BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003309
         (992 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281131.1| PREDICTED: ferredoxin-1 [Vitis vinifera] gi|...   247   4e-63
ref|XP_002329520.1| predicted protein [Populus trichocarpa] gi|2...   245   1e-62
ref|XP_002519835.1| Ferredoxin-2, putative [Ricinus communis] gi...   243   5e-62
ref|NP_174533.1| ferredoxin [Arabidopsis thaliana] gi|12322453|g...   242   1e-61
ref|XP_003550948.1| PREDICTED: ferredoxin-2-like [Glycine max]        239   7e-61

>ref|XP_002281131.1| PREDICTED: ferredoxin-1 [Vitis vinifera]
           gi|297742123|emb|CBI33910.3| unnamed protein product
           [Vitis vinifera]
          Length = 188

 Score =  247 bits (630), Expect = 4e-63
 Identities = 124/162 (76%), Positives = 132/162 (81%), Gaps = 2/162 (1%)
 Frame = -2

Query: 868 NYPTRSR--RWATRAELQTSIGLAADTGSYXXXXXXXXXXXXXVFDRQRGLVHEFLVPED 695
           N+P  S   R  T +ELQT +G+    G Y               DRQRG+VHEF VPED
Sbjct: 30  NFPYNSLKCRRKTTSELQTPVGVTGLAGGYSPSIPTHKVTVH---DRQRGVVHEFFVPED 86

Query: 694 QYILHTAESQNISLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFP 515
           QYILHTAESQNISLPFACRHGCCTSCAVR+KSGQ+RQPEALGISAELKSKGYALLCVGFP
Sbjct: 87  QYILHTAESQNISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKSKGYALLCVGFP 146

Query: 514 SSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 389
           SSD+EVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE
Sbjct: 147 SSDIEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 188


>ref|XP_002329520.1| predicted protein [Populus trichocarpa] gi|222870229|gb|EEF07360.1|
           predicted protein [Populus trichocarpa]
          Length = 190

 Score =  245 bits (626), Expect = 1e-62
 Identities = 123/150 (82%), Positives = 131/150 (87%)
 Frame = -2

Query: 838 TRAELQTSIGLAADTGSYXXXXXXXXXXXXXVFDRQRGLVHEFLVPEDQYILHTAESQNI 659
           T +ELQ+S+G++  TG+              V DRQRG+VHEFLVPEDQYILHTAESQNI
Sbjct: 43  TTSELQSSVGVSDRTGN--SYSPSIPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNI 100

Query: 658 SLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFPSSDLEVETQDED 479
           +LPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFPSSDLEVETQDED
Sbjct: 101 TLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFPSSDLEVETQDED 160

Query: 478 EVYWLQFGRYFARGPIERDDYALELAMGDE 389
           EVYWLQFGRYFARGPIERDDYALELAM DE
Sbjct: 161 EVYWLQFGRYFARGPIERDDYALELAMADE 190


>ref|XP_002519835.1| Ferredoxin-2, putative [Ricinus communis]
           gi|223540881|gb|EEF42439.1| Ferredoxin-2, putative
           [Ricinus communis]
          Length = 186

 Score =  243 bits (620), Expect = 5e-62
 Identities = 123/153 (80%), Positives = 128/153 (83%)
 Frame = -2

Query: 847 RWATRAELQTSIGLAADTGSYXXXXXXXXXXXXXVFDRQRGLVHEFLVPEDQYILHTAES 668
           R  T +ELQT +G+   TG               V DRQRG+ HEFLVPEDQYILHTAES
Sbjct: 37  RLKTTSELQTQVGV---TGRTSNNSPSNPVHKVTVHDRQRGVSHEFLVPEDQYILHTAES 93

Query: 667 QNISLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFPSSDLEVETQ 488
           QNISLPFACRHGCCTSCAVRVKSGQ+RQPEALGISAELKSKGYALLCVGFPSSDLEVETQ
Sbjct: 94  QNISLPFACRHGCCTSCAVRVKSGQIRQPEALGISAELKSKGYALLCVGFPSSDLEVETQ 153

Query: 487 DEDEVYWLQFGRYFARGPIERDDYALELAMGDE 389
           DEDEVYWLQFGRYFARGPIERDDYALELAM DE
Sbjct: 154 DEDEVYWLQFGRYFARGPIERDDYALELAMADE 186


>ref|NP_174533.1| ferredoxin [Arabidopsis thaliana]
           gi|12322453|gb|AAG51248.1|AC055769_7 ferredoxin,
           putative; 13117-10969 [Arabidopsis thaliana]
           gi|19424039|gb|AAL87281.1| putative ferredoxin protein
           [Arabidopsis thaliana] gi|21281217|gb|AAM45127.1|
           putative ferredoxin protein [Arabidopsis thaliana]
           gi|332193380|gb|AEE31501.1| ferredoxin [Arabidopsis
           thaliana]
          Length = 181

 Score =  242 bits (617), Expect = 1e-61
 Identities = 126/172 (73%), Positives = 137/172 (79%)
 Frame = -2

Query: 904 ITKKFFPLSHRINYPTRSRRWATRAELQTSIGLAADTGSYXXXXXXXXXXXXXVFDRQRG 725
           + KK FP++ R  Y T  RR AT A  +  I +   T S              V DRQRG
Sbjct: 13  LQKKNFPINRR--YITNFRRGATTATCEFRIPVEVSTPS-DRGSLVVPSHKVTVHDRQRG 69

Query: 724 LVHEFLVPEDQYILHTAESQNISLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSK 545
           +VHEF VPEDQYILH+AESQNISLPFACRHGCCTSCAVRVKSG+LRQP+ALGISAELKS+
Sbjct: 70  VVHEFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQ 129

Query: 544 GYALLCVGFPSSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 389
           GYALLCVGFP+SDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE
Sbjct: 130 GYALLCVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 181


>ref|XP_003550948.1| PREDICTED: ferredoxin-2-like [Glycine max]
          Length = 179

 Score =  239 bits (610), Expect = 7e-61
 Identities = 116/162 (71%), Positives = 136/162 (83%), Gaps = 2/162 (1%)
 Frame = -2

Query: 868 NYPTRSRRWAT--RAELQTSIGLAADTGSYXXXXXXXXXXXXXVFDRQRGLVHEFLVPED 695
           ++P+ +RR AT  +AEL+T++     TG Y             V DRQRG+VHEF+VPED
Sbjct: 19  SFPSNTRRKATTAQAELETAVARTGGTG-YQSPSVDVPTHKVIVHDRQRGIVHEFVVPED 77

Query: 694 QYILHTAESQNISLPFACRHGCCTSCAVRVKSGQLRQPEALGISAELKSKGYALLCVGFP 515
           QYILHTAE+QNI+LPFACRHGCCTSCAVR+K+G++RQPEALGISAEL+ KGYALLCVGFP
Sbjct: 78  QYILHTAEAQNITLPFACRHGCCTSCAVRIKNGKIRQPEALGISAELRDKGYALLCVGFP 137

Query: 514 SSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 389
           +SD+EVETQDEDEVYWLQFGRYFARGP+ERDDYALELAM DE
Sbjct: 138 TSDVEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMADE 179