BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002771
         (1750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   979   0.0  
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-...   972   0.0  
ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ...   966   0.0  
emb|CBI15412.3| unnamed protein product [Vitis vinifera]              966   0.0  
ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2...   947   0.0  

>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
            gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
            MSH2, putative [Ricinus communis]
          Length = 936

 Score =  979 bits (2530), Expect = 0.0
 Identities = 491/583 (84%), Positives = 529/583 (90%)
 Frame = +1

Query: 1    GNYTIQRYNLDGYMRLDSAAMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWL 180
            GNYTI++YNLD YMRLDSAAMRALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WL
Sbjct: 277  GNYTIRKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWL 336

Query: 181  KQPLLDIVEINNRLDMVQAFVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKL 360
            KQPLLD+ EIN+RLD+VQAFVEDT LRQDLRQHLKRISDIERL+HNLEKRRAGLQHIVKL
Sbjct: 337  KQPLLDVNEINSRLDLVQAFVEDTALRQDLRQHLKRISDIERLVHNLEKRRAGLQHIVKL 396

Query: 361  YQSSIRLPSIKTALGRYDGQFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLEN 540
            YQSSIRLP I+ AL +YDGQF  L+KERYLDPLE  TDD+HLN+FIALVE SVDLDQL+N
Sbjct: 397  YQSSIRLPYIRGALDKYDGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLDN 456

Query: 541  GEYMISSGYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXXGTQFGHVFRI 720
            GEY+IS  YD  L+ALKDE++++E QIHNLHKQTA +             GTQFGHVFRI
Sbjct: 457  GEYLISPSYDPALSALKDEQESLECQIHNLHKQTAQDLDLPQDKGLKLDKGTQFGHVFRI 516

Query: 721  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVE 900
            TKKEEPKIRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ+++EEY +CQKELV RVV+
Sbjct: 517  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVQ 576

Query: 901  TAATFSEVFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVE 1080
            TAATFSEVF SLAG+LS++DVLLSFADLA SCPTPYTRP IT SD G+I+L GSRHPCVE
Sbjct: 577  TAATFSEVFKSLAGLLSQLDVLLSFADLATSCPTPYTRPDITPSDVGNIILEGSRHPCVE 636

Query: 1081 AQDGVNFISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASIS 1260
            AQD VNFI NDC L+RGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+ASIS
Sbjct: 637  AQDWVNFIPNDCKLIRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASIS 696

Query: 1261 VRDCIFARVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLA 1440
            VRDCIFARVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLA
Sbjct: 697  VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLA 756

Query: 1441 WAICEHLVEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKL 1620
            WAICEHLV+V +APTLFATHFHELT LA E A  EP  K   GVAN+HVSAHIDSS RKL
Sbjct: 757  WAICEHLVQVIKAPTLFATHFHELTGLADEKA--EPHMKQIAGVANYHVSAHIDSSNRKL 814

Query: 1621 TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 1749
            TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF
Sbjct: 815  TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 857


>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max]
          Length = 942

 Score =  972 bits (2513), Expect = 0.0
 Identities = 485/582 (83%), Positives = 527/582 (90%)
 Frame = +1

Query: 4    NYTIQRYNLDGYMRLDSAAMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLK 183
            NYT++ YNLD YMRLDSAAMRALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLK
Sbjct: 283  NYTLRSYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLK 342

Query: 184  QPLLDIVEINNRLDMVQAFVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLY 363
            QPL+D+ EIN+RLD+VQAFVEDT LRQDLRQHLKRISDIERLMHN++KRRAGLQHIVKLY
Sbjct: 343  QPLVDVKEINSRLDIVQAFVEDTALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLY 402

Query: 364  QSSIRLPSIKTALGRYDGQFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENG 543
            QSSIRLP IK+AL RYDGQF  +++ RYL+P+E WTDDEHLN+FI LVEASVDLDQLEN 
Sbjct: 403  QSSIRLPYIKSALERYDGQFSTMMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENR 462

Query: 544  EYMISSGYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXXGTQFGHVFRIT 723
            EYMIS  YDS LA LKD+++ +E QI NLH+QTA++             GTQFGHVFRIT
Sbjct: 463  EYMISPSYDSILANLKDQQELLESQIQNLHRQTADDLDLPMDKALKLDKGTQFGHVFRIT 522

Query: 724  KKEEPKIRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVET 903
            KKEEPKIRKKL TQFI+LETRKDGVKFTN+KLKKLGDQYQ++LEEY SCQK+LV RVV+T
Sbjct: 523  KKEEPKIRKKLNTQFIILETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQT 582

Query: 904  AATFSEVFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEA 1083
            AATFSEVF+SLA I+SE+DVLLSFADLA SCPTPYTRP IT SDEGDI L G RHPCVEA
Sbjct: 583  AATFSEVFESLAEIISELDVLLSFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEA 642

Query: 1084 QDGVNFISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISV 1263
            QD VNFI NDC LVRG++WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD ASISV
Sbjct: 643  QDWVNFIPNDCKLVRGKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDNASISV 702

Query: 1264 RDCIFARVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAW 1443
            RDCIFARVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLAW
Sbjct: 703  RDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAW 762

Query: 1444 AICEHLVEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLT 1623
            AICEH+VEV +APTLFATHFHELTALA EN  N+ S+K  +GVAN+HVSAHIDSSTRKLT
Sbjct: 763  AICEHIVEVIKAPTLFATHFHELTALALENVSND-SQKQIVGVANYHVSAHIDSSTRKLT 821

Query: 1624 MLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 1749
            MLYKVEPGACDQSFGIHVAEFANFPESVV LAREKAAELEDF
Sbjct: 822  MLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 863


>ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera]
          Length = 902

 Score =  966 bits (2496), Expect = 0.0
 Identities = 478/583 (81%), Positives = 529/583 (90%)
 Frame = +1

Query: 1    GNYTIQRYNLDGYMRLDSAAMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWL 180
            GN+TIQRYNLD YMRLDSAA+RALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WL
Sbjct: 241  GNFTIQRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWL 300

Query: 181  KQPLLDIVEINNRLDMVQAFVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKL 360
            KQPL+D+ EIN R D+VQAFVEDT LRQDLRQHLKRISDIERL+  LEKRRA LQH+VKL
Sbjct: 301  KQPLVDVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKL 360

Query: 361  YQSSIRLPSIKTALGRYDGQFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLEN 540
            YQSSIRLP IK+ALG+YDGQF  L+KE+YLDPLE WTDD+HLNRFI LVEA+VDL++LEN
Sbjct: 361  YQSSIRLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELEN 420

Query: 541  GEYMISSGYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXXGTQFGHVFRI 720
            GEYMISSGYD+ LA+LK++++ +E QIHNLHKQTA +             GTQFGHVFRI
Sbjct: 421  GEYMISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRI 480

Query: 721  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVE 900
            TKKEEPKIRKKLT +FIVLETRKDGVKFTN+KLKKLGDQYQ++L+EY  CQ+ELV RVV+
Sbjct: 481  TKKEEPKIRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQ 540

Query: 901  TAATFSEVFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVE 1080
            TAATFSEVF++LA +LSE+DVLLSFADLA S PT YTRP I+ S  GDI+L GSRHPCVE
Sbjct: 541  TAATFSEVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVE 600

Query: 1081 AQDGVNFISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASIS 1260
            AQD VNFI NDC LVR +SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+IS
Sbjct: 601  AQDWVNFIPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANIS 660

Query: 1261 VRDCIFARVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLA 1440
            VRDCIFARVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLA
Sbjct: 661  VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLA 720

Query: 1441 WAICEHLVEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKL 1620
            WAICEH+VEV +APTLFATHFHELTALA+EN D++P +K  +GVAN+HVSAHIDSS+RKL
Sbjct: 721  WAICEHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKL 780

Query: 1621 TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 1749
            TMLYKVEPGACDQSFGIHVAEFANFPESVV LAREKAAELEDF
Sbjct: 781  TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 823


>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  966 bits (2496), Expect = 0.0
 Identities = 478/583 (81%), Positives = 529/583 (90%)
 Frame = +1

Query: 1    GNYTIQRYNLDGYMRLDSAAMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWL 180
            GN+TIQRYNLD YMRLDSAA+RALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WL
Sbjct: 281  GNFTIQRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWL 340

Query: 181  KQPLLDIVEINNRLDMVQAFVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKL 360
            KQPL+D+ EIN R D+VQAFVEDT LRQDLRQHLKRISDIERL+  LEKRRA LQH+VKL
Sbjct: 341  KQPLVDVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKL 400

Query: 361  YQSSIRLPSIKTALGRYDGQFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLEN 540
            YQSSIRLP IK+ALG+YDGQF  L+KE+YLDPLE WTDD+HLNRFI LVEA+VDL++LEN
Sbjct: 401  YQSSIRLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELEN 460

Query: 541  GEYMISSGYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXXGTQFGHVFRI 720
            GEYMISSGYD+ LA+LK++++ +E QIHNLHKQTA +             GTQFGHVFRI
Sbjct: 461  GEYMISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRI 520

Query: 721  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVE 900
            TKKEEPKIRKKLT +FIVLETRKDGVKFTN+KLKKLGDQYQ++L+EY  CQ+ELV RVV+
Sbjct: 521  TKKEEPKIRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQ 580

Query: 901  TAATFSEVFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVE 1080
            TAATFSEVF++LA +LSE+DVLLSFADLA S PT YTRP I+ S  GDI+L GSRHPCVE
Sbjct: 581  TAATFSEVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVE 640

Query: 1081 AQDGVNFISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASIS 1260
            AQD VNFI NDC LVR +SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+IS
Sbjct: 641  AQDWVNFIPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANIS 700

Query: 1261 VRDCIFARVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLA 1440
            VRDCIFARVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLA
Sbjct: 701  VRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLA 760

Query: 1441 WAICEHLVEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKL 1620
            WAICEH+VEV +APTLFATHFHELTALA+EN D++P +K  +GVAN+HVSAHIDSS+RKL
Sbjct: 761  WAICEHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKL 820

Query: 1621 TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 1749
            TMLYKVEPGACDQSFGIHVAEFANFPESVV LAREKAAELEDF
Sbjct: 821  TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 863


>ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1|
            predicted protein [Populus trichocarpa]
          Length = 944

 Score =  947 bits (2448), Expect = 0.0
 Identities = 469/583 (80%), Positives = 518/583 (88%)
 Frame = +1

Query: 1    GNYTIQRYNLDGYMRLDSAAMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWL 180
            GNY I++YNLD YMRLDSAA RALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WL
Sbjct: 283  GNYRIRKYNLDSYMRLDSAATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWL 342

Query: 181  KQPLLDIVEINNRLDMVQAFVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKL 360
            KQPLL++  IN+RLD+VQAFV+DT LRQDLRQHLKRISDIERLMH +EK RAGL HIVKL
Sbjct: 343  KQPLLEVDAINSRLDLVQAFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKL 402

Query: 361  YQSSIRLPSIKTALGRYDGQFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLEN 540
            YQS IRLP IK AL RYDGQF  L+KE+YL+ LE WTDD HLN+FIALVE +VDLDQL+N
Sbjct: 403  YQSIIRLPYIKGALERYDGQFSSLIKEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDN 462

Query: 541  GEYMISSGYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXXGTQFGHVFRI 720
            GEYMIS GY++ L ALK E++++E QIHNLHKQTA++             GTQ+GHVFRI
Sbjct: 463  GEYMISPGYEAALGALKAEQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRI 522

Query: 721  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVE 900
            TKKEEPKIRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ+++E Y S QKELV+RVV+
Sbjct: 523  TKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVENYKSRQKELVSRVVQ 582

Query: 901  TAATFSEVFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVE 1080
              ATFSEVF+ L+G+LSE+DVLLSFADLA SCPTPYTRP IT SD GDI+L GSRHPCVE
Sbjct: 583  ITATFSEVFEKLSGLLSEMDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVE 642

Query: 1081 AQDGVNFISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASIS 1260
            AQD VNFI NDC LVRG+SWFQIITGPNMGGKSTFIRQ+GVNILMAQVGSF+PCD+A+IS
Sbjct: 643  AQDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATIS 702

Query: 1261 VRDCIFARVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLA 1440
            VRDCIFARVGAGDCQ+RGVSTFMQEMLETASI+KGATD+SLIIIDELGRGTSTYDGFGLA
Sbjct: 703  VRDCIFARVGAGDCQMRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLA 762

Query: 1441 WAICEHLVEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKL 1620
            WAICEHLV   +APTLFATHFHELTALA++  D EP  K  +GVAN+HVSAHIDSS  KL
Sbjct: 763  WAICEHLVRELKAPTLFATHFHELTALAHQKPDQEPHAKQIVGVANYHVSAHIDSSNHKL 822

Query: 1621 TMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDF 1749
            TMLYKVEPGACDQSFGIHVAEFANFPESVV LAREKAAELEDF
Sbjct: 823  TMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDF 865