BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003026
         (1879 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   520   e-145
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   516   e-144
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   511   e-142
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   508   e-141
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   499   e-139

>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  520 bits (1340), Expect = e-145
 Identities = 297/546 (54%), Positives = 361/546 (66%), Gaps = 14/546 (2%)
 Frame = -1

Query: 1729 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY--TSRKPS 1556
            M +LENLLLEAAGRT   G+NRHS                               SRKPS
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 1555 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXD-------VGSDLYKDDSDREELAQ 1397
            GSQVPLKKRLDPT                              VG DLYKDD DR +LA 
Sbjct: 61   GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 1396 MTELEREMILSERAQRRDDQRLREGVRAKQVVKK--PQFVKTPDVPXXXXXXXXXXXXXX 1223
            M+EL+REMILS+RA +++D+ L E +RAK    K  P   +TP +P              
Sbjct: 121  MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 1222 XAKDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRKPVVAAXXXXXXXX 1043
             AKDDALNELRAKRLKQQDPE HR  + RD  RGN++ R  SP +RKP  A         
Sbjct: 181  AAKDDALNELRAKRLKQQDPEAHR--KLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQS 238

Query: 1042 XXXXXXXSRDDGSAGEEDLVDSDEERSNKEED-LTLEDIKETTIRRSKLAKWFMEPFFEE 866
                   S D+GS G+  ++DSD+ERS    D  T EDIKE TIRRSKLAKW MEPFFEE
Sbjct: 239  ESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEE 298

Query: 865  LIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEAR 692
            LIVGCFVRVGIG+      YRLC+V+NVDATEP++QY+LENK THKYL+V WG   S AR
Sbjct: 299  LIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAAR 358

Query: 691  WQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAISYVYSSETVKIML 512
            WQMA++S+S PL+ E+ +WV+ +++ G R+ S+QD++EK+EAIQK  ++VYS+ TVK ML
Sbjct: 359  WQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQML 418

Query: 511  QEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 332
            Q+KKSAS+RPLNIAAEK+RLRREM+VA SK ++AEVERI+ RL++LEA S++ +  D KA
Sbjct: 419  QDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEA-SRRLQMKDAKA 477

Query: 331  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 152
            +RLAEMN+KNR ENFK ASE + +  DLK GE GYDPFSRRWTRSRNYYVSN AG    A
Sbjct: 478  IRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSN-AGEANGA 535

Query: 151  ASANGD 134
            A A G+
Sbjct: 536  AEAAGN 541


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  516 bits (1329), Expect = e-144
 Identities = 286/544 (52%), Positives = 366/544 (67%), Gaps = 14/544 (2%)
 Frame = -1

Query: 1729 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY--TSRKPS 1556
            M +LENLLLEAAGRTG  G+NR++                              +SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 1555 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXD-------VGSDLYKDDSDREELAQ 1397
            GSQVPLKKRLDPT                              VG DLYK++ DR +LAQ
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 1396 MTELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVK--TPDVPXXXXXXXXXXXXXX 1223
            M+ELEREMILSERA ++ D+ L E +R+K+  ++    +  TP +P              
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 1222 XA-KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRKPVVAAXXXXXXX 1046
             A KDDALNEL+A+RLKQQDPE HR  + RD  R  S  R  SP++RK   +A       
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHR--KLRDASRRGSGSRGFSPIKRKRFTSASLSSSSS 238

Query: 1045 XXXXXXXXSRDDGSAGEEDLVDSDEERSNKEEDLTLEDIKETTIRRSKLAKWFMEPFFEE 866
                      D+GS G+  + DSD++     +  T +DI+E TIRRSKLAKWFMEP+FEE
Sbjct: 239  ESESRSHS-EDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEE 297

Query: 865  LIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEAR 692
            LIVGCFVRVGIG+ +    YRLC+V+NVDA +P++ Y+LENK+T+KYL+V WG   S AR
Sbjct: 298  LIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAAR 357

Query: 691  WQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAISYVYSSETVKIML 512
            WQMA+IS+S P + E+ +WVR +++ G R+P++QD++EK+EAI+K+ ++VYS+ TVK ML
Sbjct: 358  WQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQML 417

Query: 511  QEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 332
            QEKKSASSRPLN+AAEK+RLRRE+EVA+SK++ AEVERI+AR++ELEA S+Q +G D KA
Sbjct: 418  QEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEA-SRQTQGKDAKA 476

Query: 331  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 152
            +RLAEMN+KNRAENF+ ASE K +NT LK GE GYDPFSRRWTRSRNYYVS  AGGD AA
Sbjct: 477  IRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAA 536

Query: 151  ASAN 140
            A+ N
Sbjct: 537  ATNN 540


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  511 bits (1315), Expect = e-142
 Identities = 286/548 (52%), Positives = 365/548 (66%), Gaps = 16/548 (2%)
 Frame = -1

Query: 1729 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY---TSRKP 1559
            M +LENLLLEAAGRTG  G+NR+S                                SRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 1558 SGSQVPLKKRLDPT-------XXXXXXXXXXXXXXXXXXXXXXDVGSDLYKDDSDREELA 1400
            SGSQVPLKKRL+                               D+G DLYKD+ DR++LA
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 1399 QMTELEREMILSERAQRRDDQRLREGVRAKQVVKKP--QFVKTPDVP-XXXXXXXXXXXX 1229
            QM+EL+RE+IL++RA ++ D+ L E +R+K+   KP     +TP +P             
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 1228 XXXAKDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRKPVVAA-XXXXX 1052
               AKDDALNELRAKRLKQQDPE HR  + RD  RG++  R  + V++    +A      
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHR--KLRDASRGSAGSRGFAQVKKNNFTSARLSSSS 238

Query: 1051 XXXXXXXXXXSRDDGSAGEEDLVDSDEERSNKEEDLTLEDIKETTIRRSKLAKWFMEPFF 872
                      S D+GS G+  + DSDE+        T EDIKE TIRR+KLAKWFMEP+F
Sbjct: 239  SESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWF 298

Query: 871  EELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWG--RSE 698
            EELI+GCFVRVGIG+ +    YRLC+V+NVDA EP+K Y+LENKST+KYL+VTWG   S 
Sbjct: 299  EELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSA 358

Query: 697  ARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAISYVYSSETVKI 518
            ARWQMA++S+S P + E+ +WVR  ++ G R+PS+QD++EK+EAI+K+ ++VYS+ TVK 
Sbjct: 359  ARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQ 418

Query: 517  MLQEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDT 338
            MLQEKKSASSRPLN+AAEK+RLRRE+E+A+S+ ++AEVERI+AR+ ELEA S+Q K  D 
Sbjct: 419  MLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEA-SRQAKVKDA 477

Query: 337  KAVRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDE 158
            KA+RLAEMN+KNR ENF+ ASE K INT LK GE GYDPFSRRWTRSRNYYVSN AGGD+
Sbjct: 478  KALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDD 537

Query: 157  AAASANGD 134
            A A++N +
Sbjct: 538  AVAASNSE 545


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  508 bits (1308), Expect = e-141
 Identities = 288/553 (52%), Positives = 363/553 (65%), Gaps = 22/553 (3%)
 Frame = -1

Query: 1729 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXYT--SRKPS 1556
            M +LENLLLEAAGRTG  G+NRHS                               SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 1555 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXD------VGSDLYKDDSDREELAQM 1394
            GSQVPLKKRLDPT                      D      +G DLYKD+ DR +L++M
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 1393 TELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVKTPDVPXXXXXXXXXXXXXXXA- 1217
            TEL+REMILS+RA ++DD+ L   + +K+   K    +    P               + 
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADRSA 180

Query: 1216 KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRKPVVAAXXXXXXXXXX 1037
            K+DALNELRAKRLKQQDPE HR  R R+  R N+  R  SP +RKP  +           
Sbjct: 181  KNDALNELRAKRLKQQDPEAHR--RLREASR-NAGSRHFSPPKRKPFTSTSLSSSSHSES 237

Query: 1036 XXXXXSRDDGSAGEEDLVDSDEERSNK-EEDLTLEDIKETTIRRSKLAKWFMEPFFEELI 860
                 S D+GS G+  +VDSD++R+    E  + +D+KE TIRRSKLAKWFMEPFFEELI
Sbjct: 238  ESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELI 297

Query: 859  VGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQ 686
            VGCFVRVGIG+ +    YRLC+VKNVDA+EP++QY+LENK+T+KYL+V WG   S ARWQ
Sbjct: 298  VGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 357

Query: 685  MAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAISYVYSSETVKIMLQE 506
            MA++S+S PL+ EF +WV+ + + G R+PS+QDV+EK++AIQKAI++VYS+ TVK MLQE
Sbjct: 358  MAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQE 417

Query: 505  KKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKAVR 326
            KKSAS+RPLN+AAEK+RLRRE+E+A+SK ++AEVERI+ RL ELEA S+Q K  D KA++
Sbjct: 418  KKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEA-SRQAKQKDAKALK 476

Query: 325  LAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYV----------SN 176
            LAEMN+KNR ENFK ASE K +NT LK GE GYDPFSRRWTRSRNYY           +N
Sbjct: 477  LAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNN 536

Query: 175  TAGGDEAAASANG 137
            +  G+ A A +NG
Sbjct: 537  SVNGNVAGAGSNG 549


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  499 bits (1286), Expect = e-139
 Identities = 284/542 (52%), Positives = 358/542 (66%), Gaps = 12/542 (2%)
 Frame = -1

Query: 1729 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXYT--SRKPS 1556
            M +LENLLLEAAGRTG  G+NRHS                               SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 1555 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXD------VGSDLYKDDSDREELAQM 1394
            GSQVPLKKRLDPT                      D      +G DLYKD+ DR +L++M
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 1393 TELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVKTPDVPXXXXXXXXXXXXXXXA- 1217
            TEL+REMILS+RA ++DD+ L   + +K+   K    +    P               + 
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRSA 180

Query: 1216 KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRKPVVAAXXXXXXXXXX 1037
            K+DALNELRAKRLKQQDPE HR  R R+  R N+  R  SP +RK   +           
Sbjct: 181  KNDALNELRAKRLKQQDPEAHR--RLREASR-NAGPRHFSPPKRKTFTSTSLSSSSHSES 237

Query: 1036 XXXXXSRDDGSAGEEDLVDSDEERSNK-EEDLTLEDIKETTIRRSKLAKWFMEPFFEELI 860
                 S D+GS G+  + DSD++R+    E  + +DIKE TIRRSKLAKWFMEPFFEELI
Sbjct: 238  ESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELI 297

Query: 859  VGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQ 686
            VGCFVRVGIG+ +    YRLC+VKNVDA+EP++QY+LENK+T+KYL+V WG   S ARWQ
Sbjct: 298  VGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQ 357

Query: 685  MAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAISYVYSSETVKIMLQE 506
            MA++S+S P++ EF +WV+ +   G R+PS+QDV+EK++AIQKAI++VYS+ TVK MLQE
Sbjct: 358  MAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQE 417

Query: 505  KKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKAVR 326
            KKSAS+RPLN+AAEK+RLRRE+E+A+SK ++AEVERI+ RL+ELEA S+Q K  D KA++
Sbjct: 418  KKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEA-SRQAKQKDAKALK 476

Query: 325  LAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAAAS 146
            LAEMN+KNR ENFK ASE K +N  LK GE GYDPFSRRWTRSRNYY +    G++AAA 
Sbjct: 477  LAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKP--GEKAAAG 534

Query: 145  AN 140
             N
Sbjct: 535  NN 536