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHM 229

Query: 1044 KLGEPEKVPLLLLEMKEKSISPDTFTYNIVMASHAATKDIEGVERVLKEMETKDSERCDW 865
            +LG+PE VP L+ EMK++SISPDTFTYNI+M S+A   DIEG ERVL+E++ ++ ++  W
Sbjct: 230  RLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSW 289

Query: 864  STYSNLASIYIKAGIIDKANLALIELEKKMKPSYRTAYHFLISLYASTSNLSEVHRVWSS 685
            +TYSNLA++Y+ A + +KA LAL +LE++M    R AYHFLISLYA  +NLSEV+RVW+S
Sbjct: 290  TTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNS 349

Query: 684  LKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKDWETSCSSYDMRLANTVVSAYLRRDM 505
            LKSA P TNN+SY +MLQ+L+ L+D+DGL  CF++W++SC S+D+RLAN  V A+L  DM
Sbjct: 350  LKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDM 409

Query: 504  VKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQLDSALSCMEACISIVXXXXKNEWKP 325
            +K+A  I  +A+KR  G  Y   ++FM   ++  ++D+AL  MEA  S V     NEW+P
Sbjct: 410  IKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEV---KNNEWQP 466

Query: 324  TPERVMAFLKHCEKQKNVTDAEEFCKMLKNV 232
             PERV+AFLK+ E++K+V  AE+FCK+LKN+
Sbjct: 467  APERVLAFLKYFEEEKDVEGAEKFCKILKNI 497


>ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial-like [Cucumis sativus]
            gi|449518825|ref|XP_004166436.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial-like [Cucumis sativus]
          Length = 474

 Score =  481 bits (1238), Expect = e-133
 Identities = 240/467 (51%), Positives = 334/467 (71%), Gaps = 2/467 (0%)
 Frame = -2

Query: 1476 LYRRLSALGITGESVSKTMNEYVREGKTVRKNEIESCVKQLRKFKRYHHALELMEWMETR 1297
            LY RLSALG TG SV+KT+N+++ EG  V+K E+E C+K+LRK++RYHH L++MEWMETR
Sbjct: 11   LYPRLSALGATGGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQIMEWMETR 70

Query: 1296 GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDLAKNHLTYGALLNCYCKNENTEKALD 1117
              N S++DYA+RLDL+SK  G+  A +YF +LP  AKN  TYGALLNCYCK    EKAL 
Sbjct: 71   KINYSFTDYALRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKEMMEEKALT 130

Query: 1116 LFDKMSEKNIASTLAFNNLMTLHMKLGEPEKVPLLLLEMKEKSISPDTFTYNIVMASHAA 937
            LF KM E  I+++L+FNNLMT++M++  PEKVP L+ EMK++     TFTYN+ M S A+
Sbjct: 131  LFKKMDELKISTSLSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYNVWMNSCAS 190

Query: 936  TKDIEGVERVLKEMETKDSERCDWSTYSNLASIYIKAGIIDKANLALIELEKKMK--PSY 763
              DI  VE +L+EM+ +D  + DW+TYSNLAS Y+KAG  +KA LAL +LE++MK   + 
Sbjct: 191  LNDIGKVEEILEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEEEMKSDKND 250

Query: 762  RTAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFK 583
            R  YH LISLYASTSNLSEV+R+W++LKS   T  N+SYLVMLQ+L KL D++GL + +K
Sbjct: 251  RLVYHCLISLYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDIEGLKRTYK 310

Query: 582  DWETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRTHELFMDFFIRNL 403
            +WE++C ++D+R+ N ++ AYL++DM ++A +I EDA KR  G   R  E+FM +F++  
Sbjct: 311  EWESNCRNFDLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRAREMFMVYFLKLK 370

Query: 402  QLDSALSCMEACISIVXXXXKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCL 223
            Q+DSA S +E+ +S      + EW P+     AFL + E++K+V  AE+F ++LK + CL
Sbjct: 371  QVDSAFSHLESALS---ESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARILKRLKCL 427

Query: 222  DSNAYCLLLSTYIAANKKEPGMRKRLEMDCIKVTXXXXXXXEKVCMQ 82
            D++ Y LLL TY+AA K  P MRKRL+ D I+++         VC Q
Sbjct: 428  DASGYHLLLKTYVAAGKLAPDMRKRLKEDDIEISSELEELLGTVCPQ 474


>ref|XP_002301516.1| predicted protein [Populus trichocarpa] gi|222843242|gb|EEE80789.1|
            predicted protein [Populus trichocarpa]
          Length = 476

 Score =  471 bits (1213), Expect = e-130
 Identities = 245/465 (52%), Positives = 320/465 (68%), Gaps = 14/465 (3%)
 Frame = -2

Query: 1476 LYRRLSALGITGESVSKTMNEYVREGKTVRKNEIESCVKQLRKFKRYHHALELMEWMETR 1297
            +YRRLS LG +G SVSKT+NE + EG    K  + +C+K+LRK+ R+ HA+E+MEWM+ R
Sbjct: 1    MYRRLSELGASGGSVSKTLNELILEGGKTSKINLTTCIKKLRKYGRFDHAIEVMEWMQKR 60

Query: 1296 GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDLAKNHLTYGALLNCYCKNENTEKALD 1117
              N S+ D+AV LDL +KTKG+  A  YFDNLP   +NH+TY  LLNCYCK   +EKAL 
Sbjct: 61   KMNFSHVDHAVYLDLTAKTKGIAAAENYFDNLPPSVQNHVTYSTLLNCYCKELMSEKALT 120

Query: 1116 LFDKMSEKNIAST-LAFNNLMTLHMKLGEPEKVPLLLLEMKEKSISPDTFTYNIVMASHA 940
            LF+KM +  + ST + FNNLMTLHM+LG+PEKV  ++ EMK++ +SP TFTYNI M S+ 
Sbjct: 121  LFEKMDKMKLLSTSMPFNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYG 180

Query: 939  ATKDIEGVERVLKEMETKDSERCDWSTYSNLASIYIKAGIIDKANLALIELE-------- 784
               D EGV+RVL EM+T   E   W+TYSNLA+IY+KAG+ DKA  AL +LE        
Sbjct: 181  CLNDFEGVQRVLDEMKTDGKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGRD 240

Query: 783  -----KKMKPSYRTAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSK 619
                 K+   + R AYHFLISLYA TSNLSEVHRVW+SLKS+  TT N+SYL +LQ+L+K
Sbjct: 241  CDFQKKRRHDADREAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALAK 300

Query: 618  LDDLDGLTKCFKDWETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRT 439
            L D++G+ KCFK+WE+SC SYDM LAN  + A L  DM +EA  I ++A+KR  GL ++ 
Sbjct: 301  LKDVEGILKCFKEWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDEALKRTKGLFFKA 360

Query: 438  HELFMDFFIRNLQLDSALSCMEACISIVXXXXKNEWKPTPERVMAFLKHCEKQKNVTDAE 259
             E+FM FF++N Q D AL  M+A  S        EW+P  + V AFL + E  K+V  AE
Sbjct: 361  REMFMVFFLKNHQPDLALKHMKAAFSEAKEI---EWQPDQKTVSAFLNYFEDGKDVDGAE 417

Query: 258  EFCKMLKNVDCLDSNAYCLLLSTYIAANKKEPGMRKRLEMDCIKV 124
              CK+ K ++ L+SNAY LLL TY AA +  P MR+RLE D I++
Sbjct: 418  RLCKIWKQINRLNSNAYILLLKTYTAAGRLAPEMRQRLEEDNIEI 462


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
            predicted protein [Populus trichocarpa]
          Length = 473

 Score =  468 bits (1204), Expect = e-129
 Identities = 241/464 (51%), Positives = 329/464 (70%), Gaps = 1/464 (0%)
 Frame = -2

Query: 1476 LYRRLSALGITGESVSKTMNEYVREGKTVRKNEIESCVKQLRKFKRYHHALELMEWMETR 1297
            LY+RLS LG +GESVSKT+N++V EG    K ++ +C+++LRK+ R+ +A+E+MEWM+ R
Sbjct: 15   LYKRLSELGASGESVSKTLNDFVLEGGKTNKVDLLACIRELRKYGRFDYAIEVMEWMQKR 74

Query: 1296 GNNLSYSDYAVRLDLLSKTKGLNKAVEYFDNLPDLAKNHLTYGALLNCYCKNENTEKALD 1117
              N+S+   AV LDL++K +G+  A  YFD L    +NH T+GALL+CYC+   +EKAL 
Sbjct: 75   KMNVSH---AVYLDLIAKKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSEKALT 131

Query: 1116 LFDKMSE-KNIASTLAFNNLMTLHMKLGEPEKVPLLLLEMKEKSISPDTFTYNIVMASHA 940
            LF+KM + K + ++L FNNL++LH++L +PEKV  ++ EMK+K +SP TFTYN+ M S+ 
Sbjct: 132  LFEKMDKMKFLLTSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYG 191

Query: 939  ATKDIEGVERVLKEMETKDSERCDWSTYSNLASIYIKAGIIDKANLALIELEKKMKPSYR 760
               D EGVERVL EM+    +   W+TY+NLA+IY+KAG  DKA  AL ++E++++  YR
Sbjct: 192  CLNDFEGVERVLDEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIERDYR 251

Query: 759  TAYHFLISLYASTSNLSEVHRVWSSLKSALPTTNNLSYLVMLQSLSKLDDLDGLTKCFKD 580
             AYHFLI+LYA TSNL EV+RVW+SLKS   TT N+SYL ML +L+KL D++GL KCFK+
Sbjct: 252  EAYHFLITLYAGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKE 311

Query: 579  WETSCSSYDMRLANTVVSAYLRRDMVKEARLICEDAIKRGPGLNYRTHELFMDFFIRNLQ 400
            WE+SC SYDMRLAN  + A L  DM +EA LI +DA+KR  GL +   E+FM FF++N Q
Sbjct: 312  WESSCHSYDMRLANVAIRACLEHDMYEEAALIFDDALKRTEGLFFNAREMFMVFFLKNHQ 371

Query: 399  LDSALSCMEACISIVXXXXKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLD 220
            LD AL  M+A  S V      EW+P P+ V AF  + E +K+V  AE  CK+LK+++ LD
Sbjct: 372  LDLALKHMKAAFSEVKEI---EWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLD 428

Query: 219  SNAYCLLLSTYIAANKKEPGMRKRLEMDCIKVTXXXXXXXEKVC 88
            SNAY LLL TYIAA K  P MR+RLE D I++        E+VC
Sbjct: 429  SNAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINPELENLLERVC 472