BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003136
         (1220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15366.3| unnamed protein product [Vitis vinifera]              592   e-167
ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containi...   592   e-167
ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containi...   539   e-151
ref|XP_002322051.1| predicted protein [Populus trichocarpa] gi|2...   536   e-150
ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago t...   529   e-148

>emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  592 bits (1525), Expect = e-167
 Identities = 276/402 (68%), Positives = 338/402 (84%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            MIAG+SQNG PD+AI+LFR+M    +QP EIA++ V  AC+QL+ALRLGKE+HCFALKA 
Sbjct: 382  MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 441

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
            LTED FVSSSIIDMYAK GCI  S R+F RLREKD+ SW V+IAGYG+HGRGK+A+ELFE
Sbjct: 442  LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 501

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
            +M   GLKPD FTF  +LMACSH+GLV +GL+YF++M   + IEPKLEHY C+VDMLGRA
Sbjct: 502  KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 561

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDLEPYKAENYVLVS 721
            G ++ AL L+EEMP  PD+ IW +LLSSC+ HG++ LG+KV+  LL+LEP K ENYVL+S
Sbjct: 562  GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 621

Query: 722  NLFAKAGRWEDVRRVRGRMKEMGLKKDIGCSWIEVEGKIYNFIVGDKTLPDSEEIRQMWQ 901
            NLFA +G+W+DVRRVRGRMK++GL+KD GCSWIEV GK++NF++GD+ LP+ EE+R+ W+
Sbjct: 622  NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWR 681

Query: 902  ELEHKIGEIGYVPDTGSVLHDLDEQEKADILRGHSEKLAIAFGLLKTTKGMTVRICKNLR 1081
             LE KI  IGY PDTGSVLHDL+E++K  ILRGHSEKLAI+FGLL T KG+ VR+ KNLR
Sbjct: 682  RLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLR 741

Query: 1082 MCADCHNAAKLVSKVVHRDIIVRDNKRFHHFSAGICSCGDYW 1207
            +C DCHNAAK +SKVV+RDI+VRDNKRFHHF  GICSCGDYW
Sbjct: 742  ICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCV-RLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +++ +++N   + A+ +F  +  V   +P    +  V+ ACA L  L LG+ IH  A K 
Sbjct: 178 IVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKM 237

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSW-RVFGRLREKDMVSWTVMIAGYGVHGRGKDAIEL 355
           +L  D FV +++I MY K G +E++  RVF  +  K + SW  ++ GY  +   + A++L
Sbjct: 238 DLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDL 297

Query: 356 FERMQSEGLKPDAFTFISLLMACS 427
           + +M   GL PD FT  SLL+ACS
Sbjct: 298 YLQMTDSGLDPDWFTIGSLLLACS 321


>ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like
            [Vitis vinifera]
          Length = 881

 Score =  592 bits (1525), Expect = e-167
 Identities = 276/402 (68%), Positives = 338/402 (84%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            MIAG+SQNG PD+AI+LFR+M    +QP EIA++ V  AC+QL+ALRLGKE+HCFALKA 
Sbjct: 480  MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
            LTED FVSSSIIDMYAK GCI  S R+F RLREKD+ SW V+IAGYG+HGRGK+A+ELFE
Sbjct: 540  LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
            +M   GLKPD FTF  +LMACSH+GLV +GL+YF++M   + IEPKLEHY C+VDMLGRA
Sbjct: 600  KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 659

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDLEPYKAENYVLVS 721
            G ++ AL L+EEMP  PD+ IW +LLSSC+ HG++ LG+KV+  LL+LEP K ENYVL+S
Sbjct: 660  GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 719

Query: 722  NLFAKAGRWEDVRRVRGRMKEMGLKKDIGCSWIEVEGKIYNFIVGDKTLPDSEEIRQMWQ 901
            NLFA +G+W+DVRRVRGRMK++GL+KD GCSWIEV GK++NF++GD+ LP+ EE+R+ W+
Sbjct: 720  NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWR 779

Query: 902  ELEHKIGEIGYVPDTGSVLHDLDEQEKADILRGHSEKLAIAFGLLKTTKGMTVRICKNLR 1081
             LE KI  IGY PDTGSVLHDL+E++K  ILRGHSEKLAI+FGLL T KG+ VR+ KNLR
Sbjct: 780  RLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLR 839

Query: 1082 MCADCHNAAKLVSKVVHRDIIVRDNKRFHHFSAGICSCGDYW 1207
            +C DCHNAAK +SKVV+RDI+VRDNKRFHHF  GICSCGDYW
Sbjct: 840  ICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 57/218 (26%), Positives = 109/218 (50%), Gaps = 3/218 (1%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCV-RLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +++ +++N   + A+ +F  +  V   +P    +  V+ ACA L  L LG+ IH  A K 
Sbjct: 71  IVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKM 130

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELF 358
           +L  D FV +++I MY K G +E++ +VF  + E+++VSW  +I G+  +G  +++   F
Sbjct: 131 DLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAF 190

Query: 359 ERM--QSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDML 532
             M    E   PD  T +++L  C+    + +G+     +  K  +  +L     ++DM 
Sbjct: 191 REMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHG-LAVKLGLNEELMVNNSLIDMY 249

Query: 533 GRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDV 646
            +   L+ A  LL +  +K +   W +++       DV
Sbjct: 250 SKCRFLSEA-QLLFDKNDKKNIVSWNSMIGGYAREEDV 286



 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQC--VRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALK 175
           MI G+++     +   L ++MQ    +++  E  +++VL  C + + L+  KE+H ++ +
Sbjct: 276 MIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWR 335

Query: 176 AELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIEL 355
             L  +  V+++ I  Y + G +  S RVF  +  K + SW  ++ GY  +   + A++L
Sbjct: 336 HGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDL 395

Query: 356 FERMQSEGLKPDAFTFISLLMACS 427
           + +M   GL PD FT  SLL+ACS
Sbjct: 396 YLQMTDSGLDPDWFTIGSLLLACS 419


>ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like
            [Glycine max]
          Length = 975

 Score =  539 bits (1389), Expect = e-151
 Identities = 251/402 (62%), Positives = 323/402 (80%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            MI GFSQN  P +A+D FR+M    ++P EIAV  VL AC+Q++ALRLGKE+H FALKA 
Sbjct: 574  MITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH 633

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
            L+EDAFV+ ++IDMYAK GC+EQS  +F R+ EKD   W V+IAGYG+HG G  AIELFE
Sbjct: 634  LSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFE 693

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
             MQ++G +PD+FTF+ +L+AC+H+GLV EGLKY  +M+    ++PKLEHYAC+VDMLGRA
Sbjct: 694  LMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRA 753

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDLEPYKAENYVLVS 721
            G L  AL L+ EMP++PD+GIW +LLSSC+ +GD+ +G++VS+ LL+LEP KAENYVL+S
Sbjct: 754  GQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLS 813

Query: 722  NLFAKAGRWEDVRRVRGRMKEMGLKKDIGCSWIEVEGKIYNFIVGDKTLPDSEEIRQMWQ 901
            NL+A  G+W++VR+VR RMKE GL KD GCSWIE+ G +Y F+V D +L +S++I+Q W 
Sbjct: 814  NLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWI 873

Query: 902  ELEHKIGEIGYVPDTGSVLHDLDEQEKADILRGHSEKLAIAFGLLKTTKGMTVRICKNLR 1081
            +LE KI +IGY PDT  VLH+L+E+ K  IL+ HSEKLAI+FGLL T KG T+R+CKNLR
Sbjct: 874  KLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLR 933

Query: 1082 MCADCHNAAKLVSKVVHRDIIVRDNKRFHHFSAGICSCGDYW 1207
            +C DCHNA KLVSKVV RDIIVRDNKRFHHF  G+C+CGD+W
Sbjct: 934  ICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  114 bits (286), Expect = 4e-23
 Identities = 65/225 (28%), Positives = 112/225 (49%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            +I   +QNGFP K++DLF  M    + P    + S+L ACA+L  LR GKEIH F L+  
Sbjct: 473  LIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNG 532

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
            L  D F+  S++ +Y +   +     +F ++  K +V W VMI G+  +    +A++ F 
Sbjct: 533  LELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFR 592

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
            +M S G+KP       +L ACS    +  G K       K ++         ++DM  + 
Sbjct: 593  QMLSGGIKPQEIAVTGVLGACSQVSALRLG-KEVHSFALKAHLSEDAFVTCALIDMYAKC 651

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEIL 676
            G +  + N+ + + EK D  +W  +++    HG  +   ++ E++
Sbjct: 652  GCMEQSQNIFDRVNEK-DEAVWNVIIAGYGIHGHGLKAIELFELM 695



 Score = 97.1 bits (240), Expect = 8e-18
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 9/276 (3%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRM-QCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +++G+S+N     AI LF  +     L P    +  V  ACA +A + LG+ +H  ALKA
Sbjct: 165 LLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKA 224

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELF 358
               DAFV +++I MY K G +E + +VF  +R +++VSW  ++     +G   +   +F
Sbjct: 225 GGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVF 284

Query: 359 ERM---QSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDM 529
           +R+   + EGL PD  T ++++ AC+  G V  G+     +  K  I  ++     +VDM
Sbjct: 285 KRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHG-LAFKLGITEEVTVNNSLVDM 343

Query: 530 LGRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDL---EPYKA 700
             + G+L  A   L +M    +   W  ++      GD    + V E+L ++   E  + 
Sbjct: 344 YSKCGYLGEA-RALFDMNGGKNVVSWNTIIWGYSKEGDF---RGVFELLQEMQREEKVRV 399

Query: 701 ENYVLVSNLFAKAGRWE--DVRRVRGRMKEMGLKKD 802
               +++ L A +G  +   ++ + G     G  KD
Sbjct: 400 NEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKD 435



 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCV-RLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +I G+S+ G      +L + MQ   +++  E+ V++VL AC+    L   KEIH +A + 
Sbjct: 371 IIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRH 430

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELF 358
              +D  V+++ +  YAK   ++ + RVF  +  K + SW  +I  +  +G    +++LF
Sbjct: 431 GFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF 490

Query: 359 ERMQSEGLKPDAFTFISLLMACS 427
             M   G+ PD FT  SLL+AC+
Sbjct: 491 LVMMDSGMDPDRFTIGSLLLACA 513



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
 Frame = +2

Query: 95  AVVSVLSACAQLAALRLGKEIHCFALKA-ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGR 271
           A+  +L AC     + +G+++H     + +L  D  +S+ II MY+  G    S  VF  
Sbjct: 94  AIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDA 153

Query: 272 LREKDMVSWTVMIAGYGVHGRGKDAIELF-ERMQSEGLKPDAFTFISLLMACS------- 427
            +EKD+  +  +++GY  +   +DAI LF E + +  L PD FT   +  AC+       
Sbjct: 154 AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVEL 213

Query: 428 ----------------------------HSGLVGEGLKYFSEMRTKNYIEPKLEHYACMV 523
                                         G V   +K F  MR +N +      YAC  
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273

Query: 524 D-MLGRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDL 685
           +   G    +   L + EE    PD      ++ +C   G+V +G  V  +   L
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKL 328


>ref|XP_002322051.1| predicted protein [Populus trichocarpa] gi|222869047|gb|EEF06178.1|
            predicted protein [Populus trichocarpa]
          Length = 924

 Score =  536 bits (1381), Expect = e-150
 Identities = 255/402 (63%), Positives = 320/402 (79%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            MI+G+SQNG P +++ LFR+     +Q  EIA+VSV  AC+QL+ALRLGKE H + LKA 
Sbjct: 523  MISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKAL 582

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
             TEDAFV  SIIDMYAKSGCI++S +VF  L++K++ SW  +I  +G+HG GK+AIEL+E
Sbjct: 583  QTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYE 642

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
            RM+  G  PD FT+I +LMAC H+GLV EGLKYF EM+  N IEPKLEHYAC++DML RA
Sbjct: 643  RMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARA 702

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDLEPYKAENYVLVS 721
            G L+ AL L+ EMPE+ D  IW +LL SC+T G + +G+KV++ LL+LEP KAENYVL+S
Sbjct: 703  GRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLS 762

Query: 722  NLFAKAGRWEDVRRVRGRMKEMGLKKDIGCSWIEVEGKIYNFIVGDKTLPDSEEIRQMWQ 901
            NL+A  G+W+ VRRVR  MKE+GL+KD GCSWIEV G++Y+F+VGD   P S EIR +W+
Sbjct: 763  NLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWR 822

Query: 902  ELEHKIGEIGYVPDTGSVLHDLDEQEKADILRGHSEKLAIAFGLLKTTKGMTVRICKNLR 1081
             LE +I EIGY P+T SVLH++ E+EK DILRGHSEKLAI+FGLLKTTKG T+RI KNLR
Sbjct: 823  RLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLR 882

Query: 1082 MCADCHNAAKLVSKVVHRDIIVRDNKRFHHFSAGICSCGDYW 1207
            +CADCHNAAKL+SK V R+I+VRDNKRFHHF  G+CSC DYW
Sbjct: 883  ICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  101 bits (252), Expect = 3e-19
 Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 2/217 (0%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQC-VRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +++G+++NG     + +F  +      QP      SV+ AC  +  +RLG+ IH   +K 
Sbjct: 116 LVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKM 175

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIE-L 355
            L  D FV ++++ MY K G ++++ +VF  + E ++VSW  MI  +  +G  +D+ + L
Sbjct: 176 GLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLL 235

Query: 356 FERMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLG 535
            E +  EGL PD  T +++L  C+  G V  G+     +  K  +  ++     MV M  
Sbjct: 236 MEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHG-LAVKLGLSEEVMVNNAMVYMYS 294

Query: 536 RAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDV 646
           + G+LN A     +   K +   W  ++S+    GDV
Sbjct: 295 KCGYLNEAQMSFVKNNNK-NVVSWNTMISAFSLEGDV 330



 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCV--RLQPLEIAVVSVLSACAQLAALRLGKEIHCFALK 175
           MI+ FS  G  ++A +L + MQ     ++  E+ +++VL AC     LR  KE+H ++ +
Sbjct: 320 MISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR 379

Query: 176 AELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIEL 355
               +   +S++ I  YAK G +  + +VF  + +K + SW  +I G+  +G  + A+ L
Sbjct: 380 -HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHL 438

Query: 356 FERMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMR---TKNYIEPKLEHYACMVD 526
             +M   G +PD FT  SLL+AC+H     + L+Y  E+     +N +E        ++ 
Sbjct: 439 LFQMTYSGQQPDWFTISSLLLACAHL----KSLQYGKEIHGYVLRNGLETDFFVGTSLLS 494

Query: 527 MLGRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHG 640
                G  + A  L + M +K +   W A++S    +G
Sbjct: 495 HYIHCGKASSARVLFDRMKDK-NLVSWNAMISGYSQNG 531



 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 3/217 (1%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCVR-LQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           MI  FS+NGF   + DL   M     L P  + VV++L  CA    + +G  IH  A+K 
Sbjct: 218 MICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKL 277

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELF 358
            L+E+  V+++++ MY+K G + ++   F +   K++VSW  MI+ + + G   +A  L 
Sbjct: 278 GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLL 337

Query: 359 ERMQSEG--LKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDML 532
           + MQ +G  +K +  T +++L AC    L    LK       ++  +  +E     +   
Sbjct: 338 QEMQIQGEEMKANEVTILNVLPACLDK-LQLRSLKELHGYSFRHCFQ-HVELSNAFILAY 395

Query: 533 GRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGD 643
            + G LN A  +   + +K     W AL+     +GD
Sbjct: 396 AKCGALNSAEKVFHGIGDK-TVSSWNALIGGHAQNGD 431



 Score = 64.7 bits (156), Expect = 5e-08
 Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
 Frame = +2

Query: 71  VRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA-ELTEDAFVSSSIIDMYAKSGCIE 247
           + LQ  E A+  +L AC     +  G+ +H F   +     D  +++ +I MYA  G   
Sbjct: 38  ISLQAKE-AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPL 96

Query: 248 QSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFERMQSE-GLKPDAFTFISLLMAC 424
            S  VF  +  K+++ W  +++GY  +G   D +++F  + S+   +PD FTF S++ AC
Sbjct: 97  DSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC 156

Query: 425 SHSGLVGEGL-KYFSEMRTKNYIEPKLEHYACMVDMLGRAGHLNHALNLLEEMPEKPDAG 601
              G++   L +    M  K  +   +     +V M G+ G ++ A+ + + MPE  +  
Sbjct: 157 --GGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPE-TNLV 213

Query: 602 IWGALLSSCKTHG 640
            W +++ +   +G
Sbjct: 214 SWNSMICAFSENG 226


>ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
            gi|355484722|gb|AES65925.1| Pentatricopeptide repeat
            protein [Medicago truncatula]
          Length = 975

 Score =  529 bits (1362), Expect = e-148
 Identities = 244/402 (60%), Positives = 319/402 (79%)
 Frame = +2

Query: 2    MIAGFSQNGFPDKAIDLFRRMQCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAE 181
            MI GFSQN FP  A+D+F +M   ++ P EI+++  L AC+Q++ALRLGKE+HCFA+K+ 
Sbjct: 574  MINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH 633

Query: 182  LTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFE 361
            LTE +FV+ S+IDMYAK GC+EQS  +F R+  K  V+W V+I GYG+HG G+ AIELF+
Sbjct: 634  LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFK 693

Query: 362  RMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDMLGRA 541
             MQ+ G +PD+ TFI+LL AC+H+GLV EGL+Y  +M++   I+PKLEHYAC+VDMLGRA
Sbjct: 694  SMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRA 753

Query: 542  GHLNHALNLLEEMPEKPDAGIWGALLSSCKTHGDVVLGQKVSEILLDLEPYKAENYVLVS 721
            G LN AL L+ E+P+KPD+ IW +LLSSC+ + D+ +G+KV+  LL+L P KAENYVL+S
Sbjct: 754  GRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLIS 813

Query: 722  NLFAKAGRWEDVRRVRGRMKEMGLKKDIGCSWIEVEGKIYNFIVGDKTLPDSEEIRQMWQ 901
            N +A+ G+W++VR++R RMKE+GL+KD GCSWIE+ GK+  F+VGD++L  S +I+Q W 
Sbjct: 814  NFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWI 873

Query: 902  ELEHKIGEIGYVPDTGSVLHDLDEQEKADILRGHSEKLAIAFGLLKTTKGMTVRICKNLR 1081
            ELE KI +IGY PDT  VLH+L+E EK  ILR HSEKLAI+FGLL T KG T+R+CKNLR
Sbjct: 874  ELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLR 933

Query: 1082 MCADCHNAAKLVSKVVHRDIIVRDNKRFHHFSAGICSCGDYW 1207
            +C DCHNA KLVSK+  R+IIVRDNKRFHHF  G CSCGDYW
Sbjct: 934  ICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 53/194 (27%), Positives = 105/194 (54%), Gaps = 3/194 (1%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRM-QCVRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKA 178
           +++G+ +N     A+ +F  M       P    +  V+ AC  +  +RLG+ +H FALK 
Sbjct: 166 LLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKT 225

Query: 179 ELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELF 358
           ++  D FV +++I MY K G +E + +VF ++ ++++VSW  ++     +G  +++  LF
Sbjct: 226 KVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLF 285

Query: 359 ERMQS--EGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYACMVDML 532
           + + +  EGL PD  T ++++  C+  G V  G+  F  +  K  +  +L+  + ++DM 
Sbjct: 286 KGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMY 344

Query: 533 GRAGHLNHALNLLE 574
            + G+L  A  L +
Sbjct: 345 SKCGYLCEARVLFD 358



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 4/200 (2%)
 Frame = +2

Query: 2   MIAGFSQNGFPDKAIDLFRRMQCV-RLQPLEIAVVSVLSACAQLAALRLGKEIHCFALK- 175
           MI G+S++     A +L R+MQ   +++  E+ +++VL  C +       KEIH +AL+ 
Sbjct: 370 MIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRH 429

Query: 176 AELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIEL 355
             +  D  V+++ +  YAK G +  +  VF  +  K + SW  +I G+  +G  + A++L
Sbjct: 430 GFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDL 489

Query: 356 FERMQSEGLKPDAFTFISLLMACSHSGLVGEGLKYFSEMRTKNYIEPKLEHYAC--MVDM 529
           +  M+  GL+PD FT  SLL AC+    +  G +    M    +   +L+ + C  +V +
Sbjct: 490 YLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF---ELDEFICISLVSL 546

Query: 530 LGRAGHLNHALNLLEEMPEK 589
             + G +  A    + M EK
Sbjct: 547 YVQCGKILLAKLFFDNMEEK 566



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
 Frame = +2

Query: 20  QNGFPDKAIDLFRRMQC--VRLQPLEIAVVSVLSACAQLAALRLGKEIHCFALKAELTED 193
           +NG  +++  LF+ +      L P    +V+V+  CA+   +RLG   H  ALK  L  +
Sbjct: 274 ENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGE 333

Query: 194 AFVSSSIIDMYAKSGCIEQSWRVFGRLREKDMVSWTVMIAGYGVHGRGKDAIELFERMQS 373
             V+SS++DMY+K G + ++ RV     EK+++SW  MI GY      + A EL  +MQ 
Sbjct: 334 LKVNSSLLDMYSKCGYLCEA-RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQM 392

Query: 374 EG-LKPDAFTFISLLMAC 424
           E  +K +  T +++L  C
Sbjct: 393 EDKVKVNEVTLLNVLPVC 410



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
 Frame = +2

Query: 107 VLSACAQLAALRLGKEIHCF-ALKAELTEDAFVSSSIIDMYAKSGCIEQSWRVFGRLREK 283
           +L  C +   + +G++IH F +       D  + + ++ MY+       S  VF   R K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 284 DMVSWTVMIAGYGVHGRGKDAIELFERMQS-EGLKPDAFTFISLLMAC--SHSGLVGEGL 454
           ++  W  +++GY  +   +DA+ +F  M S     PD FT   ++ AC   +   +GE +
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 455 KYFSEMRTKNYIEPKLEHYACMVDMLGRAGHLNHALNLLEEMPEKPDAGIWGALLSSCKT 634
             F+ ++TK   +  + +   ++ M G+ G +  A+ + ++MP++ +   W +++ +C  
Sbjct: 219 HGFA-LKTKVLSDVFVGN--ALIAMYGKFGFVESAVKVFDKMPQR-NLVSWNSVMYACLE 274

Query: 635 HG 640
           +G
Sbjct: 275 NG 276