BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003134
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   164   7e-39
gb|AAZ08466.1| RNA polymerase II second largest subunit [Linanth...   164   7e-39
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   164   7e-39
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p...   164   7e-39
gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrh...   164   7e-39

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 ANAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPE 76
           ANAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPE
Sbjct: 462 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPE 521

Query: 75  GQACGLVKNLALMVYITV---ANPILEF 1
           GQACGLVKNLALMVYITV   ANPILEF
Sbjct: 522 GQACGLVKNLALMVYITVGSAANPILEF 549


>gb|AAZ08466.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 324

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 ANAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPE 76
           ANAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPE
Sbjct: 50  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPE 109

Query: 75  GQACGLVKNLALMVYITV---ANPILEF 1
           GQACGLVKNLALMVYITV   ANPILEF
Sbjct: 110 GQACGLVKNLALMVYITVGSAANPILEF 137


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 ANAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPE 76
           ANAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPE
Sbjct: 328 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPE 387

Query: 75  GQACGLVKNLALMVYITV---ANPILEF 1
           GQACGLVKNLALMVYITV   ANPILEF
Sbjct: 388 GQACGLVKNLALMVYITVGSAANPILEF 415


>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 ANAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPE 76
           ANAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPE
Sbjct: 356 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPE 415

Query: 75  GQACGLVKNLALMVYITV---ANPILEF 1
           GQACGLVKNLALMVYITV   ANPILEF
Sbjct: 416 GQACGLVKNLALMVYITVGSAANPILEF 443


>gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 ANAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPE 76
           ANAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPE
Sbjct: 469 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPE 528

Query: 75  GQACGLVKNLALMVYITV---ANPILEF 1
           GQACGLVKNLALMVYITV   ANPILEF
Sbjct: 529 GQACGLVKNLALMVYITVGSAANPILEF 556