BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002846
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containi...    86   8e-29
ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi...    80   6e-26
emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]    80   6e-26
emb|CBI15662.3| unnamed protein product [Vitis vinifera]               80   6e-26
ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containi...    80   5e-25

>ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
           gi|449517215|ref|XP_004165641.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score = 86.3 bits (212), Expect(2) = 8e-29
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 7/83 (8%)
 Frame = -3

Query: 331 KPKPSQ-------NIEKQESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173
           +PKPS+           +E+HV+KS+ G+C++IE LV  +KY DALE+FEI E E D + 
Sbjct: 71  QPKPSKLDVGDRKETPLKETHVKKSSVGICSQIEKLVLCKKYRDALEMFEIFELE-DGFH 129

Query: 172 VGVSTFDALVNACIELKSIRGVK 104
           VG ST+DAL+NACI LKSIRGVK
Sbjct: 130 VGYSTYDALINACIGLKSIRGVK 152



 Score = 65.9 bits (159), Expect(2) = 8e-29
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -1

Query: 99  GFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1
           GFEPDQYM NRVLLMHVKCGMM+D  RLFDEMP
Sbjct: 162 GFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMP 194


>ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score = 80.1 bits (196), Expect(2) = 6e-26
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%)
 Frame = -3

Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173
           KPKPS    N+ K+    E+ +RK +S LC +IE LV F++Y +ALELFEI+E  G  YD
Sbjct: 70  KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128

Query: 172 VGVSTFDALVNACIELKSIRGVK 104
           +   T+DALV+ACI LKSIRGVK
Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151



 Score = 62.4 bits (150), Expect(2) = 6e-26
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -1

Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1
           +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP
Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193


>emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score = 80.1 bits (196), Expect(2) = 6e-26
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%)
 Frame = -3

Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173
           KPKPS    N+ K+    E+ +RK +S LC +IE LV F++Y +ALELFEI+E  G  YD
Sbjct: 70  KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128

Query: 172 VGVSTFDALVNACIELKSIRGVK 104
           +   T+DALV+ACI LKSIRGVK
Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151



 Score = 62.4 bits (150), Expect(2) = 6e-26
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -1

Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1
           +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP
Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193


>emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 80.1 bits (196), Expect(2) = 6e-26
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 7/83 (8%)
 Frame = -3

Query: 331 KPKPSQ---NIEKQ----ESHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYD 173
           KPKPS    N+ K+    E+ +RK +S LC +IE LV F++Y +ALELFEI+E  G  YD
Sbjct: 70  KPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNG-AYD 128

Query: 172 VGVSTFDALVNACIELKSIRGVK 104
           +   T+DALV+ACI LKSIRGVK
Sbjct: 129 MDSETYDALVSACIGLKSIRGVK 151



 Score = 62.4 bits (150), Expect(2) = 6e-26
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -1

Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1
           +G +PD+Y+ NRVLLMHVKCGMM+D +RLFDEMP
Sbjct: 160 SGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMP 193


>ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score = 79.7 bits (195), Expect(2) = 5e-25
 Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 6/82 (7%)
 Frame = -3

Query: 331 KPKPSQNIEK-----QESHVRK-STSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDV 170
           KPK  + +E+     +++ +RK S SGLC++IE LV   ++ +A+ELFEI+E E D Y V
Sbjct: 57  KPKKVEYMERNVPVLEDTQIRKTSPSGLCSQIEKLVVCNRHREAMELFEILELEHDGYGV 116

Query: 169 GVSTFDALVNACIELKSIRGVK 104
           G ST+DALV+AC+ L+SIRGVK
Sbjct: 117 GASTYDALVSACVGLRSIRGVK 138



 Score = 59.7 bits (143), Expect(2) = 5e-25
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = -1

Query: 102 TGFEPDQYMHNRVLLMHVKCGMMMDGKRLFDEMP 1
           +GFEPD Y+ NRVL MHVKCG+M+D ++LFDEMP
Sbjct: 147 SGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMP 180