BLASTX nr result
ID: Coptis25_contig00003159
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003159
(975 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32873.3| unnamed protein product [Vitis vinifera] 147 2e-69
ref|XP_002278827.1| PREDICTED: zinc finger and SCAN domain-conta... 147 2e-69
ref|NP_001234471.1| transcription factor IIIA [Solanum lycopersi... 145 1e-61
ref|XP_002327353.1| predicted protein [Populus trichocarpa] gi|2... 148 1e-61
ref|XP_003634122.1| PREDICTED: LOW QUALITY PROTEIN: transcriptio... 130 6e-60
>emb|CBI32873.3| unnamed protein product [Vitis vinifera]
Length = 390
Score = 147 bits (372), Expect(2) = 2e-69
Identities = 68/99 (68%), Positives = 76/99 (76%)
Frame = -3
Query: 535 KAVHLELCPYTCRFTGCGKKFPFKHVRDNHEKTREHVYTQGDFEEADEQFRSRPRGGRKR 356
KAVHL+L P+ C GCG +FPFKHVRDNHEKT HVYT GDFEE DEQFR RP+GGRKR
Sbjct: 290 KAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEKTGCHVYTHGDFEELDEQFRLRPKGGRKR 349
Query: 355 KCPTVETLLRKRVKPPGQEDSAWSHGSEYLAWLLSAADE 239
K P +E LLRKRV PP Q DS G EYL+WLLS A++
Sbjct: 350 KSPPIEALLRKRVTPPSQSDSILCQGPEYLSWLLSDAED 388
Score = 142 bits (357), Expect(2) = 2e-69
Identities = 64/106 (60%), Positives = 83/106 (78%)
Frame = -1
Query: 975 EAESTSCDIGCPKQYVCQEVGCGKAFRHPSRLKKHEETHDKLDSVEAICSELGCMKSFSN 796
+ ES D+G KQYVC E+GCGK F+ S+L+KHE++H KLDSVEA+C E C+K F+N
Sbjct: 165 DEESPPNDVGS-KQYVCPELGCGKVFKFASKLQKHEDSHAKLDSVEAVCLEPECLKHFTN 223
Query: 795 VDCLKAHLQSCHRHFQCEVCGTQQLRKNIKRHMRTHEAGRTLEQFK 658
CLKAHLQSCH+H CE+CGT+QL+KNIKRH+RTHE+ + E+ K
Sbjct: 224 EQCLKAHLQSCHQHIICEICGTKQLKKNIKRHLRTHESVCSSERVK 269
>ref|XP_002278827.1| PREDICTED: zinc finger and SCAN domain-containing protein 10-like
[Vitis vinifera]
Length = 370
Score = 147 bits (372), Expect(2) = 2e-69
Identities = 68/99 (68%), Positives = 76/99 (76%)
Frame = -3
Query: 535 KAVHLELCPYTCRFTGCGKKFPFKHVRDNHEKTREHVYTQGDFEEADEQFRSRPRGGRKR 356
KAVHL+L P+ C GCG +FPFKHVRDNHEKT HVYT GDFEE DEQFR RP+GGRKR
Sbjct: 270 KAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEKTGCHVYTHGDFEELDEQFRLRPKGGRKR 329
Query: 355 KCPTVETLLRKRVKPPGQEDSAWSHGSEYLAWLLSAADE 239
K P +E LLRKRV PP Q DS G EYL+WLLS A++
Sbjct: 330 KSPPIEALLRKRVTPPSQSDSILCQGPEYLSWLLSDAED 368
Score = 142 bits (357), Expect(2) = 2e-69
Identities = 64/106 (60%), Positives = 83/106 (78%)
Frame = -1
Query: 975 EAESTSCDIGCPKQYVCQEVGCGKAFRHPSRLKKHEETHDKLDSVEAICSELGCMKSFSN 796
+ ES D+G KQYVC E+GCGK F+ S+L+KHE++H KLDSVEA+C E C+K F+N
Sbjct: 145 DEESPPNDVGS-KQYVCPELGCGKVFKFASKLQKHEDSHAKLDSVEAVCLEPECLKHFTN 203
Query: 795 VDCLKAHLQSCHRHFQCEVCGTQQLRKNIKRHMRTHEAGRTLEQFK 658
CLKAHLQSCH+H CE+CGT+QL+KNIKRH+RTHE+ + E+ K
Sbjct: 204 EQCLKAHLQSCHQHIICEICGTKQLKKNIKRHLRTHESVCSSERVK 249
>ref|NP_001234471.1| transcription factor IIIA [Solanum lycopersicum]
gi|115279797|gb|ABI85391.1| transcription factor IIIA
[Solanum lycopersicum] gi|115279800|gb|ABI85393.1|
transcription factor IIIA [Solanum lycopersicum]
Length = 372
Score = 145 bits (366), Expect(2) = 1e-61
Identities = 59/104 (56%), Positives = 81/104 (77%)
Frame = -1
Query: 969 ESTSCDIGCPKQYVCQEVGCGKAFRHPSRLKKHEETHDKLDSVEAICSELGCMKSFSNVD 790
+ S ++ PK+YVC E GCGK F++ S+L+KHE++H KL++VEA+C E GCMK F+N
Sbjct: 147 QPASAEVDLPKEYVCSEAGCGKVFKYASKLRKHEDSHVKLETVEAMCLEPGCMKHFTNEK 206
Query: 789 CLKAHLQSCHRHFQCEVCGTQQLRKNIKRHMRTHEAGRTLEQFK 658
CLK H++SCH+H CE+CGT+QL+KNIKRH+RTHE G E+ K
Sbjct: 207 CLKEHIESCHQHIDCEICGTKQLKKNIKRHLRTHEEGPISERIK 250
Score = 118 bits (296), Expect(2) = 1e-61
Identities = 54/95 (56%), Positives = 68/95 (71%)
Frame = -3
Query: 535 KAVHLELCPYTCRFTGCGKKFPFKHVRDNHEKTREHVYTQGDFEEADEQFRSRPRGGRKR 356
KAVH+ P++C +GCG KF FKHVRD HE++ HVYT GDFEE DEQF SRPRGGRKR
Sbjct: 271 KAVHVGSKPFSCSISGCGMKFAFKHVRDKHEQSGCHVYTPGDFEEVDEQFLSRPRGGRKR 330
Query: 355 KCPTVETLLRKRVKPPGQEDSAWSHGSEYLAWLLS 251
+ E+++RKR+ PP D ++ EYL+WL S
Sbjct: 331 EPTLFESIMRKRITPPSGIDPVFNQTPEYLSWLRS 365
>ref|XP_002327353.1| predicted protein [Populus trichocarpa] gi|222835723|gb|EEE74158.1|
predicted protein [Populus trichocarpa]
Length = 335
Score = 148 bits (373), Expect(2) = 1e-61
Identities = 66/107 (61%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Frame = -1
Query: 975 EAESTSCDIGCPKQYVCQEVGCGKAFRHPSRLKKHEETHDKLDSVEAICSELGCMKSFSN 796
+ S SC G KQYVCQE GCGKAFR+PS+L+KHE++H LD VEA+C E GCMK FSN
Sbjct: 133 DESSPSCSFGGEKQYVCQEPGCGKAFRYPSKLRKHEDSHVSLDHVEAMCLEPGCMKHFSN 192
Query: 795 VDCLKAHLQSCHRHFQCEVCGTQQLRKNIKRHMRTHE-AGRTLEQFK 658
+CLKAH+QS H++ C++CGT+QL+KNIKRH+RTHE A + E+ K
Sbjct: 193 KECLKAHIQSSHQYINCDICGTKQLKKNIKRHLRTHEPASDSTERIK 239
Score = 115 bits (289), Expect(2) = 1e-61
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = -3
Query: 535 KAVHLELCPYTCRFTGCGKKFPFKHVRDNHEKTREHVYTQGDFEEADEQFRSRPRGGRKR 356
KAVHLE P+ C F GC +F +KHVRDNHEK+ HVYT GDF E+D QFRS+PRGGRKR
Sbjct: 260 KAVHLEHRPFLCGFPGCDMRFSYKHVRDNHEKSGLHVYTPGDFVESDRQFRSKPRGGRKR 319
Query: 355 KCPTVETLLRKRVKPP 308
K PTVE L+RKRV PP
Sbjct: 320 KFPTVEMLIRKRVTPP 335
>ref|XP_003634122.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIA-like
[Vitis vinifera]
Length = 314
Score = 130 bits (326), Expect(2) = 6e-60
Identities = 56/95 (58%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = -1
Query: 939 KQYVCQEVGCGKAFRHPSRLKKHEETHDK-LDSVEAICSELGCMKSFSNVDCLKAHLQSC 763
KQYVC E+GCGK F+ S+L+ HE++H K L + EA+CSE GC K F+N CLKAHL+SC
Sbjct: 102 KQYVCSEIGCGKVFKFASKLQTHEDSHGKFLLTFEAVCSEPGCFKHFTNEQCLKAHLESC 161
Query: 762 HRHFQCEVCGTQQLRKNIKRHMRTHEAGRTLEQFK 658
H+H CE CGT QLRKNIKRH++TH++G + E+ +
Sbjct: 162 HQHIICETCGTNQLRKNIKRHLKTHKSGCSSERIR 196
Score = 128 bits (321), Expect(2) = 6e-60
Identities = 64/99 (64%), Positives = 70/99 (70%)
Frame = -3
Query: 535 KAVHLELCPYTCRFTGCGKKFPFKHVRDNHEKTREHVYTQGDFEEADEQFRSRPRGGRKR 356
KAVHL+L P+ C GC + RDNHEKTR HVYT GDFEE DEQFR RPRGGRKR
Sbjct: 218 KAVHLQLRPFVCGIPGCCMRX-----RDNHEKTRCHVYTHGDFEELDEQFRQRPRGGRKR 272
Query: 355 KCPTVETLLRKRVKPPGQEDSAWSHGSEYLAWLLSAADE 239
P VE +LRKRV PP Q DS S GSE+L+WLLSA E
Sbjct: 273 TSPPVEAVLRKRVTPPSQSDSISSQGSEFLSWLLSAGAE 311