BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003025
         (856 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36035.3| unnamed protein product [Vitis vinifera]              388   e-106
ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [...   388   e-106
ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|2...   387   e-105
ref|XP_003627060.1| DNA repair protein radA-like protein [Medica...   373   e-101
ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [...   372   e-101

>emb|CBI36035.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  388 bits (997), Expect = e-106
 Identities = 204/284 (71%), Positives = 231/284 (81%)
 Frame = -3

Query: 854  MTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLAAMIAEGSNSGRAG 675
            M WRIPL G F                          GKST LLQ+AA+IAEG + G + 
Sbjct: 184  MNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDIGGSS 243

Query: 674  PAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLSPRVLIIDSIQTVY 495
            P +YVSGEESVEQIGNRADRMRI TE+LFLYS+TDIEDIL ++ +LSPR L++DSIQTVY
Sbjct: 244  PVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDILGQVHLLSPRALVVDSIQTVY 303

Query: 494  MKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGPRVLEHIVDVVLYM 315
            +KGV GS GGL QVKECTS+LLRFAKKTNIPV LIGHVTK+GDIAGPRVLEHIVDVVLYM
Sbjct: 304  LKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYM 363

Query: 314  EGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSEQHSDSAVLAGHAV 135
            EGEK+S+HR LRSVKNRFGSTDELGVFEM+Q GLQ VSNPS++FLSEQ+SDS +L G AV
Sbjct: 364  EGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSEQNSDSEILTGLAV 423

Query: 134  AVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLI 3
            AVI+DGSRSFLLEIQALCLS S+VARQ NGV  +RA+MIIAVL+
Sbjct: 424  AVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMIIAVLM 467


>ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera]
          Length = 624

 Score =  388 bits (997), Expect = e-106
 Identities = 204/284 (71%), Positives = 231/284 (81%)
 Frame = -3

Query: 854  MTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLAAMIAEGSNSGRAG 675
            M WRIPL G F                          GKST LLQ+AA+IAEG + G + 
Sbjct: 225  MNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDIGGSS 284

Query: 674  PAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLSPRVLIIDSIQTVY 495
            P +YVSGEESVEQIGNRADRMRI TE+LFLYS+TDIEDIL ++ +LSPR L++DSIQTVY
Sbjct: 285  PVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDILGQVHLLSPRALVVDSIQTVY 344

Query: 494  MKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGPRVLEHIVDVVLYM 315
            +KGV GS GGL QVKECTS+LLRFAKKTNIPV LIGHVTK+GDIAGPRVLEHIVDVVLYM
Sbjct: 345  LKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYM 404

Query: 314  EGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSEQHSDSAVLAGHAV 135
            EGEK+S+HR LRSVKNRFGSTDELGVFEM+Q GLQ VSNPS++FLSEQ+SDS +L G AV
Sbjct: 405  EGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSEQNSDSEILTGLAV 464

Query: 134  AVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLI 3
            AVI+DGSRSFLLEIQALCLS S+VARQ NGV  +RA+MIIAVL+
Sbjct: 465  AVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMIIAVLM 508


>ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|222847004|gb|EEE84551.1|
           predicted protein [Populus trichocarpa]
          Length = 525

 Score =  387 bits (993), Expect = e-105
 Identities = 203/284 (71%), Positives = 228/284 (80%)
 Frame = -3

Query: 854 MTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLAAMIAEGSNSGRAG 675
           + WRIPL GLF                          GKST LLQ+AA+IA+  + G + 
Sbjct: 125 LNWRIPLSGLFGSEVERVLGGGLVPGSLVLVGGDPGVGKSTLLLQVAAIIADSEDPGGSA 184

Query: 674 PAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLSPRVLIIDSIQTVY 495
           P +YVSGEESVEQIGNRADRM IGTE+L+LYS+TDIEDIL KIQ LSPR LIIDSIQTVY
Sbjct: 185 PVVYVSGEESVEQIGNRADRMEIGTEELYLYSSTDIEDILGKIQHLSPRALIIDSIQTVY 244

Query: 494 MKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGPRVLEHIVDVVLYM 315
           +KGV GS GGL QVKECTS+LLRFAK TNIP+LLIGHV K+GDIAGPRVLEHIVDVVLYM
Sbjct: 245 LKGVAGSAGGLSQVKECTSALLRFAKTTNIPILLIGHVNKSGDIAGPRVLEHIVDVVLYM 304

Query: 314 EGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSEQHSDSAVLAGHAV 135
           EGEKYS+HR LR VKNRFGSTDELGVFEMSQ GL  VSNPS+IFL+EQHSDS  LAG AV
Sbjct: 305 EGEKYSSHRLLRPVKNRFGSTDELGVFEMSQLGLAVVSNPSEIFLTEQHSDSDFLAGLAV 364

Query: 134 AVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLI 3
           AVI+DGSRSFL+EIQALC+S SSV+R  NG+Q +RA+MII+VLI
Sbjct: 365 AVIMDGSRSFLIEIQALCVSGSSVSRHINGIQSSRADMIISVLI 408


>ref|XP_003627060.1| DNA repair protein radA-like protein [Medicago truncatula]
            gi|355521082|gb|AET01536.1| DNA repair protein radA-like
            protein [Medicago truncatula]
          Length = 643

 Score =  373 bits (958), Expect = e-101
 Identities = 194/282 (68%), Positives = 227/282 (80%)
 Frame = -3

Query: 848  WRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLAAMIAEGSNSGRAGPA 669
            WRI L G F                          GKST LLQ+AAM+AEG     A P 
Sbjct: 158  WRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQVAAMLAEGDEDVGASPV 217

Query: 668  IYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLSPRVLIIDSIQTVYMK 489
            +YVSGEESVEQIGNRADR+ IG+ D++LYS+ DIEDIL+K+Q +SPR L++DS+QTVY+K
Sbjct: 218  VYVSGEESVEQIGNRADRLTIGS-DIYLYSSNDIEDILKKVQYISPRALVVDSVQTVYLK 276

Query: 488  GVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGPRVLEHIVDVVLYMEG 309
            G+ GSPGG++QVKECTS+LLRFAK TNIPVLLIGHVTK+GDIAGPRVLEHIVDVVLYMEG
Sbjct: 277  GIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEG 336

Query: 308  EKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSEQHSDSAVLAGHAVAV 129
            EKY++HR LR+VKNRFGSTDELGVFEMS  GLQAVSN S++FLSEQ  DS VLAG AVAV
Sbjct: 337  EKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQDLDSDVLAGLAVAV 396

Query: 128  IIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLI 3
            I+DGSR+FL+EIQALCLS S+ +RQFNG+Q NRA+MII+VLI
Sbjct: 397  IMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLI 438


>ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [Glycine max]
          Length = 560

 Score =  372 bits (956), Expect = e-101
 Identities = 194/282 (68%), Positives = 227/282 (80%)
 Frame = -3

Query: 848  WRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLAAMIAEGSNSGRAGPA 669
            WRIPL G F                          GKST LLQ+AA+IA+G + G A P 
Sbjct: 159  WRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDPGVGKSTLLLQIAAIIAKGDSDGEACPV 218

Query: 668  IYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLSPRVLIIDSIQTVYMK 489
            +YVSGEESVEQIGNRADR+RI + D++LYS+ D+EDIL+K+Q LSP  LI+DSIQTVY+K
Sbjct: 219  VYVSGEESVEQIGNRADRLRIES-DIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLK 277

Query: 488  GVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGPRVLEHIVDVVLYMEG 309
            G+ GSPGG++QVKECTS+LLRFAKKTNIPVLLIGHVTK+GDIAGPRVLEHIVDVVLYMEG
Sbjct: 278  GIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEG 337

Query: 308  EKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSEQHSDSAVLAGHAVAV 129
            EKYS+HR LR+VKNRFGS DELGVFEMS  GLQAVSN S++FLSEQ  DS +LAG AVAV
Sbjct: 338  EKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQAVSNASEMFLSEQLLDSEILAGLAVAV 397

Query: 128  IIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLI 3
            I+DGSR+FL+EIQALCLS S+ +RQ NG+Q  RA+MII+VLI
Sbjct: 398  IMDGSRTFLIEIQALCLSGSTGSRQVNGIQQKRADMIISVLI 439