BLASTX nr result
ID: Coptis25_contig00002846
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00002846 (333 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containi... 86 8e-29 ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi... 80 6e-26 emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera] 80 6e-26 emb|CBI15662.3| unnamed protein product [Vitis vinifera] 80 6e-26 ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containi... 80 5e-25 >ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Cucumis sativus] gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Cucumis sativus] Length = 706 Score = 86.3 bits (212), Expect(2) = 8e-29 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 7/83 (8%) Frame = -3 Query: 331 KPKPSQ-------NIEKQESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173 +PKPS+ +E+HV+KS+ G+C++IE LV +KY DALE+FEI E E D + Sbjct: 71 QPKPSKLDVGDRKETPLKETHVKKSSVGICSQIEKLVLCKKYRDALEMFEIFELE-DGFH 129 Query: 172 VGVSTFDALVNACIELKSIRGVK 104 VG ST+DAL+NACI LKSIRGVK Sbjct: 130 VGYSTYDALINACIGLKSIRGVK 152 Score = 65.9 bits (159), Expect(2) = 8e-29 Identities = 29/33 (87%), Positives = 30/33 (90%) Frame = -1 Query: 99 GFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1 GFEPDQYM NRVLLMHVKCGMM+D RLFDEMP Sbjct: 162 GFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMP 194 >ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Vitis vinifera] Length = 704 Score = 80.1 bits (196), Expect(2) = 6e-26 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%) Frame = -3 Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173 KPKPS N+ K+ E+ +RK +S LC +IE LV F++Y +ALELFEI+E G YD Sbjct: 70 KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128 Query: 172 VGVSTFDALVNACIELKSIRGVK 104 + T+DALV+ACI LKSIRGVK Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151 Score = 62.4 bits (150), Expect(2) = 6e-26 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -1 Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1 +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193 >emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera] Length = 704 Score = 80.1 bits (196), Expect(2) = 6e-26 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%) Frame = -3 Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173 KPKPS N+ K+ E+ +RK +S LC +IE LV F++Y +ALELFEI+E G YD Sbjct: 70 KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128 Query: 172 VGVSTFDALVNACIELKSIRGVK 104 + T+DALV+ACI LKSIRGVK Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151 Score = 62.4 bits (150), Expect(2) = 6e-26 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -1 Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1 +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193 >emb|CBI15662.3| unnamed protein product [Vitis vinifera] Length = 657 Score = 80.1 bits (196), Expect(2) = 6e-26 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%) Frame = -3 Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173 KPKPS N+ K+ E+ +RK +S LC +IE LV F++Y +ALELFEI+E G YD Sbjct: 70 KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128 Query: 172 VGVSTFDALVNACIELKSIRGVK 104 + T+DALV+ACI LKSIRGVK Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151 Score = 62.4 bits (150), Expect(2) = 6e-26 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -1 Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1 +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193 >ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Glycine max] Length = 691 Score = 79.7 bits (195), Expect(2) = 5e-25 Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 6/82 (7%) Frame = -3 Query: 331 KPKPSQNIEK-----QESHVRK-STSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDV 170 KPK + +E+ +++ +RK S SGLC++IE LV ++ +A+ELFEI+E E D Y V Sbjct: 57 KPKKVEYMERNVPVLEDTQIRKTSPSGLCSQIEKLVVCNRHREAMELFEILELEHDGYGV 116 Query: 169 GVSTFDALVNACIELKSIRGVK 104 G ST+DALV+AC+ L+SIRGVK Sbjct: 117 GASTYDALVSACVGLRSIRGVK 138 Score = 59.7 bits (143), Expect(2) = 5e-25 Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = -1 Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1 +GFEPD Y+ NRVL MHVKCG+M+D ++LFDEMP Sbjct: 147 SGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMP 180