BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003201
         (1058 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              275   1e-71
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   275   1e-71
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   273   7e-71
ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein c...   271   2e-70
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   268   2e-69

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  275 bits (704), Expect = 1e-71
 Identities = 140/178 (78%), Positives = 152/178 (85%), Gaps = 4/178 (2%)
 Frame = +3

Query: 537  CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 716
            CN++Y ED+YIF PLLFNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 524  CNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 583

Query: 717  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 896
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 584  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 640

Query: 897  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLAARSVWAFGPDKQ 1058
            N      EP EKGLA+DIENG+VSIDW+RK +G+FFQTKYDWDLLAARS+WAFGPDKQ
Sbjct: 641  NKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLAARSIWAFGPDKQ 698



 Score =  102 bits (254), Expect = 2e-19
 Identities = 50/62 (80%), Positives = 55/62 (88%)
 Frame = +2

Query: 233 DHISAASATAGGIEAIHPAAGNVYFASASAGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 412
           +HISAAS+TAG ++ I PAAGNV FASASAGWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301

Query: 413 *G 418
            G
Sbjct: 302 WG 303


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            [Vitis vinifera] gi|147858113|emb|CAN81413.1|
            hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  275 bits (704), Expect = 1e-71
 Identities = 140/178 (78%), Positives = 152/178 (85%), Gaps = 4/178 (2%)
 Frame = +3

Query: 537  CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 716
            CN++Y ED+YIF PLLFNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 581  CNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 640

Query: 717  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 896
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 641  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 697

Query: 897  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLAARSVWAFGPDKQ 1058
            N      EP EKGLA+DIENG+VSIDW+RK +G+FFQTKYDWDLLAARS+WAFGPDKQ
Sbjct: 698  NKITMIAEPLEKGLAEDIENGVVSIDWHRKKLGDFFQTKYDWDLLAARSIWAFGPDKQ 755



 Score =  102 bits (254), Expect = 2e-19
 Identities = 50/62 (80%), Positives = 55/62 (88%)
 Frame = +2

Query: 233 DHISAASATAGGIEAIHPAAGNVYFASASAGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 412
           +HISAAS+TAG ++ I PAAGNV FASASAGWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358

Query: 413 *G 418
            G
Sbjct: 359 WG 360


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
            [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
            small nuclear ribonucleoprotein component, putative
            [Ricinus communis]
          Length = 992

 Score =  273 bits (697), Expect = 7e-71
 Identities = 141/179 (78%), Positives = 151/179 (84%), Gaps = 5/179 (2%)
 Frame = +3

Query: 537  CNVNYG-EDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEES 713
            CNVNY  ED+YIF PL FNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEES
Sbjct: 584  CNVNYSYEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEES 643

Query: 714  GEHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKE 893
            GEHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      +
Sbjct: 644  GEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNK 700

Query: 894  QNHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLAARSVWAFGPDKQ 1058
            +N      EP EKGLA+DIENG+VSIDWNRK +G+FF+TKYDWDLLAARS+WAFGPDKQ
Sbjct: 701  KNKITMIAEPLEKGLAEDIENGVVSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQ 759



 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +2

Query: 233 DHISAASATAGGIEAIHPAAGNVYFASASAGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 412
           +HI+A S+TAG ++ I PAAGNV FASA+AGWSFTL SFAKLY+KLHGIPFDA KFASRL
Sbjct: 302 NHITAGSSTAGSVQVIDPAAGNVCFASANAGWSFTLQSFAKLYLKLHGIPFDADKFASRL 361

Query: 413 *G 418
            G
Sbjct: 362 WG 363


>ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein component [Medicago
            truncatula] gi|355510562|gb|AES91704.1| 116 kDa U5 small
            nuclear ribonucleoprotein component [Medicago truncatula]
          Length = 983

 Score =  271 bits (694), Expect = 2e-70
 Identities = 138/178 (77%), Positives = 150/178 (84%), Gaps = 4/178 (2%)
 Frame = +3

Query: 537  CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 716
            CNV++ ED+YIF PLLFNTL VVK A EPLNPSELPKMVEGLRKISKS PLA+TKVEESG
Sbjct: 581  CNVDFDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESG 640

Query: 717  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 896
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 641  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 697

Query: 897  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLAARSVWAFGPDKQ 1058
            N      EP E+GLA+DIENG+VS DWNRK +GEFFQTKYDWDLLAARS+WAFGPDKQ
Sbjct: 698  NKITMIAEPLERGLAEDIENGVVSTDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQ 755



 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 41/62 (66%), Positives = 50/62 (80%)
 Frame = +2

Query: 233 DHISAASATAGGIEAIHPAAGNVYFASASAGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 412
           +HI+AAS+ AG ++ I P AGNV FAS +AGWSFTL SFAK+Y KLHG+P +A KFASRL
Sbjct: 299 NHIAAASSVAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKMYGKLHGVPLEANKFASRL 358

Query: 413 *G 418
            G
Sbjct: 359 WG 360


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
            gi|30679607|ref|NP_849600.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
            to an U5 snRNP-specific protein 116 kD from Homo sapiens
            gi|4759280 and contains elongation factor G C-terminus
            PF|00679 and is a member of the elongation factor Tu
            family PF|00009 [Arabidopsis thaliana]
            gi|110741512|dbj|BAE98706.1| elongation factor like
            protein [Arabidopsis thaliana]
            gi|332189840|gb|AEE27961.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|332189841|gb|AEE27962.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  268 bits (684), Expect = 2e-69
 Identities = 136/178 (76%), Positives = 149/178 (83%), Gaps = 4/178 (2%)
 Frame = +3

Query: 537  CNVNYGEDIYIFMPLLFNTLPVVKMAAEPLNPSELPKMVEGLRKISKS*PLAITKVEESG 716
            CN +Y ED+YIF  L FNTLPVVK A EPLNPSELPKMVEGLRKISKS PLAITKVEESG
Sbjct: 580  CNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESG 639

Query: 717  EHTILGTGKLYLDCIMKDLRELYSEVEVKVADSVVSFCETVVESSYIHEMFC*NTQQKEQ 896
            EHTILGTG+LYLD IMKDLRELYSEVEVKVAD VVSFCETVVESS    M C      ++
Sbjct: 640  EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKK 696

Query: 897  NHY----EPFEKGLAQDIENGIVSIDWNRKTIGEFFQTKYDWDLLAARSVWAFGPDKQ 1058
            N      EP ++GLA+DIENG+VSIDWNRK +G+FF+TKYDWDLLAARS+WAFGPDKQ
Sbjct: 697  NKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQ 754



 Score = 88.2 bits (217), Expect = 3e-15
 Identities = 43/62 (69%), Positives = 48/62 (77%)
 Frame = +2

Query: 233 DHISAASATAGGIEAIHPAAGNVYFASASAGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 412
           +HISAAS TAG +  I PAAGNV FAS +AGWSFTL SFAK+Y KLHG+  D  KFASRL
Sbjct: 298 NHISAASTTAGDLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRL 357

Query: 413 *G 418
            G
Sbjct: 358 WG 359