BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003106
         (1074 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [V...   415   e-113
ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago t...   399   e-109
gb|AFK37792.1| unknown [Lotus japonicus]                              391   e-106
ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-li...   391   e-106
ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-li...   385   e-104

>ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
            gi|147834996|emb|CAN61380.1| hypothetical protein
            VITISV_037546 [Vitis vinifera]
            gi|297746275|emb|CBI16331.3| unnamed protein product
            [Vitis vinifera]
          Length = 254

 Score =  415 bits (1066), Expect = e-113
 Identities = 208/254 (81%), Positives = 229/254 (90%), Gaps = 4/254 (1%)
 Frame = -2

Query: 1055 MAGKS----STYSLKKQHRLKKPLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSAY 888
            MAGKS    STYS     + K+P+F+D VDWVRPD RGFHQCRPAFL+TGAVNAASGSAY
Sbjct: 1    MAGKSAATPSTYSPSPAPKTKRPIFQD-VDWVRPDGRGFHQCRPAFLKTGAVNAASGSAY 59

Query: 887  VEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHKA 708
             EFG+TKVIVSVFGPRESKKAM YS  GRLNCNVSYTTFA  IRGQGSDHK YSSMLHKA
Sbjct: 60   AEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQGSDHKGYSSMLHKA 119

Query: 707  LEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCLG 528
            LEGA+++ESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSVSCLG
Sbjct: 120  LEGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLG 179

Query: 527  KNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLGE 348
            KNLV+DPI EEESYQDGSL+IT MPSRNEVTQLT+ GEWSTP++HEAMQ+CL+AC KL +
Sbjct: 180  KNLVIDPILEEESYQDGSLLITCMPSRNEVTQLTVNGEWSTPRVHEAMQICLEACSKLAK 239

Query: 347  IMRSCLRESASAPE 306
            I+RSCL+E+ASAP+
Sbjct: 240  IIRSCLKETASAPK 253


>ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
            gi|355507420|gb|AES88562.1| Exosome complex exonuclease
            MTR3 [Medicago truncatula]
          Length = 258

 Score =  399 bits (1026), Expect = e-109
 Identities = 203/251 (80%), Positives = 219/251 (87%), Gaps = 4/251 (1%)
 Frame = -2

Query: 1055 MAGKS----STYSLKKQHRLKKPLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSAY 888
            MAGKS    +TYS       KKPL     DW RPD RGFHQCRPAF RTGAVNAASGSAY
Sbjct: 1    MAGKSGTTPATYSPSLTTGKKKPLLLKEEDWTRPDGRGFHQCRPAFFRTGAVNAASGSAY 60

Query: 887  VEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHKA 708
             EFG+TKVIVSVFGPRESKKAM+YSD GRLNCNVSYTTF+T +RGQGSDHKEYSSMLHKA
Sbjct: 61   AEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLHKA 120

Query: 707  LEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCLG 528
            LEGA++L+SFPKTTVDVFALVLES GSDLPVVIS ASLALADAGI+MYDLV SVSVSCLG
Sbjct: 121  LEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVSVSCLG 180

Query: 527  KNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLGE 348
            KNLV+DPI EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL +
Sbjct: 181  KNLVIDPIFEEENSQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAK 240

Query: 347  IMRSCLRESAS 315
            IMRSCL+ESAS
Sbjct: 241  IMRSCLKESAS 251


>gb|AFK37792.1| unknown [Lotus japonicus]
          Length = 253

 Score =  391 bits (1005), Expect = e-106
 Identities = 199/255 (78%), Positives = 223/255 (87%), Gaps = 5/255 (1%)
 Frame = -2

Query: 1055 MAGKS----STYSLKKQHRLKKP-LFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSA 891
            MAGK+    +TYS       KK  L K+  DWVRPD RGFHQCRPAF RTGAVNAASGSA
Sbjct: 1    MAGKAGATPATYSPSPTTDKKKTSLIKE--DWVRPDGRGFHQCRPAFFRTGAVNAASGSA 58

Query: 890  YVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHK 711
            Y EFG+TKVIVSVFGPRESKKAMLYSD+GRLNCNVSYTTFAT +RGQGSDHK+YS+ML K
Sbjct: 59   YAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDK 118

Query: 710  ALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCL 531
            AL GA++LESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSVSCL
Sbjct: 119  ALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCL 178

Query: 530  GKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLG 351
             KNLV+DPI+EEE+ QDGS+MIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL 
Sbjct: 179  SKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLA 238

Query: 350  EIMRSCLRESASAPE 306
            ++MRSCL+E++ + +
Sbjct: 239  KVMRSCLKEASDSQD 253


>ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 255

 Score =  391 bits (1004), Expect = e-106
 Identities = 201/257 (78%), Positives = 220/257 (85%), Gaps = 6/257 (2%)
 Frame = -2

Query: 1055 MAGKS----STYSLKKQHRLKK--PLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGS 894
            MAGK     +TYS       KK  P+FK+  DWVRPD RGFHQCRPAF RTGAVNAASGS
Sbjct: 1    MAGKGGATPATYSPSPTTNRKKKPPIFKE--DWVRPDGRGFHQCRPAFFRTGAVNAASGS 58

Query: 893  AYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLH 714
            AY EFG+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEY +MLH
Sbjct: 59   AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYCAMLH 118

Query: 713  KALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSC 534
            KALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYD+V SVSVSC
Sbjct: 119  KALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDIVASVSVSC 178

Query: 533  LGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKL 354
              KNLV+DPI EEE  QDGSLMIT MPSR E+TQLT+TGEWST KI+E MQLCLDAC KL
Sbjct: 179  FNKNLVIDPILEEEIGQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLDACAKL 238

Query: 353  GEIMRSCLRESASAPEQ 303
             +IMRSCL+E AS  ++
Sbjct: 239  AKIMRSCLKEVASDSQE 255


>ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 254

 Score =  385 bits (989), Expect = e-104
 Identities = 199/256 (77%), Positives = 218/256 (85%), Gaps = 5/256 (1%)
 Frame = -2

Query: 1055 MAGKS----STYSLKKQHRLKKP-LFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSA 891
            MAGK     +TYS       KKP LF +  D  RPD R FHQCRPAF RTGAVNAASGSA
Sbjct: 1    MAGKGGSTPATYSPSPTTDKKKPSLFNE--DLARPDGRSFHQCRPAFFRTGAVNAASGSA 58

Query: 890  YVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHK 711
            Y E G+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEYSSMLHK
Sbjct: 59   YAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSSMLHK 118

Query: 710  ALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCL 531
            ALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYDLV SVSVSC 
Sbjct: 119  ALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSCF 178

Query: 530  GKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLG 351
             KNLV+DP+ EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL 
Sbjct: 179  NKNLVIDPVLEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLA 238

Query: 350  EIMRSCLRESASAPEQ 303
            +IMRSCL+E+ S  ++
Sbjct: 239  KIMRSCLKEAVSDSQE 254