BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003246
         (731 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276868.1| PREDICTED: nuclear cap-binding protein subun...   187   1e-45
ref|XP_002863606.1| cap-binding protein 20 [Arabidopsis lyrata s...   186   3e-45
ref|NP_199233.1| nuclear cap-binding protein subunit 2 [Arabidop...   185   7e-45
ref|NP_001242001.1| uncharacterized protein LOC100789535 [Glycin...   185   7e-45
gb|ACN43580.1| nuclear cap-binding protein [Solanum tuberosum]        185   7e-45

>ref|XP_002276868.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 1
           [Vitis vinifera] gi|359485224|ref|XP_003633238.1|
           PREDICTED: nuclear cap-binding protein subunit 2-like
           isoform 2 [Vitis vinifera]
           gi|359485226|ref|XP_003633239.1| PREDICTED: nuclear
           cap-binding protein subunit 2-like isoform 3 [Vitis
           vinifera]
          Length = 253

 Score =  187 bits (476), Expect = 1e-45
 Identities = 88/113 (77%), Positives = 95/113 (84%)
 Frame = +1

Query: 1   IMGLDKNTKTPCGFCFVLYYSREDAEDSVKYISGTILDDRPIRVDFDWGFXXXXXXXXXX 180
           IMGLDKN+KTPCGFCFVLYYSR+DAED+VKYISGT+LDDRPIRVDFDWGF          
Sbjct: 64  IMGLDKNSKTPCGFCFVLYYSRDDAEDAVKYISGTVLDDRPIRVDFDWGFQEGRQWGRGR 123

Query: 181 XXXXVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFQQFVPSHY 339
               VRDEYRTDYDPGRGGYGKLVQ+ELEAQRQLVDYG+GSLGSF   +PS Y
Sbjct: 124 SGGQVRDEYRTDYDPGRGGYGKLVQRELEAQRQLVDYGSGSLGSFPPVMPSQY 176


>ref|XP_002863606.1| cap-binding protein 20 [Arabidopsis lyrata subsp. lyrata]
           gi|297309441|gb|EFH39865.1| cap-binding protein 20
           [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  186 bits (473), Expect = 3e-45
 Identities = 88/113 (77%), Positives = 94/113 (83%)
 Frame = +1

Query: 1   IMGLDKNTKTPCGFCFVLYYSREDAEDSVKYISGTILDDRPIRVDFDWGFXXXXXXXXXX 180
           IMGLDKNTKTPCGFCFVL+YSRED ED+VKYISGTILDDRPIRVDFDWGF          
Sbjct: 64  IMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGR 123

Query: 181 XXXXVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFQQFVPSHY 339
               VRDEYRTDYDP RGGYGKLVQ+ELEAQRQLVDYGTGSLG++ Q  PS+Y
Sbjct: 124 SGGQVRDEYRTDYDPARGGYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPSNY 176


>ref|NP_199233.1| nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]
           gi|145334719|ref|NP_001078705.1| nuclear cap-binding
           protein subunit 2 [Arabidopsis thaliana]
           gi|75338554|sp|Q9XFD1.1|NCBP2_ARATH RecName:
           Full=Nuclear cap-binding protein subunit 2; AltName:
           Full=20 kDa nuclear cap-binding protein; AltName:
           Full=NCBP 20 kDa subunit; Short=AtCBP20
           gi|4768968|gb|AAD29697.1|AF140219_1 nuclear cap-binding
           protein [Arabidopsis thaliana]
           gi|9759521|dbj|BAB10987.1| nuclear cap-binding protein;
           CBP20 [Arabidopsis thaliana] gi|28466941|gb|AAO44079.1|
           At5g44200 [Arabidopsis thaliana]
           gi|110735694|dbj|BAE99827.1| nuclear cap-binding protein
           [Arabidopsis thaliana] gi|332007690|gb|AED95073.1|
           nuclear cap-binding protein subunit 2 [Arabidopsis
           thaliana] gi|332007691|gb|AED95074.1| nuclear
           cap-binding protein subunit 2 [Arabidopsis thaliana]
          Length = 257

 Score =  185 bits (470), Expect = 7e-45
 Identities = 87/113 (76%), Positives = 94/113 (83%)
 Frame = +1

Query: 1   IMGLDKNTKTPCGFCFVLYYSREDAEDSVKYISGTILDDRPIRVDFDWGFXXXXXXXXXX 180
           IMGLDKNTKTPCGFCFVL+YSRED ED+VKYISGTILDDRPIRVDFDWGF          
Sbjct: 64  IMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGR 123

Query: 181 XXXXVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFQQFVPSHY 339
               VRDEYRTDYDP RGGYGKLVQ+ELEAQRQLVDYGTGSLG++ Q  P++Y
Sbjct: 124 SGGQVRDEYRTDYDPARGGYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPTNY 176


>ref|NP_001242001.1| uncharacterized protein LOC100789535 [Glycine max]
           gi|255647255|gb|ACU24095.1| unknown [Glycine max]
          Length = 235

 Score =  185 bits (470), Expect = 7e-45
 Identities = 88/113 (77%), Positives = 91/113 (80%)
 Frame = +1

Query: 1   IMGLDKNTKTPCGFCFVLYYSREDAEDSVKYISGTILDDRPIRVDFDWGFXXXXXXXXXX 180
           IMGLDKNTKTPCGFCFVLYYSRED ED  KYISGTILDDRPIRVDFDWGF          
Sbjct: 64  IMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWGRGR 123

Query: 181 XXXXVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFQQFVPSHY 339
               VRDEYRTDYDPGRGGYGKLVQ+ELE QRQLVDYGTGSLGSF   +P+ Y
Sbjct: 124 SGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPTSY 176


>gb|ACN43580.1| nuclear cap-binding protein [Solanum tuberosum]
          Length = 255

 Score =  185 bits (470), Expect = 7e-45
 Identities = 87/114 (76%), Positives = 96/114 (84%), Gaps = 1/114 (0%)
 Frame = +1

Query: 1   IMGLDKNTKTPCGFCFVLYYSREDAEDSVKYISGTILDDRPIRVDFDWGFXXXXXXXXXX 180
           +MGLDKN+KTPCGFCF++YYSR+DAEDSVKYISGTILDDRPIRVDFDWGF          
Sbjct: 64  VMGLDKNSKTPCGFCFIMYYSRDDAEDSVKYISGTILDDRPIRVDFDWGFQEGRQWGRGR 123

Query: 181 XXXXVRDEYRTDYDPGRGGYGKLVQQELEAQRQLVDYGTGSLGSFQQFVPS-HY 339
               VRDEYRTDYDPGRGGYGKLVQ+ELEAQRQLVDYGTGSLG++   +PS HY
Sbjct: 124 SGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGAYPPVMPSPHY 177