BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002997
         (1700 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...   268   3e-69
ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...   268   3e-69
dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]    268   3e-69
dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar...   268   3e-69
ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypep...   268   3e-69

>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis
            sativus] gi|449518487|ref|XP_004166273.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB7-like [Cucumis
            sativus]
          Length = 176

 Score =  268 bits (686), Expect = 3e-69
 Identities = 130/135 (96%), Positives = 135/135 (100%)
 Frame = -3

Query: 1680 SGRHGFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 1501
            SGRHGFVVAITG+++IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF
Sbjct: 39   SGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 98

Query: 1500 AEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 1321
            AEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFC
Sbjct: 99   AEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC 158

Query: 1320 IGTIKDDFLGVINDP 1276
            IGTIKDDFLGVINDP
Sbjct: 159  IGTIKDDFLGVINDP 173


>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
            [Brachypodium distachyon]
          Length = 177

 Score =  268 bits (686), Expect = 3e-69
 Identities = 131/136 (96%), Positives = 135/136 (99%)
 Frame = -3

Query: 1680 SGRHGFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 1501
            SGRHGFVVAITGV+ IGKGLIR+GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF
Sbjct: 39   SGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 98

Query: 1500 AEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 1321
            AEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC
Sbjct: 99   AEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 158

Query: 1320 IGTIKDDFLGVINDPG 1273
            IGTIKDDFLGVI+DPG
Sbjct: 159  IGTIKDDFLGVISDPG 174


>dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 236

 Score =  268 bits (686), Expect = 3e-69
 Identities = 131/136 (96%), Positives = 135/136 (99%)
 Frame = -3

Query: 1680 SGRHGFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 1501
            SGRHGFVVAITGV+ IGKGLIR+GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF
Sbjct: 98   SGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 157

Query: 1500 AEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 1321
            AEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC
Sbjct: 158  AEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 217

Query: 1320 IGTIKDDFLGVINDPG 1273
            IGTIKDDFLGVI+DPG
Sbjct: 218  IGTIKDDFLGVISDPG 233


>dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 177

 Score =  268 bits (686), Expect = 3e-69
 Identities = 131/136 (96%), Positives = 135/136 (99%)
 Frame = -3

Query: 1680 SGRHGFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 1501
            SGRHGFVVAITGV+ IGKGLIR+GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF
Sbjct: 39   SGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 98

Query: 1500 AEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 1321
            AEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC
Sbjct: 99   AEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 158

Query: 1320 IGTIKDDFLGVINDPG 1273
            IGTIKDDFLGVI+DPG
Sbjct: 159  IGTIKDDFLGVISDPG 174


>ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
            [Ricinus communis] gi|223540340|gb|EEF41911.1|
            DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
            putative [Ricinus communis]
          Length = 176

 Score =  268 bits (686), Expect = 3e-69
 Identities = 130/135 (96%), Positives = 135/135 (100%)
 Frame = -3

Query: 1680 SGRHGFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 1501
            SGRHGFVVAITG++S+GKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF
Sbjct: 39   SGRHGFVVAITGIESVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFF 98

Query: 1500 AEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFC 1321
            AEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFC
Sbjct: 99   AEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFC 158

Query: 1320 IGTIKDDFLGVINDP 1276
            IGTIKDDFLGVINDP
Sbjct: 159  IGTIKDDFLGVINDP 173