BLASTX nr result
ID: Coptis25_contig00002758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002758
(2388 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|2... 447 e-123
ref|XP_002521202.1| translation initiation factor 2b, delta subu... 435 e-119
ref|XP_002283177.1| PREDICTED: translation initiation factor eIF... 433 e-118
emb|CBI16861.3| unnamed protein product [Vitis vinifera] 430 e-118
emb|CAN69725.1| hypothetical protein VITISV_009152 [Vitis vinifera] 429 e-117
>ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|222870772|gb|EEF07903.1|
predicted protein [Populus trichocarpa]
Length = 634
Score = 447 bits (1150), Expect = e-123
Identities = 236/343 (68%), Positives = 266/343 (77%), Gaps = 5/343 (1%)
Frame = +3
Query: 492 SGSNYPVASFTTVSAVKMA--DKG---LVETKNDRPTSSKPLKEKTSXXXXXXXXXXXXX 656
+ S+ P + TTVS V +KG VE +ND+ + SK LKEKT+
Sbjct: 130 AASSVPASGLTTVSVVNNLPIEKGGGVAVEMQNDQSSRSKSLKEKTTKAERRALQEAQRA 189
Query: 657 XXXXXXXXGGRHTGAIASGGPAHAKTTKVVNNPPQKKDAPPTVVPEKKGSDRPPEKDRKK 836
GG+ T A ASG A AK+ K V P QK D+ V EKKG DRPPEKDRKK
Sbjct: 190 AKAAAKAEGGK-TPAAASGAAASAKSAKSVKPPSQKNDSATVAVSEKKGGDRPPEKDRKK 248
Query: 837 DIPPPRMQFDDKTRVEKAKRRSVVKQTEARNRVELFRHLPQYEHGTQLPNLESKFFQLDP 1016
++P PRMQ+DDK+RVEKAKRR+VVKQTEARNRVELFRHLPQYE TQL LESKFF+LDP
Sbjct: 249 EVPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYERRTQLTELESKFFELDP 308
Query: 1017 MHPAVYKVGLQYLTGDVCGGNARCIAMLQAFKEAITDYSTPPEKALVRDLTAKISSYVSF 1196
MHPAVYKVGLQYL+GDVCGGNARCIAMLQAF+EAI DYSTP EK L RDLTAKI SY+SF
Sbjct: 309 MHPAVYKVGLQYLSGDVCGGNARCIAMLQAFQEAIKDYSTPSEKTLARDLTAKIGSYLSF 368
Query: 1197 MNECRPLSISMGNAIRFLKNRIAKLPLNLSEPEAKAILQSDIDRFINEKIVLADKVIVEH 1376
+ ECRPLSISMGNAIRFLKNRIAKLPL LSE E KA L SDIDRFINEKI+LADKVIV+H
Sbjct: 369 LIECRPLSISMGNAIRFLKNRIAKLPLTLSEAEVKATLHSDIDRFINEKIILADKVIVKH 428
Query: 1377 AVTKIRDGDVLLTHGASSVVEMILVYAHDIGKQFRVVVVDSRP 1505
AVTKI DGDVLLT+G+ S VEM+L++AH++GKQFRVVVVDSRP
Sbjct: 429 AVTKISDGDVLLTYGSPSAVEMVLLHAHELGKQFRVVVVDSRP 471
Score = 221 bits (562), Expect = 9e-55
Identities = 106/128 (82%), Positives = 116/128 (90%)
Frame = +2
Query: 1637 VFLGASSVLCNGTVYSRVGSACVSMVASAFRVPVLICCEAYKFHERVQLDSICSNELGDP 1816
VFLGASSVL NGTVYSRVG+ACV+MVA AFRVPVL+CCEAYKFHERVQLDS+CSNELGDP
Sbjct: 507 VFLGASSVLSNGTVYSRVGTACVAMVAHAFRVPVLVCCEAYKFHERVQLDSLCSNELGDP 566
Query: 1817 DTISKVPGREDVNHLENWSDSETLQLLNLTYDVTPSDYVSMIITDYGMVPPTSVPVIVRE 1996
D ISKV GRED+N L+ +DSE LQLLNL YD TPSDY+SMIITDYGMVPPTSVPVIVR+
Sbjct: 567 DVISKVRGREDINLLDGSTDSENLQLLNLIYDATPSDYISMIITDYGMVPPTSVPVIVRD 626
Query: 1997 YMREPLWM 2020
Y RE LW+
Sbjct: 627 YQREHLWI 634
>ref|XP_002521202.1| translation initiation factor 2b, delta subunit, putative [Ricinus
communis] gi|223539567|gb|EEF41154.1| translation
initiation factor 2b, delta subunit, putative [Ricinus
communis]
Length = 638
Score = 435 bits (1119), Expect = e-119
Identities = 232/345 (67%), Positives = 261/345 (75%), Gaps = 7/345 (2%)
Frame = +3
Query: 492 SGSNYPVASFTTVSAVKMADKGLVE-------TKNDRPTSSKPLKEKTSXXXXXXXXXXX 650
+ S+ P + TTVS GL E +N ++ K LKEKT+
Sbjct: 139 TSSSVPGSGLTTVSVFVNLPPGLDEKAGISTDVQNSNRSNLKRLKEKTTKAERRALQEAQ 198
Query: 651 XXXXXXXXXXGGRHTGAIASGGPAHAKTTKVVNNPPQKKDAPPTVVPEKKGSDRPPEKDR 830
G AI PA+AK K P QK D PT EKKG + PPEKDR
Sbjct: 199 QAAKAAAKAEGA----AI----PANAKLAKSAKVPSQKNDNAPTAASEKKGGEHPPEKDR 250
Query: 831 KKDIPPPRMQFDDKTRVEKAKRRSVVKQTEARNRVELFRHLPQYEHGTQLPNLESKFFQL 1010
KKD+P PRMQ+DDK+RVEKAK+R+VVKQTEARNRVELFRHLPQYEHGTQLP+LESKFFQL
Sbjct: 251 KKDVPQPRMQYDDKSRVEKAKKRAVVKQTEARNRVELFRHLPQYEHGTQLPDLESKFFQL 310
Query: 1011 DPMHPAVYKVGLQYLTGDVCGGNARCIAMLQAFKEAITDYSTPPEKALVRDLTAKISSYV 1190
DPMHPAVYKVGLQYL+GDVCGGNARCIAMLQAF+E I DYSTPPEK LVRDLTAKI SYV
Sbjct: 311 DPMHPAVYKVGLQYLSGDVCGGNARCIAMLQAFQEVINDYSTPPEKTLVRDLTAKIGSYV 370
Query: 1191 SFMNECRPLSISMGNAIRFLKNRIAKLPLNLSEPEAKAILQSDIDRFINEKIVLADKVIV 1370
SF+ ECRPLSISMGNAIRFLKNRIAKLPL LSE EAKA L +DID FI EKI++ADKVIV
Sbjct: 371 SFLIECRPLSISMGNAIRFLKNRIAKLPLTLSEAEAKATLHADIDCFIYEKIIVADKVIV 430
Query: 1371 EHAVTKIRDGDVLLTHGASSVVEMILVYAHDIGKQFRVVVVDSRP 1505
+HAVTKIRDGDVLLT+G+SS VEMIL++AH++GKQF+VVVVDSRP
Sbjct: 431 KHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGKQFQVVVVDSRP 475
Score = 206 bits (525), Expect = 2e-50
Identities = 100/128 (78%), Positives = 111/128 (86%)
Frame = +2
Query: 1637 VFLGASSVLCNGTVYSRVGSACVSMVASAFRVPVLICCEAYKFHERVQLDSICSNELGDP 1816
V LGASSVL NGTVYSRVG+ACV+M+A AF VPVL+CCEAYKFHERVQLDSICSNELGDP
Sbjct: 511 VVLGASSVLSNGTVYSRVGTACVAMMAHAFHVPVLVCCEAYKFHERVQLDSICSNELGDP 570
Query: 1817 DTISKVPGREDVNHLENWSDSETLQLLNLTYDVTPSDYVSMIITDYGMVPPTSVPVIVRE 1996
D ISKV GR+++N L + SE +QLLNL YD TPS+YVSMIITDYGMVPPTSVPVIVRE
Sbjct: 571 DAISKVHGRDEINFLGGCATSENMQLLNLIYDATPSEYVSMIITDYGMVPPTSVPVIVRE 630
Query: 1997 YMREPLWM 2020
Y RE W+
Sbjct: 631 YRREHWWI 638
Score = 64.3 bits (155), Expect = 1e-07
Identities = 43/106 (40%), Positives = 54/106 (50%), Gaps = 19/106 (17%)
Frame = +1
Query: 52 MDTRRVSRTVIDPKIRQVGFITPTSGPPPPLDRTQSGP-------------------ASN 174
MD RR SRTV DPK+RQVGF TP + P DR+QSGP + N
Sbjct: 1 MDPRRASRTVSDPKVRQVGFFTPGASSP---DRSQSGPPDPHPISSSPPTITDLSPSSGN 57
Query: 175 SLPPVTIPPRRHASDNLTSVPVNVPMSPLRKISINENMPVGSYESS 312
SL PV IPP RH V+ P+SPL + ++ P G+ +S
Sbjct: 58 SLSPVMIPPPRH---------VSAPLSPL----LRDSAPPGTMVNS 90
>ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like
[Vitis vinifera]
Length = 650
Score = 433 bits (1113), Expect = e-118
Identities = 233/341 (68%), Positives = 262/341 (76%), Gaps = 10/341 (2%)
Frame = +3
Query: 513 ASFTTVSAVKM-------ADKGLVETKNDRPTSSKPLKEKTSXXXXXXXXXXXXXXXXXX 671
++ TTVS V M + +E +N++P SS+ LKEKTS
Sbjct: 149 SNLTTVSVVNMPPGISVKSGGASIEVQNEQPASSRSLKEKTSKAERRALQEAQRAAKAAA 208
Query: 672 XXXGGRHTGAIASGGPA---HAKTTKVVNNPPQKKDAPPTVVPEKKGSDRPPEKDRKKDI 842
+ IA+ G A +AK KV QKKD+ EKKG DRPPEKDRKKD+
Sbjct: 209 KAEVSK--APIAASGVATSVNAKPAKVSKLSSQKKDSASVTASEKKGVDRPPEKDRKKDV 266
Query: 843 PPPRMQFDDKTRVEKAKRRSVVKQTEARNRVELFRHLPQYEHGTQLPNLESKFFQLDPMH 1022
P PRMQFDDK+RVEKAKRR+VV+ E RNRVELFRHLPQYE GT LP+LESKFF LDPMH
Sbjct: 267 PHPRMQFDDKSRVEKAKRRAVVRPIEVRNRVELFRHLPQYERGTLLPDLESKFFLLDPMH 326
Query: 1023 PAVYKVGLQYLTGDVCGGNARCIAMLQAFKEAITDYSTPPEKALVRDLTAKISSYVSFMN 1202
PAVYKVGLQYL GDV GGNARCIAMLQAF+EAI DYSTPPEK LVRDLTA++SSYVSF+
Sbjct: 327 PAVYKVGLQYLAGDVSGGNARCIAMLQAFQEAIKDYSTPPEKTLVRDLTARLSSYVSFLI 386
Query: 1203 ECRPLSISMGNAIRFLKNRIAKLPLNLSEPEAKAILQSDIDRFINEKIVLADKVIVEHAV 1382
ECRPLSISMGNAIRFLK+RIAKLPL+LSE EAKA LQSDI+RFINEKIVLADKVIV HAV
Sbjct: 387 ECRPLSISMGNAIRFLKSRIAKLPLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAV 446
Query: 1383 TKIRDGDVLLTHGASSVVEMILVYAHDIGKQFRVVVVDSRP 1505
TKIRDGDVLLT+G+SS VEMIL+YAH++GKQFRVVVVDSRP
Sbjct: 447 TKIRDGDVLLTYGSSSAVEMILLYAHELGKQFRVVVVDSRP 487
Score = 228 bits (582), Expect = 4e-57
Identities = 109/128 (85%), Positives = 119/128 (92%)
Frame = +2
Query: 1637 VFLGASSVLCNGTVYSRVGSACVSMVASAFRVPVLICCEAYKFHERVQLDSICSNELGDP 1816
VFLGASSVL NGTVYSRVG+ACVSMVA AFRVPVL+CCEAYKF+ERVQLDSICSNELGDP
Sbjct: 523 VFLGASSVLSNGTVYSRVGTACVSMVAHAFRVPVLVCCEAYKFYERVQLDSICSNELGDP 582
Query: 1817 DTISKVPGREDVNHLENWSDSETLQLLNLTYDVTPSDYVSMIITDYGMVPPTSVPVIVRE 1996
D ISKVPGRE++N+L++W+ SE LQLLNL YD TPSDYVSMIITDYGMVPPTSVPVIVRE
Sbjct: 583 DAISKVPGREEINYLDDWAKSENLQLLNLIYDATPSDYVSMIITDYGMVPPTSVPVIVRE 642
Query: 1997 YMREPLWM 2020
Y RE LW+
Sbjct: 643 YRREHLWI 650
Score = 81.3 bits (199), Expect = 1e-12
Identities = 53/106 (50%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Frame = +1
Query: 52 MDTRRVSRTVIDPKIRQVGFITP-------TSGPP----PPLDRTQSGPASNSLPPVTIP 198
MD RR +R VIDPK+RQVGF P SGPP PP+ + P NSL PV IP
Sbjct: 1 MDPRRGARVVIDPKVRQVGFFAPGASPGRTQSGPPESSSPPV--ADNSPTGNSLSPVMIP 58
Query: 199 PRRHASDNLTSV-PVNVPMSPLRKISINENMPVGSYESSQHFLGAS 333
P RHASDNL S P P PLR+ + +PVGSY S+ F G S
Sbjct: 59 PPRHASDNLLSARPALYP--PLRR--PGDTIPVGSYNPSEFFHGTS 100
>emb|CBI16861.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 430 bits (1106), Expect = e-118
Identities = 227/318 (71%), Positives = 253/318 (79%), Gaps = 3/318 (0%)
Frame = +3
Query: 561 VETKNDRPTSSKPLKEKTSXXXXXXXXXXXXXXXXXXXXXGGRHTGAIASGGPA---HAK 731
+E +N++P SS+ LKEKTS + IA+ G A +AK
Sbjct: 14 IEVQNEQPASSRSLKEKTSKAERRALQEAQRAAKAAAKAEVSK--APIAASGVATSVNAK 71
Query: 732 TTKVVNNPPQKKDAPPTVVPEKKGSDRPPEKDRKKDIPPPRMQFDDKTRVEKAKRRSVVK 911
KV QKKD+ EKKG DRPPEKDRKKD+P PRMQFDDK+RVEKAKRR+VV+
Sbjct: 72 PAKVSKLSSQKKDSASVTASEKKGVDRPPEKDRKKDVPHPRMQFDDKSRVEKAKRRAVVR 131
Query: 912 QTEARNRVELFRHLPQYEHGTQLPNLESKFFQLDPMHPAVYKVGLQYLTGDVCGGNARCI 1091
E RNRVELFRHLPQYE GT LP+LESKFF LDPMHPAVYKVGLQYL GDV GGNARCI
Sbjct: 132 PIEVRNRVELFRHLPQYERGTLLPDLESKFFLLDPMHPAVYKVGLQYLAGDVSGGNARCI 191
Query: 1092 AMLQAFKEAITDYSTPPEKALVRDLTAKISSYVSFMNECRPLSISMGNAIRFLKNRIAKL 1271
AMLQAF+EAI DYSTPPEK LVRDLTA++SSYVSF+ ECRPLSISMGNAIRFLK+RIAKL
Sbjct: 192 AMLQAFQEAIKDYSTPPEKTLVRDLTARLSSYVSFLIECRPLSISMGNAIRFLKSRIAKL 251
Query: 1272 PLNLSEPEAKAILQSDIDRFINEKIVLADKVIVEHAVTKIRDGDVLLTHGASSVVEMILV 1451
PL+LSE EAKA LQSDI+RFINEKIVLADKVIV HAVTKIRDGDVLLT+G+SS VEMIL+
Sbjct: 252 PLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAVTKIRDGDVLLTYGSSSAVEMILL 311
Query: 1452 YAHDIGKQFRVVVVDSRP 1505
YAH++GKQFRVVVVDSRP
Sbjct: 312 YAHELGKQFRVVVVDSRP 329
Score = 228 bits (582), Expect = 4e-57
Identities = 109/128 (85%), Positives = 119/128 (92%)
Frame = +2
Query: 1637 VFLGASSVLCNGTVYSRVGSACVSMVASAFRVPVLICCEAYKFHERVQLDSICSNELGDP 1816
VFLGASSVL NGTVYSRVG+ACVSMVA AFRVPVL+CCEAYKF+ERVQLDSICSNELGDP
Sbjct: 365 VFLGASSVLSNGTVYSRVGTACVSMVAHAFRVPVLVCCEAYKFYERVQLDSICSNELGDP 424
Query: 1817 DTISKVPGREDVNHLENWSDSETLQLLNLTYDVTPSDYVSMIITDYGMVPPTSVPVIVRE 1996
D ISKVPGRE++N+L++W+ SE LQLLNL YD TPSDYVSMIITDYGMVPPTSVPVIVRE
Sbjct: 425 DAISKVPGREEINYLDDWAKSENLQLLNLIYDATPSDYVSMIITDYGMVPPTSVPVIVRE 484
Query: 1997 YMREPLWM 2020
Y RE LW+
Sbjct: 485 YRREHLWI 492
>emb|CAN69725.1| hypothetical protein VITISV_009152 [Vitis vinifera]
Length = 841
Score = 429 bits (1104), Expect = e-117
Identities = 227/318 (71%), Positives = 252/318 (79%), Gaps = 3/318 (0%)
Frame = +3
Query: 561 VETKNDRPTSSKPLKEKTSXXXXXXXXXXXXXXXXXXXXXGGRHTGAIASGGPA---HAK 731
+E +N++P SS+ LKEKTS + IA+ G A +AK
Sbjct: 333 IEVQNEQPASSRSLKEKTSKAERRALQEAQRAAKAAAKAEVSK--APIAASGVATSVNAK 390
Query: 732 TTKVVNNPPQKKDAPPTVVPEKKGSDRPPEKDRKKDIPPPRMQFDDKTRVEKAKRRSVVK 911
KV QKKD EKKG DRPPEKDRKKD+P PRMQFDDK+RVEKAKRR+VV+
Sbjct: 391 PAKVSKLSSQKKDXASVTASEKKGVDRPPEKDRKKDVPHPRMQFDDKSRVEKAKRRAVVR 450
Query: 912 QTEARNRVELFRHLPQYEHGTQLPNLESKFFQLDPMHPAVYKVGLQYLTGDVCGGNARCI 1091
E RNRVELFRHLPQYE GT LP+LESKFF LDPMHPAVYKVGLQYL GDV GGNARCI
Sbjct: 451 PIEVRNRVELFRHLPQYERGTLLPDLESKFFLLDPMHPAVYKVGLQYLAGDVSGGNARCI 510
Query: 1092 AMLQAFKEAITDYSTPPEKALVRDLTAKISSYVSFMNECRPLSISMGNAIRFLKNRIAKL 1271
AMLQAF+EAI DYSTPPEK LVRDLTA++SSYVSF+ ECRPLSISMGNAIRFLK+RIAKL
Sbjct: 511 AMLQAFQEAIKDYSTPPEKTLVRDLTARLSSYVSFLIECRPLSISMGNAIRFLKSRIAKL 570
Query: 1272 PLNLSEPEAKAILQSDIDRFINEKIVLADKVIVEHAVTKIRDGDVLLTHGASSVVEMILV 1451
PL+LSE EAKA LQSDI+RFINEKIVLADKVIV HAVTKIRDGDVLLT+G+SS VEMIL+
Sbjct: 571 PLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAVTKIRDGDVLLTYGSSSAVEMILL 630
Query: 1452 YAHDIGKQFRVVVVDSRP 1505
YAH++GKQFRVVVVDSRP
Sbjct: 631 YAHELGKQFRVVVVDSRP 648
Score = 194 bits (493), Expect = 9e-47
Identities = 92/109 (84%), Positives = 102/109 (93%)
Frame = +2
Query: 1637 VFLGASSVLCNGTVYSRVGSACVSMVASAFRVPVLICCEAYKFHERVQLDSICSNELGDP 1816
VFLGASSVL NGTVYSRVG+ACVSMVA AFRVPVL+CCEAYKF+ERVQLDSICSNELGDP
Sbjct: 684 VFLGASSVLSNGTVYSRVGTACVSMVAHAFRVPVLVCCEAYKFYERVQLDSICSNELGDP 743
Query: 1817 DTISKVPGREDVNHLENWSDSETLQLLNLTYDVTPSDYVSMIITDYGMV 1963
D ISKVPGRE++N+L++W+ SE LQLLNL YD TPSDYVSMIITDYGM+
Sbjct: 744 DAISKVPGREEINYLDDWAKSENLQLLNLIYDATPSDYVSMIITDYGML 792
Score = 92.4 bits (228), Expect = 5e-16
Identities = 61/122 (50%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Frame = +1
Query: 7 LSHLKTLTHTQQFP-QMDTRRVSRTVIDPKIRQVGFITP-------TSGPP----PPLDR 150
+S LKTLTH + P MD RR +R VIDPK+RQVGF P SGPP PP+
Sbjct: 50 ISTLKTLTHIHETPLHMDPRRGARVVIDPKVRQVGFFAPGASPGRTQSGPPESSSPPV-- 107
Query: 151 TQSGPASNSLPPVTIPPRRHASDNLTSV-PVNVPMSPLRKISINENMPVGSYESSQHFLG 327
+ P NSL PV IPP RHASDNL S P P PLR+ + +PVGSY S+ F G
Sbjct: 108 ADNSPTGNSLSPVMIPPPRHASDNLLSARPALYP--PLRR--PGDTIPVGSYNPSEFFHG 163
Query: 328 AS 333
S
Sbjct: 164 TS 165