BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003030
         (2457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              710   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   710   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   693   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   693   0.0  
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   673   0.0  

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  710 bits (1833), Expect = 0.0
 Identities = 348/530 (65%), Positives = 422/530 (79%)
 Frame = -3

Query: 2455 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 2276
            KRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT 
Sbjct: 394  KRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTF 453

Query: 2275 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLICGPLGADFDGD 2096
            LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKINPLICGPL ADFDGD
Sbjct: 454  LRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 513

Query: 2095 CIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMFKNFFFDKATA 1916
            C+H+FYPQSL A+AEVLELFSVE+QLLSSH+G+LNLQLA D+LLSLK++F+ +F +KA A
Sbjct: 514  CVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAA 573

Query: 1915 QQLAMFVSTNLPQPALLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVNQGEILKFDFN 1736
            QQL MFVS +LP+PALLK+   G  WTALQILQ+  P +FD +GER+ +++  ILK D+N
Sbjct: 574  QQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWISKSAILKVDYN 633

Query: 1735 RDMVESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFED 1556
            RD+++SL NEI++S+F + G  E L  F+S+QPLLMENLF EG+SV L+DFS+P    ++
Sbjct: 634  RDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQN 693

Query: 1555 LPMSIQEISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLXXXXXXXXX 1376
            +  ++++ISSLL+ LRS +NEL++LQ  NHL   K P  NF+L  S LGNL         
Sbjct: 694  IQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAI 753

Query: 1375 XXXXEQIGFLGIQLVDRGKFYSRNLVEDMTSLFLRKFADGGVEYPSEAFGLIKSCFFHGL 1196
                +QIGFLG QL ++GKFYSR LVE M  LF  K+   G +YPS  FGLI+SCFFHGL
Sbjct: 754  NKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGL 813

Query: 1195 NPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFS 1016
            +PYE++VHSI +RE++VRSSRGL+EPGTLFKNLM +LRDVV+CYDGTVRNVCSNSIIQF 
Sbjct: 814  DPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFE 873

Query: 1015 YEVESGMNGRRFYPPGEPVGALAVTPISVLSYKLVLDSSSSIKASWELMK 866
            Y V++    + F+P GEPVG LA T +S  +YK VLDSS S  +SWELMK
Sbjct: 874  YGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMK 923


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  710 bits (1833), Expect = 0.0
 Identities = 348/530 (65%), Positives = 422/530 (79%)
 Frame = -3

Query: 2455 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 2276
            KRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT 
Sbjct: 334  KRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTF 393

Query: 2275 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLICGPLGADFDGD 2096
            LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKINPLICGPL ADFDGD
Sbjct: 394  LRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD 453

Query: 2095 CIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMFKNFFFDKATA 1916
            C+H+FYPQSL A+AEVLELFSVE+QLLSSH+G+LNLQLA D+LLSLK++F+ +F +KA A
Sbjct: 454  CVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAA 513

Query: 1915 QQLAMFVSTNLPQPALLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVNQGEILKFDFN 1736
            QQL MFVS +LP+PALLK+   G  WTALQILQ+  P +FD +GER+ +++  ILK D+N
Sbjct: 514  QQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWISKSAILKVDYN 573

Query: 1735 RDMVESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFED 1556
            RD+++SL NEI++S+F + G  E L  F+S+QPLLMENLF EG+SV L+DFS+P    ++
Sbjct: 574  RDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQN 633

Query: 1555 LPMSIQEISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLXXXXXXXXX 1376
            +  ++++ISSLL+ LRS +NEL++LQ  NHL   K P  NF+L  S LGNL         
Sbjct: 634  IQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAI 693

Query: 1375 XXXXEQIGFLGIQLVDRGKFYSRNLVEDMTSLFLRKFADGGVEYPSEAFGLIKSCFFHGL 1196
                +QIGFLG QL ++GKFYSR LVE M  LF  K+   G +YPS  FGLI+SCFFHGL
Sbjct: 694  NKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGL 753

Query: 1195 NPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFS 1016
            +PYE++VHSI +RE++VRSSRGL+EPGTLFKNLM +LRDVV+CYDGTVRNVCSNSIIQF 
Sbjct: 754  DPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFE 813

Query: 1015 YEVESGMNGRRFYPPGEPVGALAVTPISVLSYKLVLDSSSSIKASWELMK 866
            Y V++    + F+P GEPVG LA T +S  +YK VLDSS S  +SWELMK
Sbjct: 814  YGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMK 863


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  693 bits (1788), Expect = 0.0
 Identities = 340/531 (64%), Positives = 420/531 (79%), Gaps = 1/531 (0%)
 Frame = -3

Query: 2455 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 2276
            K VNEIG+P E+AQRITFEE+V+  N  +LQ+LVDKKLCLTY DG+S YSLREGS GHT 
Sbjct: 334  KLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTY 393

Query: 2275 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLICGPLGADFDGD 2096
            L+ GQ+VHRRIMDGD+VFINRPP+THKHSLQAL VY+H+DH VKINPLICGPL ADFDGD
Sbjct: 394  LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGD 453

Query: 2095 CIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMFKNFFFDKATA 1916
            CIH+FYPQS+AA+AEVL LFSVE+QLLSSH+G+LNLQLAND+LLSLK+MF+ +F  KA A
Sbjct: 454  CIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAA 513

Query: 1915 QQLAMFVSTNLPQPALLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVNQGEILKFDFN 1736
            QQLAMFVS+ LP PALL   S    WTALQILQ+V P  FD  G+ Y++     LKFDF+
Sbjct: 514  QQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFD 573

Query: 1735 RDMVESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFED 1556
            RD + SL NEI++S+F   G +E L  F+S+QPLLME++F EG+SV L D+S+P +F + 
Sbjct: 574  RDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQA 633

Query: 1555 LPMSIQEISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLXXXXXXXXX 1376
            L  +IQ +S LL++LRS  NELVELQ+ NHL SVK P  NF+LKLS LG L         
Sbjct: 634  LQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAI 693

Query: 1375 XXXXEQIGFLGIQLVDRGKFYSRNLVEDMTSLFLRKFADGGVEYPSEAFGLIKSCFFHGL 1196
                +QIGFLG+QL D+G+FYS++L+ED+ SLF  +++   ++YPS  FGL+K CFFHGL
Sbjct: 694  NKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGL 753

Query: 1195 NPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFS 1016
            +PYE++VHSI +REV+VRSSRGLTEPGTLFKNLM +LRDVV+CYDGTVRNVCSNSIIQ  
Sbjct: 754  DPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLE 813

Query: 1015 YEVESG-MNGRRFYPPGEPVGALAVTPISVLSYKLVLDSSSSIKASWELMK 866
            Y +++G M     +PPGEPVG LA T +S  +YK VLDS+ S  +SW++MK
Sbjct: 814  YGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMK 864


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  693 bits (1788), Expect = 0.0
 Identities = 340/531 (64%), Positives = 420/531 (79%), Gaps = 1/531 (0%)
 Frame = -3

Query: 2455 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 2276
            K VNEIG+P E+AQRITFEE+V+  N  +LQ+LVDKKLCLTY DG+S YSLREGS GHT 
Sbjct: 364  KLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTY 423

Query: 2275 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLICGPLGADFDGD 2096
            L+ GQ+VHRRIMDGD+VFINRPP+THKHSLQAL VY+H+DH VKINPLICGPL ADFDGD
Sbjct: 424  LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGD 483

Query: 2095 CIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMFKNFFFDKATA 1916
            CIH+FYPQS+AA+AEVL LFSVE+QLLSSH+G+LNLQLAND+LLSLK+MF+ +F  KA A
Sbjct: 484  CIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAA 543

Query: 1915 QQLAMFVSTNLPQPALLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVNQGEILKFDFN 1736
            QQLAMFVS+ LP PALL   S    WTALQILQ+V P  FD  G+ Y++     LKFDF+
Sbjct: 544  QQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFD 603

Query: 1735 RDMVESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFED 1556
            RD + SL NEI++S+F   G +E L  F+S+QPLLME++F EG+SV L D+S+P +F + 
Sbjct: 604  RDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQA 663

Query: 1555 LPMSIQEISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLXXXXXXXXX 1376
            L  +IQ +S LL++LRS  NELVELQ+ NHL SVK P  NF+LKLS LG L         
Sbjct: 664  LQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAI 723

Query: 1375 XXXXEQIGFLGIQLVDRGKFYSRNLVEDMTSLFLRKFADGGVEYPSEAFGLIKSCFFHGL 1196
                +QIGFLG+QL D+G+FYS++L+ED+ SLF  +++   ++YPS  FGL+K CFFHGL
Sbjct: 724  NKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGL 783

Query: 1195 NPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFS 1016
            +PYE++VHSI +REV+VRSSRGLTEPGTLFKNLM +LRDVV+CYDGTVRNVCSNSIIQ  
Sbjct: 784  DPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLE 843

Query: 1015 YEVESG-MNGRRFYPPGEPVGALAVTPISVLSYKLVLDSSSSIKASWELMK 866
            Y +++G M     +PPGEPVG LA T +S  +YK VLDS+ S  +SW++MK
Sbjct: 844  YGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMK 894


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 842

 Score =  673 bits (1736), Expect = 0.0
 Identities = 335/529 (63%), Positives = 408/529 (77%)
 Frame = -3

Query: 2452 RVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTIL 2273
            +VN++G+P EIAQRITFEE+V+  N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT L
Sbjct: 255  KVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFL 314

Query: 2272 RVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLICGPLGADFDGDC 2093
            R GQVVHRRI+DGDVVFINRPP+THKHSLQALSVYVH+DHTVKINPLICGPL ADFDGDC
Sbjct: 315  RPGQVVHRRIIDGDVVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDC 374

Query: 2092 IHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMFKNFFFDKATAQ 1913
            +H+FYPQSLAA+AEVLELFSVE+QLLSSH+G+LNLQL  D+LLSLK++FK  F DK+ AQ
Sbjct: 375  VHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIFKACFLDKSAAQ 434

Query: 1912 QLAMFVSTNLPQPALLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVNQGEILKFDFNR 1733
            QLAMFVS +LPQPALLK   +   WTA QILQ   P  F+  GER+++N   +LK DFNR
Sbjct: 435  QLAMFVSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFNCSGERFLINNSNVLKVDFNR 494

Query: 1732 DMVESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDL 1553
            D+V S+ NEI+ S+F + GS   L  FN++QPLLMENLF EG+SV LKDFS+ ++  + +
Sbjct: 495  DVVASMINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSISQAVKQSI 554

Query: 1552 PMSIQEISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLXXXXXXXXXX 1373
              S + IS LL  LRS +NELVELQV NH+  VK P + F+L  S LG L          
Sbjct: 555  QESFKVISPLLCNLRSTYNELVELQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVA 614

Query: 1372 XXXEQIGFLGIQLVDRGKFYSRNLVEDMTSLFLRKFADGGVEYPSEAFGLIKSCFFHGLN 1193
               +QIGFLG+Q+ DRGK YS+ LVED+ S F  K+    + YPS  +GLI+S FFHGL+
Sbjct: 615  KLVQQIGFLGLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLD 674

Query: 1192 PYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFSY 1013
             YE++ HSI +REV+VRSSRGL+EPGTLFKNLM +LRDVV+CYDGTVRNVCSNSIIQ  Y
Sbjct: 675  AYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQSEY 734

Query: 1012 EVESGMNGRRFYPPGEPVGALAVTPISVLSYKLVLDSSSSIKASWELMK 866
             V+ G   +  +P GEPVG LA T +S  +YK VLDS+ S  +SW++MK
Sbjct: 735  GVKVGAESQSLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSSWDMMK 783