BLASTX nr result
ID: Coptis25_contig00003022
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00003022 (2356 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v... 675 0.0 emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera] 670 0.0 ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|2... 648 0.0 ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric... 645 0.0 ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine... 641 0.0 >ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera] Length = 1185 Score = 675 bits (1741), Expect = 0.0 Identities = 359/540 (66%), Positives = 414/540 (76%), Gaps = 6/540 (1%) Frame = -3 Query: 1604 KPNLTKLATPTGDAKVNGSKQAFNSEKASVTKIAAQSVQASEILPAGDK----VDKSNLT 1437 K +T + A+ +K + + K+++TK +QS QAS+ G+K +D S T Sbjct: 269 KEQVTSTDASSDVAQKKSTKSSSEANKSNITK-KSQSPQASKNNSTGNKPVEALDSSVST 327 Query: 1436 PGNSKKTVEXXXXXXXXXXXXXVHMKPDKAPAV--LVEVKKRPLEKGLRSLYPPTGKSVV 1263 SKK K + + +++RPL+K LYP +GKSVV Sbjct: 328 KSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKK----LYPSSGKSVV 383 Query: 1262 VVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKS 1083 VVES+TKAKVIQ YLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKS Sbjct: 384 VVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKS 443 Query: 1082 IKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVARVVFHEITESSIKSA 903 IKVAL GAENLILASDPDREGEAIAWHI EML QQDALH+++ VARVVFHEITESSIKSA Sbjct: 444 IKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSA 503 Query: 902 MQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQSAGRVQSAALALICDREME 723 + PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQSAGRVQSAALALICDREME Sbjct: 504 LDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREME 563 Query: 722 IDGFKTQDYWTVDVEFNKLEPGSLGKISFSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMA 543 ID FK Q+YWTV+VEFN+ + S+ F S+LTH +SKKL QF EQ++ Sbjct: 564 IDEFKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEIN 623 Query: 542 SSSFEVLGSKRSKARRNPPTPYITSTLQQDAANKLNFTAGHTMKLAQKLYEGVKLSDDEA 363 S F+V+GSKR+K R+NPPTPYITSTLQQDAANKL+F+A +TMKLAQ+LYEGV+LSD +A Sbjct: 624 SLEFKVIGSKRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQRLYEGVQLSDGKA 683 Query: 362 TGLITYMRTDGLHVSDVAAEDIRSLVIERYGQDFASESTRKFYKKVKNAQEAHEAIRPTS 183 GLITYMRTDGLHVSD AA+DIRSLV ERYG + AS+ RK++KKVKNAQEAHEAIRPT Sbjct: 684 AGLITYMRTDGLHVSDEAAKDIRSLVAERYGSNLASDGVRKYFKKVKNAQEAHEAIRPTD 743 Query: 182 VRRLPSMLTGVLDEDSLSLYTLIWSRAMACQMVPTVIDQIQVDIGGAGSFLGLRSTCSRV 3 ++RLPSML GVLDEDSL LYTLIWSR MACQM P IDQIQVDIG A + RSTCS V Sbjct: 744 IQRLPSMLAGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNANESVVFRSTCSGV 803 >emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera] Length = 1039 Score = 670 bits (1728), Expect = 0.0 Identities = 360/553 (65%), Positives = 415/553 (75%), Gaps = 19/553 (3%) Frame = -3 Query: 1604 KPNLTKLATPTGDAKVNGSKQAFNSEKASVTKIAAQSVQASEIL-------------PAG 1464 K +T + A+ +K + + K+++TK +QS QAS++ G Sbjct: 269 KEQVTSTDASSDVAQKKSTKSSSEANKSNITK-KSQSPQASKVRHVSICIYELFQNNSTG 327 Query: 1463 DK----VDKSNLTPGNSKKTVEXXXXXXXXXXXXXVHMKPDKAPAV--LVEVKKRPLEKG 1302 +K +D S T SKK K + + +++RPL+K Sbjct: 328 NKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKK- 386 Query: 1301 LRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMV 1122 LYP +GKSVVVVES+TKAKVIQ YLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMV Sbjct: 387 ---LYPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMV 443 Query: 1121 WEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVARV 942 WEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI EML QQDALH+++ VARV Sbjct: 444 WEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARV 503 Query: 941 VFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQSAGRVQ 762 VFHEITESSIKSA+ PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQSAGRVQ Sbjct: 504 VFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 563 Query: 761 SAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKISFSSHLTHLNSKKLEQFXXX 582 SAALALICDREMEID FK Q+YWTV+VEFN+ + S+ F S+LTH +SKKL QF Sbjct: 564 SAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSIS 623 Query: 581 XXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQQDAANKLNFTAGHTMKLAQ 402 EQ++ S F+V+GSKR+K R+NPPTPYITSTLQQDAANKL+F+A +TMKLAQ Sbjct: 624 SHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQQDAANKLHFSAMYTMKLAQ 683 Query: 401 KLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIERYGQDFASESTRKFYKKVK 222 +LYEGV+LSD +A GLITYMRTDGLHVSD AA+DIRSLV ERYG + AS+ RK++KKVK Sbjct: 684 RLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAERYGSNLASDGVRKYFKKVK 743 Query: 221 NAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAMACQMVPTVIDQIQVDIGGA 42 NAQEAHEAIRPT +RRLPSML GVLDEDSL LYTLIWSR MACQM P IDQIQVDIG A Sbjct: 744 NAQEAHEAIRPTDIRRLPSMLAGVLDEDSLKLYTLIWSRTMACQMEPATIDQIQVDIGNA 803 Query: 41 GSFLGLRSTCSRV 3 + RSTCS V Sbjct: 804 NESVVFRSTCSGV 816 >ref|XP_002334451.1| predicted protein [Populus trichocarpa] gi|222872210|gb|EEF09341.1| predicted protein [Populus trichocarpa] Length = 780 Score = 648 bits (1672), Expect = 0.0 Identities = 388/742 (52%), Positives = 480/742 (64%), Gaps = 36/742 (4%) Frame = -3 Query: 2120 PIMS--QCRTLQNYSFGNSV------NYSKCSSHLKFRKAGDTCMVT---TYARFNFGSQ 1974 P+M+ QCRT QNY + NY +CS +K +K + +++ + + N GS Sbjct: 23 PLMAKLQCRTFQNYPASHLPIGTTCRNYMQCSQ-IKLKKDRLSFIISINHSQSLTNGGSM 81 Query: 1973 ECIGRRLFSVKPTKINDSNGAKAFIVRSSSSNGHVAGSV------KKSASDATTKSVQKK 1812 + IN + + S +NG+ S+ K+ S A+ S K Sbjct: 82 SM---------SSAINSHLSPGSLLNYWSFNNGNTLTSLESGVFAKRLFSTASRGSNNKN 132 Query: 1811 INVA-------KPK-DGEKEVKVEVAISTPAKGSGNIK---KTXXXXXXXXXXXXXXXKE 1665 NV KPK G K E ++ S ++ T Sbjct: 133 QNVGGFSKHWKKPKASGAAHDKDETNTNSRISASKDVDAVTSTETAVGDAKLGSAVSRTR 192 Query: 1664 LSCTTVPSGDDKISGSKQAK-KPNLTKLATPTGDAK----VNGSKQAFNSEKASVTKIAA 1500 + V + K S SK+ K + + T ++ AK + K++ S+ V A+ Sbjct: 193 NKKSKVNETEKKESKSKKNKGEASFTAVSEKAAGAKSMTTTSQLKKSLPSKSGQVAARAS 252 Query: 1499 QSVQASEILPAGDKVDKSNLTPGNS--KKTVEXXXXXXXXXXXXXVHMKPDKAPAVLVEV 1326 Q +A+E +P G +SN GNS K+T + KP K Sbjct: 253 QK-KATEEMPNGSTKQQSNKKNGNSSIKRTTKKAVNGSAEK------QKPQKIG------ 299 Query: 1325 KKRPLEKG-LRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSGSV 1149 K +P +G L+SLYP GK VVVVES+TKAKVIQ YLGDMYEVLPSYGHVRDLA RSGSV Sbjct: 300 KLQPFAQGKLKSLYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSV 359 Query: 1148 RPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDAL 969 RPDDDFS+VWEVPSAAWTHL SIKVAL+GA+ LILASDPDREGEAIAWHI EMLQQQDAL Sbjct: 360 RPDDDFSIVWEVPSAAWTHLNSIKVALSGAKILILASDPDREGEAIAWHIVEMLQQQDAL 419 Query: 968 HENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLP 789 +++ VARVVFHEITE+SIK+A+Q PR ID +LVHAYLARRALDYLIGF+ISPLLWRKLP Sbjct: 420 RQDLTVARVVFHEITETSIKNALQAPRGIDVNLVHAYLARRALDYLIGFNISPLLWRKLP 479 Query: 788 ACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKISFSSHLTHLNS 609 CQSAGRVQSAAL+L+CDREMEID F +Q+YWT+ + K E SL ++HLTH +S Sbjct: 480 GCQSAGRVQSAALSLLCDREMEIDEFNSQEYWTIGAKLKKQEQDSL----VNAHLTHFDS 535 Query: 608 KKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQQDAANKLNFT 429 KKL QF EQK+ S+ F+V+GSK++K RNPPTPYITSTLQQDAANKL+F Sbjct: 536 KKLNQFSISSDTEAKDMEQKINSADFQVVGSKKTKTHRNPPTPYITSTLQQDAANKLDFA 595 Query: 428 AGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIERYGQDFASES 249 +TMK+AQKLYEGV+LSD +ATGLITY+RTDGLH+SD A +IRSL+IERYGQDFAS+ Sbjct: 596 TSYTMKVAQKLYEGVQLSDGKATGLITYLRTDGLHISDEAVGNIRSLIIERYGQDFASKG 655 Query: 248 TRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAMACQMVPTVID 69 RK+++KVKNAQEAHEAIRPT++ LPSML GVLDEDSL LYTLIWSR +ACQM P I+ Sbjct: 656 PRKYFRKVKNAQEAHEAIRPTNIHLLPSMLVGVLDEDSLKLYTLIWSRTVACQMEPVTIE 715 Query: 68 QIQVDIGGAGSFLGLRSTCSRV 3 Q+QVDIG AG + RS+CSRV Sbjct: 716 QVQVDIGNAGKSIVFRSSCSRV 737 >ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] gi|223532629|gb|EEF34415.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] Length = 1071 Score = 645 bits (1663), Expect = 0.0 Identities = 346/555 (62%), Positives = 401/555 (72%), Gaps = 4/555 (0%) Frame = -3 Query: 1655 TTVPSGDDKISGSKQAKKPNLTKLATPTGD---AKVNGSKQAFNSEKASVTKIAAQSVQA 1485 T SGD + + PN T T +K N KQ ++ + S Sbjct: 161 TEQSSGDVNLDSTAPVTTPNSKPTPTTTRHKKHSKTNSKKQQSSTSVEEAAQAKTSSSTK 220 Query: 1484 SEILPAGDKVDKSNLTPGNSKKTVEXXXXXXXXXXXXXVHMKPDKAPAVLVEVKKRPLEK 1305 ++ P ++ P +KKT + + PDK K +P + Sbjct: 221 TKTKPKELLDASASTKPQPNKKTRKPTGKPKAIKTVK---VSPDKQQQHKPMHKSKPFRQ 277 Query: 1304 G-LRSLYPPTGKSVVVVESLTKAKVIQKYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFS 1128 G L+ LYPPT KSVVVVES+TKAKVIQ YLG M+EVLPSYGHVRDLA RSGSVRPDDDFS Sbjct: 278 GSLKPLYPPTAKSVVVVESVTKAKVIQGYLGPMFEVLPSYGHVRDLAARSGSVRPDDDFS 337 Query: 1127 MVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVA 948 MVWEVPS AWTHLK+IKVALNGAENL+LASDPDREGEAIAWHI EMLQQQDALH+ + VA Sbjct: 338 MVWEVPSPAWTHLKTIKVALNGAENLVLASDPDREGEAIAWHIIEMLQQQDALHQGVTVA 397 Query: 947 RVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQSAGR 768 RVVFHEITE SIK+A+Q PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQSAGR Sbjct: 398 RVVFHEITEQSIKNALQAPREIDLNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGR 457 Query: 767 VQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKISFSSHLTHLNSKKLEQFX 588 VQSAAL+LICDREMEID F Q+YWT+DVE +E GS S ++ LTH + KL Q Sbjct: 458 VQSAALSLICDREMEIDEFTPQEYWTIDVELYIMETGS----SVNARLTHFDFNKLNQLS 513 Query: 587 XXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQQDAANKLNFTAGHTMKL 408 EQK+ +SF V G+K SK RRNPPTPYITSTLQQDAANKL+F++ +TMKL Sbjct: 514 VRSHTEARDIEQKINVASFLVAGAKESKMRRNPPTPYITSTLQQDAANKLHFSSMYTMKL 573 Query: 407 AQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIERYGQDFASESTRKFYKK 228 AQKLYEGV+LSD + TGLITY+RTDGLH+S A ++I SLVIERYGQDFAS+S RK++KK Sbjct: 574 AQKLYEGVQLSDGKTTGLITYIRTDGLHISGEAVKEIHSLVIERYGQDFASDSPRKYFKK 633 Query: 227 VKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAMACQMVPTVIDQIQVDIG 48 VKNAQEAHEA+RPT+VR LPSML VLDEDSL LYTLIWSR +ACQM P I+QIQVDIG Sbjct: 634 VKNAQEAHEAVRPTNVRMLPSMLANVLDEDSLKLYTLIWSRTVACQMEPATIEQIQVDIG 693 Query: 47 GAGSFLGLRSTCSRV 3 A + LRS CS V Sbjct: 694 NANGSITLRSACSGV 708 >ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max] Length = 1197 Score = 641 bits (1654), Expect = 0.0 Identities = 369/702 (52%), Positives = 449/702 (63%), Gaps = 17/702 (2%) Frame = -3 Query: 2057 KCSSHLKF-RKAGDTCMVTTYARFNF----GSQECIGRRLFSVKPTKINDSNGAKAFIVR 1893 +C + L F R+ C T+++ F F S G +FS + F R Sbjct: 167 QCRTRLLFPRRVTAKCHATSFSNFRFPFALNSTTSFGGSVFS------------RGFATR 214 Query: 1892 SSSSNGHVAGSVKKSASDATTKSVQKK---INVAKPKDGEKEVKVEVAISTPAKGSGNIK 1722 ++ + G KK A A + +K IN A PK+ + T ++GS K Sbjct: 215 AAEN-----GKQKKRARAAVVRGKEKDEGVINDAAPKEFDNV--------TASEGSLGEK 261 Query: 1721 KTXXXXXXXXXXXXXXXKELSCTTVPSG--DDKISGSKQAKKPNLTKL-------ATPTG 1569 K S SG D+K K AKK T L ++ Sbjct: 262 KKNKKG--------------SSPVAASGKEDEKSVKKKTAKKKTTTTLRSKKVAASSTQE 307 Query: 1568 DAKVNGSKQAFNSEKASVTKIAAQSVQASEILPAGDKVDKSNLTPGNSKKTVEXXXXXXX 1389 D SK+++ +K +K +V + L + P NS + Sbjct: 308 DGAAEASKKSYKGKKKKDSKNDTNTVVIQKSLTESAIEEM----PENSASAKD------- 356 Query: 1388 XXXXXXVHMKPDKAPAVLVEVKKRPLEKGLRSLYPPTGKSVVVVESLTKAKVIQKYLGDM 1209 +K + ++E K P + LYPPT KSVVVVES+TKAKVI++YLGDM Sbjct: 357 -------ELKKKNGNSSVIEEVKPPWNFTYKPLYPPTRKSVVVVESVTKAKVIKRYLGDM 409 Query: 1208 YEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPD 1029 YEVLPSYGHVRDLA RSGSVRPDDDFSMVWEVP AWTHLKSIKVAL+ AENLILASDPD Sbjct: 410 YEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPD 469 Query: 1028 REGEAIAWHITEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLAR 849 REGEAIAWHI EMLQQQ ALH+NI++ARVVFHEITE SIK A+Q PR+ID +LV AYLAR Sbjct: 470 REGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLAR 529 Query: 848 RALDYLIGFSISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNK 669 RALDYLIGF+ISPLLWRKLP CQSAGRVQSAAL+LICDREMEID FK ++YWTV+V+ K Sbjct: 530 RALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKK 589 Query: 668 LEPGSLGKISFSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNP 489 E S ++F +HLTH +SKKL +F + S+ F V+ K++K+RRNP Sbjct: 590 KELRSNKNLTFPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNP 649 Query: 488 PTPYITSTLQQDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVA 309 PTPYITSTLQQDAANKL+FTA HTMKLAQKLYEGV+LSD A GLITY+RTDGLH+SD A Sbjct: 650 PTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEA 709 Query: 308 AEDIRSLVIERYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLS 129 IRSL+IERYGQDF S+S K+YKKVKNAQEAHEAIRPT +R+LPSML+ +LDE+SL Sbjct: 710 VASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLK 769 Query: 128 LYTLIWSRAMACQMVPTVIDQIQVDIGGAGSFLGLRSTCSRV 3 LYTLIWSR ++CQM P V +QIQ+DIG + L+S+ SRV Sbjct: 770 LYTLIWSRTVSCQMEPAVFEQIQLDIGNLDESIILQSSISRV 811