BLASTX nr result

ID: Coptis25_contig00002847 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002847
         (1162 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515492.1| Vesicle-associated membrane protein, putativ...   336   6e-90
ref|XP_004136359.1| PREDICTED: vesicle-associated membrane prote...   330   5e-88
ref|XP_002324304.1| predicted protein [Populus trichocarpa] gi|1...   328   1e-87
ref|XP_002308673.1| predicted protein [Populus trichocarpa] gi|1...   328   2e-87
ref|XP_003519511.1| PREDICTED: vesicle-associated membrane prote...   327   3e-87

>ref|XP_002515492.1| Vesicle-associated membrane protein, putative [Ricinus communis]
           gi|223545436|gb|EEF46941.1| Vesicle-associated membrane
           protein, putative [Ricinus communis]
          Length = 220

 Score =  336 bits (862), Expect = 6e-90
 Identities = 168/218 (77%), Positives = 185/218 (84%)
 Frame = -3

Query: 998 MAILYALVARGSVILAEFSATSTNASAIARQILEKIPGNDDSNVSYSQDRFIFHVKRTDG 819
           MAILYALVARGSV+LAEF+AT+TNASAIARQILEKIPGN+DS+VSYSQDR+IFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFTATATNASAIARQILEKIPGNNDSHVSYSQDRYIFHVKRTDG 60

Query: 818 LSVLCMADDAAGRRIPFAFLEDIHGRFVKTYGRAVHTALAYGMNDEFSRILSQQMDFYSN 639
           L+VLCMADD AGRRIPFAFLEDIH RFV+TYGRAVH+A AY MNDEFSR+L+QQM++YSN
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSAQAYAMNDEFSRVLNQQMEYYSN 120

Query: 638 DPNADRLNRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTSTMQGNXXXXXXXXXXXK 459
           DPNADR+NRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKT+ MQGN           +
Sbjct: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180

Query: 458 NSVWWRNVKLTXXXXXXXXXXXXXXXAFVCHGPLLPSC 345
           N+VWWRNVKLT               AFVCHGP LP C
Sbjct: 181 NTVWWRNVKLTIALIVLILVIVYVVLAFVCHGPALPRC 218


>ref|XP_004136359.1| PREDICTED: vesicle-associated membrane protein 713-like [Cucumis
           sativus] gi|449516866|ref|XP_004165467.1| PREDICTED:
           vesicle-associated membrane protein 713-like [Cucumis
           sativus]
          Length = 219

 Score =  330 bits (845), Expect = 5e-88
 Identities = 163/218 (74%), Positives = 184/218 (84%)
 Frame = -3

Query: 998 MAILYALVARGSVILAEFSATSTNASAIARQILEKIPGNDDSNVSYSQDRFIFHVKRTDG 819
           MAI+YALVARGSV+LAEFSAT TNAS+I+RQIL+KIPGNDDS+VSYSQDR+IFHVKRTDG
Sbjct: 1   MAIIYALVARGSVVLAEFSATPTNASSISRQILDKIPGNDDSHVSYSQDRYIFHVKRTDG 60

Query: 818 LSVLCMADDAAGRRIPFAFLEDIHGRFVKTYGRAVHTALAYGMNDEFSRILSQQMDFYSN 639
           L+VLCMADD AGRRIPFAFLEDIH RFV+TYGRAVH+A AYGMNDEFSR+LSQQ+++YSN
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSANAYGMNDEFSRVLSQQLEYYSN 120

Query: 638 DPNADRLNRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTSTMQGNXXXXXXXXXXXK 459
           DPNADR+NRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKT+ MQGN           +
Sbjct: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTTNMQGNTMRFRKQARRFR 180

Query: 458 NSVWWRNVKLTXXXXXXXXXXXXXXXAFVCHGPLLPSC 345
           N++WW+NVKL                AFVCHG  LP+C
Sbjct: 181 NTIWWKNVKLMVMLIILLLVIAYLVLAFVCHGVTLPTC 218


>ref|XP_002324304.1| predicted protein [Populus trichocarpa] gi|118482139|gb|ABK93000.1|
           unknown [Populus trichocarpa]
           gi|222865738|gb|EEF02869.1| predicted protein [Populus
           trichocarpa]
          Length = 220

 Score =  328 bits (842), Expect = 1e-87
 Identities = 165/218 (75%), Positives = 184/218 (84%)
 Frame = -3

Query: 998 MAILYALVARGSVILAEFSATSTNASAIARQILEKIPGNDDSNVSYSQDRFIFHVKRTDG 819
           MAILYALVARGSV+LAEF++T+TNASAIARQIL+KIPGNDDSNVSYSQDR+IFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFTSTATNASAIARQILDKIPGNDDSNVSYSQDRYIFHVKRTDG 60

Query: 818 LSVLCMADDAAGRRIPFAFLEDIHGRFVKTYGRAVHTALAYGMNDEFSRILSQQMDFYSN 639
           L+VLCMAD+ AGRRIPFAFLEDIH RFV+TYGRAV TA AY MNDEFSR+LSQQM++Y+N
Sbjct: 61  LTVLCMADETAGRRIPFAFLEDIHQRFVRTYGRAVITAQAYAMNDEFSRVLSQQMEYYTN 120

Query: 638 DPNADRLNRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTSTMQGNXXXXXXXXXXXK 459
           DPNADR+NRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKT+ MQGN           +
Sbjct: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFR 180

Query: 458 NSVWWRNVKLTXXXXXXXXXXXXXXXAFVCHGPLLPSC 345
           ++VWWRNVKLT               AFVCHG  LP+C
Sbjct: 181 STVWWRNVKLTVALILLLLVIIYVVLAFVCHGLTLPTC 218


>ref|XP_002308673.1| predicted protein [Populus trichocarpa] gi|118487208|gb|ABK95432.1|
           unknown [Populus trichocarpa]
           gi|222854649|gb|EEE92196.1| predicted protein [Populus
           trichocarpa]
          Length = 220

 Score =  328 bits (840), Expect = 2e-87
 Identities = 165/219 (75%), Positives = 182/219 (83%)
 Frame = -3

Query: 998 MAILYALVARGSVILAEFSATSTNASAIARQILEKIPGNDDSNVSYSQDRFIFHVKRTDG 819
           MAILYALVARGSV+LAEFS+T+TNASAIARQIL+KIPGNDDSNVSYSQDR+IFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFSSTATNASAIARQILDKIPGNDDSNVSYSQDRYIFHVKRTDG 60

Query: 818 LSVLCMADDAAGRRIPFAFLEDIHGRFVKTYGRAVHTALAYGMNDEFSRILSQQMDFYSN 639
           L+VLCMAD+ AGRRIPFAFLEDIH RF +TYGRAV TA AY MNDEFSR+LSQQM++Y+N
Sbjct: 61  LAVLCMADETAGRRIPFAFLEDIHQRFARTYGRAVITAQAYAMNDEFSRVLSQQMEYYTN 120

Query: 638 DPNADRLNRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTSTMQGNXXXXXXXXXXXK 459
           DPNADR+NRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKT+ MQGN            
Sbjct: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFS 180

Query: 458 NSVWWRNVKLTXXXXXXXXXXXXXXXAFVCHGPLLPSCR 342
           ++VWWRNVKLT               A VCHG  LP+CR
Sbjct: 181 SAVWWRNVKLTVALILLLLVIIYVVLAVVCHGVTLPTCR 219


>ref|XP_003519511.1| PREDICTED: vesicle-associated membrane protein 713-like [Glycine
           max]
          Length = 219

 Score =  327 bits (839), Expect = 3e-87
 Identities = 162/218 (74%), Positives = 183/218 (83%)
 Frame = -3

Query: 998 MAILYALVARGSVILAEFSATSTNASAIARQILEKIPGNDDSNVSYSQDRFIFHVKRTDG 819
           M ILYALV RGSV+LAEFS T+TNASAIARQILEKIPGN+D++VSYSQDR+IFHVKRTDG
Sbjct: 1   MGILYALVGRGSVVLAEFSGTTTNASAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60

Query: 818 LSVLCMADDAAGRRIPFAFLEDIHGRFVKTYGRAVHTALAYGMNDEFSRILSQQMDFYSN 639
           L+VLCMADD AGRRIPFAFLEDIH +FV+TYGRAVH+A  YGMN+EFSR+LSQQM++YS+
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQKFVRTYGRAVHSAQPYGMNEEFSRVLSQQMEYYSS 120

Query: 638 DPNADRLNRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTSTMQGNXXXXXXXXXXXK 459
           DPNADR+NRLKGEMSQVRNVMIENIDKVL+RGDRLELLVDKT+ MQGN           +
Sbjct: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKTANMQGNTFRFRKQARRFR 180

Query: 458 NSVWWRNVKLTXXXXXXXXXXXXXXXAFVCHGPLLPSC 345
           ++VWWRNVKLT               AFVCHGP LPSC
Sbjct: 181 STVWWRNVKLTIALIVVLLVIVYVVLAFVCHGPALPSC 218


Top