BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003111
         (698 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm...   314   1e-83
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...   306   3e-81
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu...   304   1e-80
ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-...   300   1e-79
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li...   296   3e-78

>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
           gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
           Full=Retinoblastoma-related protein
           gi|223530511|gb|EEF32393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1020

 Score =  314 bits (804), Expect = 1e-83
 Identities = 167/236 (70%), Positives = 191/236 (80%), Gaps = 4/236 (1%)
 Frame = +1

Query: 1   LLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFEDL 180
           LLASLCN YDTSED+LR+T+EK N+LIA+ILKKKP +ASE K ENLD I+TDGL Y+EDL
Sbjct: 259 LLASLCNKYDTSEDELRKTMEKTNNLIADILKKKPHMASEYKNENLDNINTDGLIYYEDL 318

Query: 181 MEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSEH-INI-GAKRKFD 354
           ME+         LEKDY DAI  K ELDERVF+++E SLLG+GSLS   I++ G KRKFD
Sbjct: 319 MEESSLRSSLDILEKDYEDAIRCKGELDERVFINEEDSLLGSGSLSGGAISVTGTKRKFD 378

Query: 355 AISSPAKTITSPLSPPRSPAFSPGK--GLHHPKMAPTPVSTAMTTAKWLRTVISPLPSKP 528
            ISSP KTITSPLSP RSPA       G  + +MA TPVSTAMTTAKWLRTVISPLPSKP
Sbjct: 379 QISSPTKTITSPLSPHRSPASHTNGILGSTNSRMAATPVSTAMTTAKWLRTVISPLPSKP 438

Query: 529 SAELERFLSSCDRDITNDVTHRAHIILEAIFPRTALGERCLTGTLQSSNLMDSIWA 696
           S +LERFL+SCDRD+TNDV  RAHIILEAIFP  ALGERC+TG+LQS+NLMD+IWA
Sbjct: 439 SPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWA 494


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score =  306 bits (783), Expect = 3e-81
 Identities = 163/236 (69%), Positives = 189/236 (80%), Gaps = 4/236 (1%)
 Frame = +1

Query: 1   LLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFEDL 180
           LLASLCN YDTSE+ LR+++E  N+LIANILKKKP  ASE K ENL  I+ DGL Y+EDL
Sbjct: 275 LLASLCNKYDTSEEVLRKSMETTNNLIANILKKKPHSASEYKNENLVNINPDGLIYYEDL 334

Query: 181 MEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSE-HINI-GAKRKFD 354
           ME+         LEKDY+DAI NK ELDERVF+++E SLLG+GS+S   +NI GAKRKFD
Sbjct: 335 MEESSLQSSLNILEKDYDDAIRNKAELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFD 394

Query: 355 AISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTAMTTAKWLRTVISPLPSKP 528
            ISSP KTITSPLSP RSPA       G  + KMA TPVSTAMTTAKWLRT+ISPLPSKP
Sbjct: 395 LISSPTKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTIISPLPSKP 454

Query: 529 SAELERFLSSCDRDITNDVTHRAHIILEAIFPRTALGERCLTGTLQSSNLMDSIWA 696
           SA+LERFL SCD+D+TNDV  RA IILEAIFP ++LGERC+TG+LQS+NLMD+IWA
Sbjct: 455 SAQLERFLVSCDKDVTNDVIRRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWA 510


>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
           gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
           Full=Retinoblastoma-related protein
           gi|222844988|gb|EEE82535.1| hypothetical protein
           POPTRDRAFT_547794 [Populus trichocarpa]
          Length = 1035

 Score =  304 bits (778), Expect = 1e-80
 Identities = 162/236 (68%), Positives = 188/236 (79%), Gaps = 4/236 (1%)
 Frame = +1

Query: 1   LLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFEDL 180
           LLASLCN YDTSE+ LR+++E  N+LIANILKKKP  ASE K ENL  I+ DGL Y+EDL
Sbjct: 275 LLASLCNKYDTSEEVLRKSMETTNNLIANILKKKPHSASEYKNENLVNINPDGLIYYEDL 334

Query: 181 MEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSE-HINI-GAKRKFD 354
           ME+         LEKDY+DAI NK ELDERVF+++E SLLG+GS+S   +NI GAKRKFD
Sbjct: 335 MEESSLQSSLNILEKDYDDAIRNKAELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFD 394

Query: 355 AISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTAMTTAKWLRTVISPLPSKP 528
            ISSP KTITSPLSP RSPA       G  + KMA TPVSTAMTTAKWLRT+ISPLPSKP
Sbjct: 395 LISSPTKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTIISPLPSKP 454

Query: 529 SAELERFLSSCDRDITNDVTHRAHIILEAIFPRTALGERCLTGTLQSSNLMDSIWA 696
           SA+LERFL SCD+D+TNDV  RA IILEAIFP ++LGERC+ G+LQS+NLMD+IWA
Sbjct: 455 SAQLERFLVSCDKDVTNDVIRRAQIILEAIFPSSSLGERCVNGSLQSTNLMDNIWA 510


>ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-like [Glycine max]
          Length = 1002

 Score =  300 bits (769), Expect = 1e-79
 Identities = 156/236 (66%), Positives = 192/236 (81%), Gaps = 4/236 (1%)
 Frame = +1

Query: 1   LLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFEDL 180
           LLASLCN+Y+TSED+LR+T+EKAN++IA+ILKK+P LASEC+ ENL+ ID DGLTYF+DL
Sbjct: 248 LLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDL 307

Query: 181 MEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSE-HINIGA-KRKFD 354
           ME+         LEKDY+  I NK ELDER+F++++ SLL + SLS   +++G  KRKFD
Sbjct: 308 MEESSLPSSLNMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSVGGVKRKFD 367

Query: 355 AISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTAMTTAKWLRTVISPLPSKP 528
           +++SPAKTITSPLSP RSP        G  + KMA TPVSTAMTTAKWLRTVISPLPSKP
Sbjct: 368 SMASPAKTITSPLSPHRSPTSHTNGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSKP 427

Query: 529 SAELERFLSSCDRDITNDVTHRAHIILEAIFPRTALGERCLTGTLQSSNLMDSIWA 696
           S ELERFL+SCDRD+T+DV  RA IIL+AIFP + LGERC+TG+LQS+NLMD+IWA
Sbjct: 428 SPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWA 483


>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1024

 Score =  296 bits (758), Expect = 3e-78
 Identities = 157/237 (66%), Positives = 186/237 (78%), Gaps = 5/237 (2%)
 Frame = +1

Query: 1   LLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFEDL 180
           LL SLC++YDTSE++LR  +EKAN LI +ILKKKP LASEC  ++L+ IDT+GL YFE L
Sbjct: 263 LLGSLCDVYDTSEEELREVMEKANGLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGL 322

Query: 181 MEDXXXXXXXXTLEKDYNDAILNKCE-LDERVFVDDEQSLLGTGSLSEHINI--GAKRKF 351
           ME+         LEKDY DAI NK E LDERVFV+DE SLLG+GSLS       G KRK 
Sbjct: 323 MEEPSLSASLEILEKDYEDAIHNKGEQLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKL 382

Query: 352 DAISSPAKTITSPLSPPRSPAFSPGKGLH--HPKMAPTPVSTAMTTAKWLRTVISPLPSK 525
           D++ SPA+TITSP+SP RSPA      L+  + K+A TPVSTAMTTAKWLRTVISPLP+K
Sbjct: 383 DSMCSPARTITSPMSPLRSPASHANGTLNSGNTKIAATPVSTAMTTAKWLRTVISPLPAK 442

Query: 526 PSAELERFLSSCDRDITNDVTHRAHIILEAIFPRTALGERCLTGTLQSSNLMDSIWA 696
           PS E+ERFL+SCDRD+TNDV  RAHIILEAIFP TALGERC+ G+LQS++LMD+IWA
Sbjct: 443 PSVEMERFLASCDRDVTNDVVRRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWA 499