BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002788
         (1188 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524966.1| sigma factor sigb regulation protein rsbq, p...   446   e-123
ref|XP_002284043.1| PREDICTED: sigma factor sigB regulation prot...   445   e-123
ref|NP_001050445.1| Os03g0437600 [Oryza sativa Japonica Group] g...   444   e-122
gb|AFK41000.1| unknown [Medicago truncatula]                          441   e-121
ref|XP_003608457.1| Sigma factor sigB regulation protein rsbQ [M...   441   e-121

>ref|XP_002524966.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
           communis] gi|223535801|gb|EEF37463.1| sigma factor sigb
           regulation protein rsbq, putative [Ricinus communis]
          Length = 270

 Score =  446 bits (1148), Expect = e-123
 Identities = 215/270 (79%), Positives = 244/270 (90%)
 Frame = +3

Query: 156 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 335
           MGIVEEAHN+++LGTGE++IVLAHGFGTDQSVWKHLVPHL+++++VVLFDNMGAG TNPD
Sbjct: 1   MGIVEEAHNVKILGTGEQVIVLAHGFGTDQSVWKHLVPHLIDDFKVVLFDNMGAGTTNPD 60

Query: 336 YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXXNRPDLFSKLVLISA 515
           YFDFERY+ LEGYAYDLLAILEELQV SC+F               +RPDLF+K+V+ISA
Sbjct: 61  YFDFERYAGLEGYAYDLLAILEELQVESCVFVGHSVSAMVGVVASISRPDLFTKIVMISA 120

Query: 516 SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 695
           SPRYLND DYYGGFEQEDL+QLFEA+ +NYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN
Sbjct: 121 SPRYLNDVDYYGGFEQEDLNQLFEAMEANYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180

Query: 696 IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 875
           +RPDIALSVAQTIFQSD+R  L +VSVPCHI+QS KDLAVPVVVSEYLH++LGSESI EV
Sbjct: 181 MRPDIALSVAQTIFQSDMRSILHMVSVPCHIVQSGKDLAVPVVVSEYLHQNLGSESIAEV 240

Query: 876 MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 965
           MS+DGHLPQLSSPD+V+PVLLRHIRH+I A
Sbjct: 241 MSTDGHLPQLSSPDVVIPVLLRHIRHNITA 270


>ref|XP_002284043.1| PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis
           vinifera] gi|147783136|emb|CAN70905.1| hypothetical
           protein VITISV_044176 [Vitis vinifera]
           gi|147795384|emb|CAN74235.1| hypothetical protein
           VITISV_040226 [Vitis vinifera]
          Length = 270

 Score =  445 bits (1145), Expect = e-123
 Identities = 219/268 (81%), Positives = 239/268 (89%)
 Frame = +3

Query: 156 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 335
           MGIVEEAHNL+V+G+GE+IIVLAHGFGTDQS+WKHLVPHLV++YRV+LFDNMGAG TNP+
Sbjct: 1   MGIVEEAHNLKVVGSGEQIIVLAHGFGTDQSLWKHLVPHLVDDYRVILFDNMGAGTTNPE 60

Query: 336 YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXXNRPDLFSKLVLISA 515
           YFDFERYS LEGYAYD+LAILEELQV SCIF                RPDLFSKL+ I+ 
Sbjct: 61  YFDFERYSNLEGYAYDVLAILEELQVQSCIFVGHSVSAMIGAIASITRPDLFSKLISING 120

Query: 516 SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 695
           SPRYLND DYYGGFEQEDLDQLFEA+GSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN
Sbjct: 121 SPRYLNDVDYYGGFEQEDLDQLFEAMGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180

Query: 696 IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 875
           +RPDIALSVAQTIFQ DLR  L  V+VPCHILQS KDLAVPVVVSEYLH++LG ESIVEV
Sbjct: 181 MRPDIALSVAQTIFQVDLRQILCHVTVPCHILQSIKDLAVPVVVSEYLHQNLGGESIVEV 240

Query: 876 MSSDGHLPQLSSPDIVVPVLLRHIRHDI 959
           M+SDGHLPQLSSPDIVVPVLLRHIR++I
Sbjct: 241 MTSDGHLPQLSSPDIVVPVLLRHIRYNI 268


>ref|NP_001050445.1| Os03g0437600 [Oryza sativa Japonica Group]
           gi|108709023|gb|ABF96818.1| hydrolase, alpha/beta fold
           family protein, expressed [Oryza sativa Japonica Group]
           gi|113548916|dbj|BAF12359.1| Os03g0437600 [Oryza sativa
           Japonica Group] gi|215679017|dbj|BAG96447.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215692426|dbj|BAG87846.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737519|dbj|BAG96649.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 271

 Score =  444 bits (1142), Expect = e-122
 Identities = 218/269 (81%), Positives = 240/269 (89%), Gaps = 1/269 (0%)
 Frame = +3

Query: 156 MGIVEEAHNLRVLGTGEK-IIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNP 332
           MGIVEEAHNLRV+G G++ +IVLAHGFGTDQSVWKHLVPHLV +YRVVLFD MGAGPTNP
Sbjct: 1   MGIVEEAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNP 60

Query: 333 DYFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXXNRPDLFSKLVLIS 512
           DYFDF RY+TLEGYA DLLAIL+EL+V SCI+               +RPDLFSKLVL+S
Sbjct: 61  DYFDFSRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLS 120

Query: 513 ASPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLF 692
           ASPRYLND DYYGGFEQEDLD+LFEA+GSNYKAWCSGFAPL VGGDM+SVAVQEFSRTLF
Sbjct: 121 ASPRYLNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLF 180

Query: 693 NIRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVE 872
           NIRPDIALSVAQTIFQSD+R  L LV+VPCHI+QSTKDLAVPVVVSEYLH+HLG +SIVE
Sbjct: 181 NIRPDIALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVE 240

Query: 873 VMSSDGHLPQLSSPDIVVPVLLRHIRHDI 959
           VM S+GHLPQLSSPDIV+PVLLRHI+HDI
Sbjct: 241 VMPSEGHLPQLSSPDIVIPVLLRHIQHDI 269


>gb|AFK41000.1| unknown [Medicago truncatula]
          Length = 270

 Score =  441 bits (1135), Expect = e-121
 Identities = 209/270 (77%), Positives = 243/270 (90%)
 Frame = +3

Query: 156 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 335
           MGIVEEAHN++VLG+G + IVLAHGFGTDQSVWKHLVPHL++E+RV+L+DNMGAG TNPD
Sbjct: 1   MGIVEEAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD 60

Query: 336 YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXXNRPDLFSKLVLISA 515
           YFDFERYSTLEGYAYDLLAILEEL+V SCIF               +RPDLF+K++LISA
Sbjct: 61  YFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISA 120

Query: 516 SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 695
           SPRYLND DY+GGFEQEDLDQLF+A+ SNYK+WCSGFAP+AVGGDM+SVAVQEFSRTLFN
Sbjct: 121 SPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFN 180

Query: 696 IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 875
           +RPDIALSV QTIF+SD+R  L +V+VPCHI+QS KDLAVPVVV+EYLH+H+GSESIVEV
Sbjct: 181 MRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEV 240

Query: 876 MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 965
           MS++GHLPQLSSPD+VVPV+L+HIRHDI A
Sbjct: 241 MSTEGHLPQLSSPDVVVPVILKHIRHDIAA 270


>ref|XP_003608457.1| Sigma factor sigB regulation protein rsbQ [Medicago truncatula]
           gi|355509512|gb|AES90654.1| Sigma factor sigB regulation
           protein rsbQ [Medicago truncatula]
          Length = 270

 Score =  441 bits (1134), Expect = e-121
 Identities = 208/270 (77%), Positives = 243/270 (90%)
 Frame = +3

Query: 156 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 335
           MGIVEEAHN++VLG+G + IVLAHGFGTDQSVWKHLVPHL++E+RV+L+DNMGAG TNPD
Sbjct: 1   MGIVEEAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD 60

Query: 336 YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXXNRPDLFSKLVLISA 515
           YFDFERYSTLEGYAYDLLAILEEL+V SCIF               +RPDLF+K++LISA
Sbjct: 61  YFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISA 120

Query: 516 SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 695
           SPRYLND DY+GGFEQEDLDQLF+A+ SNYK+WCSGFAP+AVGGDM+SVAVQEFSRTLFN
Sbjct: 121 SPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFN 180

Query: 696 IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 875
           +RPDIALSV QTIF+SD+R  L +V+VPCHI+QS KDLAVPVVV+EYLH+H+GSESIVEV
Sbjct: 181 MRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEV 240

Query: 876 MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 965
           MS++GHLPQLSSPD+V+PV+L+HIRHDI A
Sbjct: 241 MSTEGHLPQLSSPDVVIPVILKHIRHDIAA 270