BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002994
         (3349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280664.2| PREDICTED: ATP-dependent DNA helicase recG-l...  1004   0.0  
emb|CBI26906.3| unnamed protein product [Vitis vinifera]             1004   0.0  
ref|XP_002526020.1| conserved hypothetical protein [Ricinus comm...   977   0.0  
ref|XP_002314808.1| predicted protein [Populus trichocarpa] gi|2...   971   0.0  
ref|NP_178253.3| ATP-dependent DNA helicase RecG [Arabidopsis th...   927   0.0  

>ref|XP_002280664.2| PREDICTED: ATP-dependent DNA helicase recG-like [Vitis vinifera]
          Length = 1036

 Score = 1004 bits (2596), Expect(2) = 0.0
 Identities = 509/694 (73%), Positives = 580/694 (83%), Gaps = 1/694 (0%)
 Frame = -3

Query: 2339 RGIRASSSFSFLEVVVACDIANDLAASECKNDQYATEAKKKIYLHLKKFFRGARFTNTYF 2160
            RG++AS SFSFLEVVV C+IA+  +  E       +  KK IYLHLKKFFRG RFTN  F
Sbjct: 343  RGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKFFRGTRFTNVPF 402

Query: 2159 LKSIQSKHKEGDYVCVSGKVKAMSKEDHYEMREYNVDAIEDEKESSLHRERRPYPLYPSK 1980
            L+ +Q KHKEGD VCVSGKV+ M  +DHYEMREYN+D IED+++SS+  + RPY +YPSK
Sbjct: 403  LRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCPKGRPYSIYPSK 462

Query: 1979 GGVKPDFFRAMISRALEVLSIDIDPVPQDIREEFDLLSLHDAYMVIHHPKNLGEADLARK 1800
            GG+  +F R +ISRAL  L ++IDP+P+DI E+F LLSLH AY+ IH PK+L EADLARK
Sbjct: 463  GGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQPKDLKEADLARK 522

Query: 1799 RLLFDEFFYLQLGRLFQMLESLGNRVEREGLLDSYRNSNLNGALIEDWCALTHKLLKVLP 1620
            RL+FDEFFYLQLGRLFQ+LE LG ++E++GLLD YR   LN   +E+W +LT   LK LP
Sbjct: 523  RLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALP 582

Query: 1619 YSLTSSQLKAVSEIIWDLKQPVPMYRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 1440
            YSLTSSQL A SEIIWDLK+PVPM RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT
Sbjct: 583  YSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 642

Query: 1439 ELLAVQHYEHLLNLLNNIEDP-CKPSIALLTGSTPAKQSRIVRKGLQDGDISLVIGTHSL 1263
            ELLA+QHYE L+NLL N+E   CKPSIALLTGSTP+KQSR+  KGLQ+GDISLVIGTHSL
Sbjct: 643  ELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSL 702

Query: 1262 IAEKIEFSALRISVIDEQHRFGVIQRGKFNSKLYSSITSLRKNPEGTEGSLKDDVFMAPH 1083
            I+EK+EFSALRI+V+DEQHRFGVIQRG+FNSKLY +  S R     ++   + D  MAPH
Sbjct: 703  ISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPH 762

Query: 1082 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETYIFEGTHAGNESVYQMMREELI 903
            +LAMSATPIPRTLALALYGDMSLTQITDLPPGR PVETY  EG  AG E VYQMM +EL 
Sbjct: 763  ILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELE 822

Query: 902  SGGKVYIVYPIIEASEQLPQLRAASSDLETISETFDGYQCGLLHGRMKSDEKDEALRRFR 723
             GGK+YIVYP+IE SEQLPQLRAAS+DLETIS  F GY+CGLLHGRMKSDEKDEALRRFR
Sbjct: 823  VGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFR 882

Query: 722  SGETNILLSTQVVEIGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSKCVFLASS 543
            SGETNILLSTQV+EIGVD+PDASMMVVMNAERFGIAQLHQLRGRVGRGV+KSKC+ ++S+
Sbjct: 883  SGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSST 942

Query: 542  ASGLNRLKVLEKSSDGFYLAXXXXXXXXXXXXXXXKQSGHIPEFPIARLEIDGNMLEEAH 363
            ASGLNRLKVLE SSDGFYLA               KQSGH+PEFPIARLEIDGN+L+EAH
Sbjct: 943  ASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAH 1002

Query: 362  RAALKILGTSHDLQRFPKLKAELSMRQPLCLLGD 261
             AALKILGTSHDL++FP+LKAELSMRQPLCLLGD
Sbjct: 1003 LAALKILGTSHDLEQFPELKAELSMRQPLCLLGD 1036



 Score =  258 bits (659), Expect(2) = 0.0
 Identities = 152/314 (48%), Positives = 197/314 (62%), Gaps = 11/314 (3%)
 Frame = -2

Query: 3318 CCNEKNLKSA------KGYLNAVGRNMRFSTFLQSKLLKLCSRSNKNCAHKLLEEVNGYG 3157
            CC+EK L+ A      +GY NA+GR MRFS FL SK+ KLCSRS      KLL+EV+ YG
Sbjct: 45   CCSEKPLRIAIAFEAERGYQNALGRKMRFSNFLLSKISKLCSRSKHKFPEKLLDEVDSYG 104

Query: 3156 KASVSDRSKLLNKVSVLLGYKSVQDLVENESGQKLSGANFKDILNELEVSLACERFSSII 2977
            KAS+SDRSKLLNKVSVL+GY S+ DL+ENE  QK S  N KD +N +++SLAC +F SII
Sbjct: 105  KASISDRSKLLNKVSVLMGYDSLHDLIENERVQKESDMNLKDEINNVDISLACRKFPSII 164

Query: 2976 MGSSSPILLFDELACKSEGINHMIDQNCHICLPSSIGGEMFD-VERMTE--PSLDFPVAV 2806
            +G+S P+ L+DE  C S+  + +  Q C   L SS G E +D  +R +E  PSL      
Sbjct: 165  LGNSPPVELYDENKCHSDVRSLLAAQICEEFLSSS-GAEKWDGPDRFSETWPSL------ 217

Query: 2805 DSSLLKELDSPVVEDL--CLLEEKSSDVLPISLQSVPLQTERKPVSYDIAEKPTFTLPSE 2632
                      P + ++   LL ++SS  LP+S Q + ++T+ K       E P   +  E
Sbjct: 218  ---------CPTLPNINASLLRKESSSTLPVSSQPLTMETKEKSDVLVTVEGPPANMVLE 268

Query: 2631 SEQKIISIELILDKPLSSIPGMSSKQCCQLEKCDIHTLRQLLHHFPRTYADLQNAHGEIV 2452
            S+     +ELILDK +S IPG+  + C QLE C  HTLR+LL HFPRTYADL+NA   I 
Sbjct: 269  SQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFHTLRKLLQHFPRTYADLKNALIGID 328

Query: 2451 DGNYMISFGRILSS 2410
            DG YMIS G+ILSS
Sbjct: 329  DGQYMISIGKILSS 342


>emb|CBI26906.3| unnamed protein product [Vitis vinifera]
          Length = 988

 Score = 1004 bits (2596), Expect(2) = 0.0
 Identities = 509/694 (73%), Positives = 580/694 (83%), Gaps = 1/694 (0%)
 Frame = -3

Query: 2339 RGIRASSSFSFLEVVVACDIANDLAASECKNDQYATEAKKKIYLHLKKFFRGARFTNTYF 2160
            RG++AS SFSFLEVVV C+IA+  +  E       +  KK IYLHLKKFFRG RFTN  F
Sbjct: 295  RGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKFFRGTRFTNVPF 354

Query: 2159 LKSIQSKHKEGDYVCVSGKVKAMSKEDHYEMREYNVDAIEDEKESSLHRERRPYPLYPSK 1980
            L+ +Q KHKEGD VCVSGKV+ M  +DHYEMREYN+D IED+++SS+  + RPY +YPSK
Sbjct: 355  LRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCPKGRPYSIYPSK 414

Query: 1979 GGVKPDFFRAMISRALEVLSIDIDPVPQDIREEFDLLSLHDAYMVIHHPKNLGEADLARK 1800
            GG+  +F R +ISRAL  L ++IDP+P+DI E+F LLSLH AY+ IH PK+L EADLARK
Sbjct: 415  GGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQPKDLKEADLARK 474

Query: 1799 RLLFDEFFYLQLGRLFQMLESLGNRVEREGLLDSYRNSNLNGALIEDWCALTHKLLKVLP 1620
            RL+FDEFFYLQLGRLFQ+LE LG ++E++GLLD YR   LN   +E+W +LT   LK LP
Sbjct: 475  RLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALP 534

Query: 1619 YSLTSSQLKAVSEIIWDLKQPVPMYRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 1440
            YSLTSSQL A SEIIWDLK+PVPM RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT
Sbjct: 535  YSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 594

Query: 1439 ELLAVQHYEHLLNLLNNIEDP-CKPSIALLTGSTPAKQSRIVRKGLQDGDISLVIGTHSL 1263
            ELLA+QHYE L+NLL N+E   CKPSIALLTGSTP+KQSR+  KGLQ+GDISLVIGTHSL
Sbjct: 595  ELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSL 654

Query: 1262 IAEKIEFSALRISVIDEQHRFGVIQRGKFNSKLYSSITSLRKNPEGTEGSLKDDVFMAPH 1083
            I+EK+EFSALRI+V+DEQHRFGVIQRG+FNSKLY +  S R     ++   + D  MAPH
Sbjct: 655  ISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPH 714

Query: 1082 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETYIFEGTHAGNESVYQMMREELI 903
            +LAMSATPIPRTLALALYGDMSLTQITDLPPGR PVETY  EG  AG E VYQMM +EL 
Sbjct: 715  ILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELE 774

Query: 902  SGGKVYIVYPIIEASEQLPQLRAASSDLETISETFDGYQCGLLHGRMKSDEKDEALRRFR 723
             GGK+YIVYP+IE SEQLPQLRAAS+DLETIS  F GY+CGLLHGRMKSDEKDEALRRFR
Sbjct: 775  VGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFR 834

Query: 722  SGETNILLSTQVVEIGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSKCVFLASS 543
            SGETNILLSTQV+EIGVD+PDASMMVVMNAERFGIAQLHQLRGRVGRGV+KSKC+ ++S+
Sbjct: 835  SGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSST 894

Query: 542  ASGLNRLKVLEKSSDGFYLAXXXXXXXXXXXXXXXKQSGHIPEFPIARLEIDGNMLEEAH 363
            ASGLNRLKVLE SSDGFYLA               KQSGH+PEFPIARLEIDGN+L+EAH
Sbjct: 895  ASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAH 954

Query: 362  RAALKILGTSHDLQRFPKLKAELSMRQPLCLLGD 261
             AALKILGTSHDL++FP+LKAELSMRQPLCLLGD
Sbjct: 955  LAALKILGTSHDLEQFPELKAELSMRQPLCLLGD 988



 Score =  244 bits (624), Expect(2) = 0.0
 Identities = 152/316 (48%), Positives = 191/316 (60%), Gaps = 7/316 (2%)
 Frame = -2

Query: 3336 VNSHYLCCNEKNLKSA------KGYLNAVGRNMRFSTFLQSKLLKLCSRSNKNCAHKLLE 3175
            V S  +CC+EK L+ A      +GY NA+GR MRFS FL SK+ KLCSRS      KLL+
Sbjct: 8    VRSCGMCCSEKPLRIAIAFEAERGYQNALGRKMRFSNFLLSKISKLCSRSKHKFPEKLLD 67

Query: 3174 EVNGYGKASVSDRSKLLNKVSVLLGYKSVQDLVENESGQKLSGANFKDILNELEVSLACE 2995
            EV+ YGKAS+SDRSKLLNKVSVL+GY S+ DL+ENE  QK S  N KD +N +++SLAC 
Sbjct: 68   EVDSYGKASISDRSKLLNKVSVLMGYDSLHDLIENERVQKESDMNLKDEINNVDISLACR 127

Query: 2994 RFSSIIMGSSSPILLFDELACKSEGINHMIDQNCHICLPSSIGGEMFD-VERMTEPSLDF 2818
            +F SII+G+S P+ L+DE  C S+  + +  Q C   L SS G E +D  +R +E    +
Sbjct: 128  KFPSIILGNSPPVELYDENKCHSDVRSLLAAQICEEFLSSS-GAEKWDGPDRFSE---TW 183

Query: 2817 PVAVDSSLLKELDSPVVEDLCLLEEKSSDVLPISLQSVPLQTERKPVSYDIAEKPTFTLP 2638
            P     SL   L  P +    L +EK SDVL                     E P   + 
Sbjct: 184  P-----SLCPTL--PNINASLLRKEKKSDVLV------------------TVEGPPANMV 218

Query: 2637 SESEQKIISIELILDKPLSSIPGMSSKQCCQLEKCDIHTLRQLLHHFPRTYADLQNAHGE 2458
             ES+     +ELILDK +S IPG+  + C QLE C  HTLR+LL HFPRTYADL+NA   
Sbjct: 219  LESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFHTLRKLLQHFPRTYADLKNALIG 278

Query: 2457 IVDGNYMISFGRILSS 2410
            I DG YMIS G+ILSS
Sbjct: 279  IDDGQYMISIGKILSS 294


>ref|XP_002526020.1| conserved hypothetical protein [Ricinus communis]
            gi|223534667|gb|EEF36360.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 983

 Score =  977 bits (2526), Expect(2) = 0.0
 Identities = 498/698 (71%), Positives = 576/698 (82%), Gaps = 5/698 (0%)
 Frame = -3

Query: 2339 RGIRASSSFSFLEVVVACDIANDLAASECKNDQYATEA--KKKIYLHLKKFFRGARFTNT 2166
            RG+RAS SFSFLEVVV C++A D    E +++   T++   + IYLHLKKFFRG RFTN 
Sbjct: 292  RGVRASYSFSFLEVVVGCEVAID----ESQHNTIDTDSGETRTIYLHLKKFFRGVRFTNQ 347

Query: 2165 YFLKSIQSKHKEGDYVCVSGKVKAMSKEDHYEMREYNVDAIEDEKESSLHRERRPYPLYP 1986
             FLKS+ +KHK GD VC+SGKVK MS +DHYEMREYN+D ++D+  SSLH E RPYP+YP
Sbjct: 348  PFLKSLANKHKLGDVVCISGKVKTMSTKDHYEMREYNIDVLKDDDVSSLHPEGRPYPIYP 407

Query: 1985 SKGGVKPDFFRAMISRALEVLSIDIDPVPQDIREEFDLLSLHDAYMVIHHPKNLGEADLA 1806
            SKGG+ PDF R +I+RAL+ L   IDP+P++I ++F LL LHDAY  IH P+N+ EAD A
Sbjct: 408  SKGGLNPDFLRDIIARALQALGPGIDPIPKEIIQDFRLLHLHDAYTGIHQPRNVEEADSA 467

Query: 1805 RKRLLFDEFFYLQLGRLFQMLESLGNRVEREGLLDSYRNSNLNGALIEDWCALTHKLLKV 1626
            R+RL+FDEFFYLQLGRLFQMLE L  R E++GLL  YR   LN   +E+W +LT K LK 
Sbjct: 468  RRRLIFDEFFYLQLGRLFQMLEGLSTRTEKDGLLLKYRKPELNALYVENWSSLTKKFLKA 527

Query: 1625 LPYSLTSSQLKAVSEIIWDLKQPVPMYRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 1446
            LPYSLTSSQL AVSEIIWDLK+PVPM RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV
Sbjct: 528  LPYSLTSSQLNAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 587

Query: 1445 PTELLAVQHYEHLLNLLNNIED-PCKPSIALLTGSTPAKQSRIVRKGLQDGDISLVIGTH 1269
            PTELLA+QHYEHLL LL  +E+   KPSIALLTGSTP KQSR++RK LQ GDIS+VIGTH
Sbjct: 588  PTELLAIQHYEHLLKLLETMEENQSKPSIALLTGSTPLKQSRMIRKDLQSGDISMVIGTH 647

Query: 1268 SLIAEKIEFSALRISVIDEQHRFGVIQRGKFNSKLYSSITSLRKNPEGTE--GSLKDDVF 1095
            SLI+E +EFSALRI+V+DEQHRFGVIQRG+FNSKLY   TSLR     T   GS K DV+
Sbjct: 648  SLISENVEFSALRIAVVDEQHRFGVIQRGQFNSKLY--YTSLRSRMAVTTSIGSSKGDVY 705

Query: 1094 MAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETYIFEGTHAGNESVYQMMR 915
            MAPH+LAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVET+I EG   G E +Y+M+ 
Sbjct: 706  MAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETHIIEGNSQGFEDIYKMIL 765

Query: 914  EELISGGKVYIVYPIIEASEQLPQLRAASSDLETISETFDGYQCGLLHGRMKSDEKDEAL 735
            +EL +GG+VY+VYP+IE SEQLPQLRAAS+DL+ IS+ F  + CGLLHGRMKSDEKDEAL
Sbjct: 766  DELEAGGRVYLVYPVIEQSEQLPQLRAASADLQAISDRFQRFNCGLLHGRMKSDEKDEAL 825

Query: 734  RRFRSGETNILLSTQVVEIGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSKCVF 555
            RRFRSGET ILLSTQV+E+GVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG +KSKC+ 
Sbjct: 826  RRFRSGETQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGERKSKCIL 885

Query: 554  LASSASGLNRLKVLEKSSDGFYLAXXXXXXXXXXXXXXXKQSGHIPEFPIARLEIDGNML 375
            L S++S LNRLKVLEKSSDGF+LA               KQSGH+P+FPIARLEI G +L
Sbjct: 886  LGSTSSSLNRLKVLEKSSDGFHLANADLLLRGPGDLLGKKQSGHLPDFPIARLEIVGKIL 945

Query: 374  EEAHRAALKILGTSHDLQRFPKLKAELSMRQPLCLLGD 261
            +EAH AALK+LG SHDL+RFP+LKAELSMRQPLCLLGD
Sbjct: 946  QEAHDAALKVLGDSHDLERFPELKAELSMRQPLCLLGD 983



 Score =  166 bits (421), Expect(2) = 0.0
 Identities = 113/297 (38%), Positives = 159/297 (53%), Gaps = 14/297 (4%)
 Frame = -2

Query: 3258 MRFSTFLQSKLLKLCSRSNKNCAHKLLEEVNGYGKASVSDRSKLLNKVSVLLGYKSVQDL 3079
            MRF   L + + +L  R   N A KLL++   Y   SVSDRSKLLNKV+ L+ Y    DL
Sbjct: 1    MRFCHSLLN-ISRLHIRFKHNFAEKLLDQAYKYDMPSVSDRSKLLNKVTALVDYDGFHDL 59

Query: 3078 VENESGQKLSGANFKDILNELEVSLACERFSSIIMGSSSPILLFDELACKSEGINHMIDQ 2899
            +EN    + SG + KD  ++ +VSLAC+RF SI +GSS P+ L+DE     E    +  +
Sbjct: 60   IENGKAGEQSGQDLKDATDDFDVSLACKRFPSITLGSSPPVELYDETTKPLEMKTLLAAE 119

Query: 2898 NCHICLPSSIGGEMFDVERMTE--------PSLDFPV---AVDSSLLKELDSPVVEDLCL 2752
            +    +  ++G +  D +   E        PS ++ +     D S     +S   +   L
Sbjct: 120  SYKEFVSDALGMKWVDSDGFYEQWTSADAVPSENYSIPKAEKDESACMTTESREEKTYLL 179

Query: 2751 LEEKSSDVLPISLQSVPLQTERKPVSYDIAEKPTFTLPSESEQKI---ISIELILDKPLS 2581
             E K   V  +S+ S  +  E K    +I     F++   S +K+   +     LD P+S
Sbjct: 180  EELKEESVNSLSVHSEDVTAETKEKIDNI-----FSMQETSNKKVGESLLSAAFLDTPVS 234

Query: 2580 SIPGMSSKQCCQLEKCDIHTLRQLLHHFPRTYADLQNAHGEIVDGNYMISFGRILSS 2410
             IPG+S +Q  QLE C  HTLR+LLHHFPRTYADLQNA   + DG Y+IS G+ILSS
Sbjct: 235  CIPGLSKRQHHQLENCGFHTLRKLLHHFPRTYADLQNALVGVDDGQYLISVGKILSS 291


>ref|XP_002314808.1| predicted protein [Populus trichocarpa] gi|222863848|gb|EEF00979.1|
            predicted protein [Populus trichocarpa]
          Length = 888

 Score =  971 bits (2509), Expect(2) = 0.0
 Identities = 490/695 (70%), Positives = 571/695 (82%), Gaps = 2/695 (0%)
 Frame = -3

Query: 2339 RGIRASSSFSFLEVVVACDIANDLAASECKNDQYATEAKKKIYLHLKKFFRGARFTNTYF 2160
            R ++AS S +F EV+VAC+I N+   S+   D   +  KK IYLHLKK+FRG RFT   F
Sbjct: 196  RAVKASYSLAFAEVIVACEIINN--ESKHLIDDNNSGGKKTIYLHLKKYFRGTRFTCLPF 253

Query: 2159 LKSIQSKHKEGDYVCVSGKVKAMS-KEDHYEMREYNVDAIEDEKESSLHRERRPYPLYPS 1983
            LK +++KHK GD VCVSGKV+ MS K DHYE+REYN+D +ED ++SS   E RPYP+YPS
Sbjct: 254  LKKVEAKHKLGDVVCVSGKVRTMSTKGDHYEIREYNIDVLEDREDSSSIVEGRPYPIYPS 313

Query: 1982 KGGVKPDFFRAMISRALEVLSIDIDPVPQDIREEFDLLSLHDAYMVIHHPKNLGEADLAR 1803
            KGG+ PDF R  ISRA+  L  D+DP+P++I ++F LL LH+AY+ IH PKN  EADLAR
Sbjct: 314  KGGLNPDFLRDTISRAVRALLADVDPIPKEIIQDFGLLRLHEAYIGIHQPKNADEADLAR 373

Query: 1802 KRLLFDEFFYLQLGRLFQMLESLGNRVEREGLLDSYRNSNLNGALIEDWCALTHKLLKVL 1623
            KRL+FDEFFYLQLGRLFQMLE LG+R+E++GLLD Y    LN   +E+W  LT K LK L
Sbjct: 374  KRLIFDEFFYLQLGRLFQMLEGLGSRMEKDGLLDKYSKPELNAVYVEEWSNLTKKFLKAL 433

Query: 1622 PYSLTSSQLKAVSEIIWDLKQPVPMYRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 1443
            PYSLTSSQL A S+IIWDLK+PVPM RLLQGDVGCGKT+VAFLACMEVIGSGYQAAFMVP
Sbjct: 434  PYSLTSSQLSASSQIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVP 493

Query: 1442 TELLAVQHYEHLLNLLNNI-EDPCKPSIALLTGSTPAKQSRIVRKGLQDGDISLVIGTHS 1266
            TELLA+QHYE LLNLL  + E   KPS+ALLTGSTP+KQSR++R+ LQ GDIS+VIGTHS
Sbjct: 494  TELLAIQHYEQLLNLLETMGEVQSKPSVALLTGSTPSKQSRMIRRDLQSGDISMVIGTHS 553

Query: 1265 LIAEKIEFSALRISVIDEQHRFGVIQRGKFNSKLYSSITSLRKNPEGTEGSLKDDVFMAP 1086
            LI+E +EFSALRI+V+DEQ RFGVIQRG+FNSKLY S  S R +   T+ S + D  MAP
Sbjct: 554  LISENVEFSALRIAVVDEQQRFGVIQRGRFNSKLYHSPLSSRMSASNTDTSSEGDFHMAP 613

Query: 1085 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETYIFEGTHAGNESVYQMMREEL 906
            HVLAMSATPIPRTLALALYGDMSLTQITDLPPGR+PVETYIFEG + G E VY+MMR+EL
Sbjct: 614  HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRVPVETYIFEGNYDGFEDVYKMMRDEL 673

Query: 905  ISGGKVYIVYPIIEASEQLPQLRAASSDLETISETFDGYQCGLLHGRMKSDEKDEALRRF 726
             +GG+VY+VYP+IE SEQLPQLRAA++DLE IS  F  Y CGLLHG+MKSD+KDEAL+RF
Sbjct: 674  EAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGLLHGKMKSDDKDEALKRF 733

Query: 725  RSGETNILLSTQVVEIGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSKCVFLAS 546
            RSG T+ILLSTQV+EIGVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG +KSKC+ +AS
Sbjct: 734  RSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGARKSKCLLVAS 793

Query: 545  SASGLNRLKVLEKSSDGFYLAXXXXXXXXXXXXXXXKQSGHIPEFPIARLEIDGNMLEEA 366
            + S L+RLKVLEKSSDGFYLA               KQSGH+PEFPIARLEIDGN+L+EA
Sbjct: 794  TTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEA 853

Query: 365  HRAALKILGTSHDLQRFPKLKAELSMRQPLCLLGD 261
            H AALK+LG SHDL+RFP LKAELSMRQPLCLLGD
Sbjct: 854  HAAALKVLGESHDLERFPALKAELSMRQPLCLLGD 888



 Score =  130 bits (326), Expect(2) = 0.0
 Identities = 85/232 (36%), Positives = 124/232 (53%)
 Frame = -2

Query: 3105 LGYKSVQDLVENESGQKLSGANFKDILNELEVSLACERFSSIIMGSSSPILLFDELACKS 2926
            + Y    DL+ENE+  K    N KD  ++ +VSLAC+RF SI++GSS P+ L+DE    S
Sbjct: 1    MDYDGFHDLIENETAAKQFRGNAKDDTDDFDVSLACKRFPSIVLGSSPPVELYDESEINS 60

Query: 2925 EGINHMIDQNCHICLPSSIGGEMFDVERMTEPSLDFPVAVDSSLLKELDSPVVEDLCLLE 2746
                 +++      LP+++G +  D + + E               +L SP  E++    
Sbjct: 61   LLAAKILEG----FLPNAMGVKCVDPDTLHE---------------QLTSPHTENVN--- 98

Query: 2745 EKSSDVLPISLQSVPLQTERKPVSYDIAEKPTFTLPSESEQKIISIELILDKPLSSIPGM 2566
                        S+P +   K VS    E+ T  +  ES+  +      LDKP+S +PG+
Sbjct: 99   -----------SSMPKELREKIVSKIGMEEYTTKVELESQVNLA----YLDKPISCLPGL 143

Query: 2565 SSKQCCQLEKCDIHTLRQLLHHFPRTYADLQNAHGEIVDGNYMISFGRILSS 2410
            S++Q  QLE C  +TLR+LL HFPRTYADLQNAH  I DG Y+IS G++ SS
Sbjct: 144  STRQRRQLENCGFYTLRKLLQHFPRTYADLQNAHFGIDDGQYLISVGKVTSS 195


>ref|NP_178253.3| ATP-dependent DNA helicase RecG [Arabidopsis thaliana]
            gi|330250357|gb|AEC05451.1| ATP-dependent DNA helicase
            RecG [Arabidopsis thaliana]
          Length = 973

 Score =  927 bits (2396), Expect(2) = 0.0
 Identities = 466/694 (67%), Positives = 555/694 (79%), Gaps = 1/694 (0%)
 Frame = -3

Query: 2339 RGIRASSSFSFLEVVVACDIANDLAASECKNDQYATEAKKKIYLHLKKFFRGARFTNTYF 2160
            +G+RASSSFSFLEV+V+C+++      E  +     +A K I+LHLKKFFRG RFT   F
Sbjct: 280  KGVRASSSFSFLEVIVSCEVSGRDRTPEDLSHNAEDKAGKSIFLHLKKFFRGTRFTWQPF 339

Query: 2159 LKSIQSKHKEGDYVCVSGKVKAMSKEDHYEMREYNVDAIEDEKESSLHRERRPYPLYPSK 1980
            L SIQ KHK GD VC+SGKVK++  EDH+EMREYN+D ++DE+ESS   + RPYP+YPSK
Sbjct: 340  LNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHRAQGRPYPIYPSK 399

Query: 1979 GGVKPDFFRAMISRALEVLSIDIDPVPQDIREEFDLLSLHDAYMVIHHPKNLGEADLARK 1800
            GG+ P F   +ISRAL VL  ++DP+P++I + F L SL+DAY+ IH PK L EADLARK
Sbjct: 400  GGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPSLNDAYVGIHEPKTLDEADLARK 459

Query: 1799 RLLFDEFFYLQLGRLFQMLESLGNRVEREGLLDSYRNSNLNGALIEDWCALTHKLLKVLP 1620
            RL+FDEFFYLQL RL+QML+SLG ++E++ LL+ +R   LN   IE+W  LT   LK LP
Sbjct: 460  RLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLNSVYIEEWSTLTKSFLKALP 519

Query: 1619 YSLTSSQLKAVSEIIWDLKQPVPMYRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 1440
            YSLT SQL AVSEIIWDLK+PVPM RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM PT
Sbjct: 520  YSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMAPT 579

Query: 1439 ELLAVQHYEHLLNLLNNIED-PCKPSIALLTGSTPAKQSRIVRKGLQDGDISLVIGTHSL 1263
            ELLA+QHYE   +LL N+E    KP+I LLTGSTPAKQSR++R+ LQ G IS +IGTHSL
Sbjct: 580  ELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQDLQSGAISFIIGTHSL 639

Query: 1262 IAEKIEFSALRISVIDEQHRFGVIQRGKFNSKLYSSITSLRKNPEGTEGSLKDDVFMAPH 1083
            IAEKIE+SALRI+V+DEQ RFGVIQRGKFNSKLY +    +     ++ + K D+ MAPH
Sbjct: 640  IAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSDSDDTSKADLSMAPH 699

Query: 1082 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETYIFEGTHAGNESVYQMMREELI 903
            VLAMSATPIPR+LALALYGD+SLTQIT +P GRIPVET+IFEG   G + VY MM E+L 
Sbjct: 700  VLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETGIKEVYSMMLEDLK 759

Query: 902  SGGKVYIVYPIIEASEQLPQLRAASSDLETISETFDGYQCGLLHGRMKSDEKDEALRRFR 723
            SGG+VY+VYP+I+ SEQLPQLRAAS++LE +++ F  Y CGLLHGRMKSD+K+EAL +FR
Sbjct: 760  SGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRMKSDDKEEALNKFR 819

Query: 722  SGETNILLSTQVVEIGVDIPDASMMVVMNAERFGIAQLHQLRGRVGRGVKKSKCVFLASS 543
            SGET ILLSTQV+EIGVD+PDASMMVVMNAERFGIAQLHQLRGRVGRG +KSKC+ + SS
Sbjct: 820  SGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKSKCLLVGSS 879

Query: 542  ASGLNRLKVLEKSSDGFYLAXXXXXXXXXXXXXXXKQSGHIPEFPIARLEIDGNMLEEAH 363
             + L RL +L KSSDGFYLA               KQSGH+PEFP+ARLEIDGNML+EAH
Sbjct: 880  TNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVARLEIDGNMLQEAH 939

Query: 362  RAALKILGTSHDLQRFPKLKAELSMRQPLCLLGD 261
             AAL +LG SHDL++FP LKAELSMRQPLCLLGD
Sbjct: 940  IAALNVLGDSHDLEKFPALKAELSMRQPLCLLGD 973



 Score =  135 bits (339), Expect(2) = 0.0
 Identities = 101/322 (31%), Positives = 157/322 (48%), Gaps = 9/322 (2%)
 Frame = -2

Query: 3348 VTLSVNSHYLCCNEKNLKSA------KGYLNAVGRNMRFSTFLQSKLLKLCSRSNKNCAH 3187
            VTLS  S  +CC  + L+S       +G  N +    R S F  SK+  +  RS    + 
Sbjct: 4    VTLSPCS--MCCGSRRLRSVIVIQAQRGNWNRI----RLSNFFFSKVWNISYRSKHKYSD 57

Query: 3186 KLLEEVNGYGKASVSDRSKLLNKVSVLLGYKSVQDLVENESGQKLSGANFKDILNELEVS 3007
             LLE+V  Y  A + ++SKL+ KV+ L+   +V D ++ +S +++     KD++      
Sbjct: 58   NLLEQVEKYASARLENQSKLITKVAALMECDNVDDFIDKKSDEQVK----KDLV------ 107

Query: 3006 LACERFSSIIMGSSSPILLFDELACKSEGINHMIDQNCHICLPSSIGGEMFDVERMTEPS 2827
            LAC+RF SII+G S P+ L+       E  + +     +  LP+ + G  FD + ++   
Sbjct: 108  LACKRFPSIILGDSRPVELYSNSKSYGESSSILKTPTDNSFLPTPMHGGWFDPDNLSRTL 167

Query: 2826 LDFPVAVDSSLLKELDSPVVEDLCLLEEKSSDVLPISLQSVPLQTERKPVSYDIAEKPTF 2647
                    SS   EL         L  + SSD              R+ +  D +   + 
Sbjct: 168  --------SSFCPEL---------LQNDDSSD-------------PREDILDDGSSFTSK 197

Query: 2646 TLPSESE---QKIISIELILDKPLSSIPGMSSKQCCQLEKCDIHTLRQLLHHFPRTYADL 2476
            T  SE E     + + +  L   + S+PG+S +   QL+ C  HT+++LLHHFPRTYADL
Sbjct: 198  TATSEVEATSDDVFAAQRFLATSIDSMPGLSKRHSNQLDSCGFHTMKKLLHHFPRTYADL 257

Query: 2475 QNAHGEIVDGNYMISFGRILSS 2410
            QNA  +I DG Y+I  G++LSS
Sbjct: 258  QNAQVDIEDGQYLIFVGKVLSS 279