BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002754
         (277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565951.1| Nup93/Nic96 nucleoporin interacting component-c...   105   4e-26
ref|NP_191294.5| nuclear pore complex component Nup93/Nic96 doma...   106   4e-26
ref|XP_002284404.1| PREDICTED: uncharacterized protein At2g41620...   104   6e-26
ref|XP_002881785.1| nucleoporin interacting component family pro...   105   6e-26
ref|XP_003557916.1| PREDICTED: uncharacterized protein At2g41620...   102   2e-25

>ref|NP_565951.1| Nup93/Nic96 nucleoporin interacting component-containing protein
           [Arabidopsis thaliana]
           gi|21542465|sp|O22224.2|Y2162_ARATH RecName:
           Full=Uncharacterized protein At2g41620
           gi|14334432|gb|AAK59414.1| unknown protein [Arabidopsis
           thaliana] gi|20196948|gb|AAB84345.2| expressed protein
           [Arabidopsis thaliana] gi|21281026|gb|AAM44953.1|
           unknown protein [Arabidopsis thaliana]
           gi|330254914|gb|AEC10008.1| Nup93/Nic96 nucleoporin
           interacting component-containing protein [Arabidopsis
           thaliana]
          Length = 861

 Score =  105 bits (263), Expect(2) = 4e-26
 Identities = 52/70 (74%), Positives = 62/70 (88%)
 Frame = -3

Query: 212 LSEWITSGGMVSAETPATASEECEKMLRMGDRVG*SGYDKKKLLLYTIISGYRRQID*LL 33
           L+EWIT+ GMV+AE+ A ASEECEKMLRMGDR+G + YDKKKLLLYTIISG RRQI+ +L
Sbjct: 378 LTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKLLLYTIISGSRRQIERIL 437

Query: 32  GDIATLFNTI 3
            D++TLFNTI
Sbjct: 438 RDLSTLFNTI 447



 Score = 37.0 bits (84), Expect(2) = 4e-26
 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 8/29 (27%)
 Frame = -1

Query: 277 ASDARRQ--------QIYFCLRTGYYDEA 215
           ++DARRQ        QIYFCLRTGYY+EA
Sbjct: 333 STDARRQPPVDTTWQQIYFCLRTGYYEEA 361


>ref|NP_191294.5| nuclear pore complex component Nup93/Nic96 domain-containing
           protein [Arabidopsis thaliana]
           gi|332646124|gb|AEE79645.1| nuclear pore complex
           component Nup93/Nic96 domain-containing protein
           [Arabidopsis thaliana]
          Length = 860

 Score =  106 bits (264), Expect(2) = 4e-26
 Identities = 52/70 (74%), Positives = 61/70 (87%)
 Frame = -3

Query: 212 LSEWITSGGMVSAETPATASEECEKMLRMGDRVG*SGYDKKKLLLYTIISGYRRQID*LL 33
           L+EWIT+GG V+A+T ATASEECEK+LRMGDR G + YDKKKLLLYTIISG RRQID ++
Sbjct: 377 LTEWITTGGTVAAQTAATASEECEKLLRMGDRFGQTTYDKKKLLLYTIISGSRRQIDRIM 436

Query: 32  GDIATLFNTI 3
            D +TLFNTI
Sbjct: 437 RDFSTLFNTI 446



 Score = 36.6 bits (83), Expect(2) = 4e-26
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -1

Query: 271 DARRQQIYFCLRTGYYDEA 215
           D   QQIYFCLRTGYY+EA
Sbjct: 341 DTTWQQIYFCLRTGYYEEA 359


>ref|XP_002284404.1| PREDICTED: uncharacterized protein At2g41620 [Vitis vinifera]
           gi|297739625|emb|CBI29807.3| unnamed protein product
           [Vitis vinifera]
          Length = 863

 Score =  104 bits (260), Expect(2) = 6e-26
 Identities = 53/72 (73%), Positives = 60/72 (83%)
 Frame = -3

Query: 218 SKLSEWITSGGMVSAETPATASEECEKMLRMGDRVG*SGYDKKKLLLYTIISGYRRQID* 39
           S+L+EWIT+ GMVSAE  A ASEEC+KMLRMGDRVG + YDKK+LLLY IISG RR ID 
Sbjct: 378 SQLTEWITTRGMVSAEIAAVASEECDKMLRMGDRVGRAAYDKKRLLLYAIISGSRRHIDR 437

Query: 38  LLGDIATLFNTI 3
           LL D+ TLFNTI
Sbjct: 438 LLRDLPTLFNTI 449



 Score = 37.7 bits (86), Expect(2) = 6e-26
 Identities = 19/29 (65%), Positives = 20/29 (68%), Gaps = 8/29 (27%)
 Frame = -1

Query: 277 ASDARRQ--------QIYFCLRTGYYDEA 215
           A DARRQ        QIYFCLRTGYY+EA
Sbjct: 335 AGDARRQPPVDTTWQQIYFCLRTGYYEEA 363


>ref|XP_002881785.1| nucleoporin interacting component family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297327624|gb|EFH58044.1|
           nucleoporin interacting component family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 855

 Score =  105 bits (262), Expect(2) = 6e-26
 Identities = 51/70 (72%), Positives = 62/70 (88%)
 Frame = -3

Query: 212 LSEWITSGGMVSAETPATASEECEKMLRMGDRVG*SGYDKKKLLLYTIISGYRRQID*LL 33
           L+EWIT+ GMV+AE+ A ASEECEKMLRMGDR+G + YDKKKLLLYTIISG RRQ++ +L
Sbjct: 372 LTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKLLLYTIISGSRRQVERIL 431

Query: 32  GDIATLFNTI 3
            D++TLFNTI
Sbjct: 432 RDLSTLFNTI 441



 Score = 37.0 bits (84), Expect(2) = 6e-26
 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 8/29 (27%)
 Frame = -1

Query: 277 ASDARRQ--------QIYFCLRTGYYDEA 215
           ++DARRQ        QIYFCLRTGYY+EA
Sbjct: 327 STDARRQPPVDTTWQQIYFCLRTGYYEEA 355


>ref|XP_003557916.1| PREDICTED: uncharacterized protein At2g41620-like [Brachypodium
           distachyon]
          Length = 869

 Score =  102 bits (255), Expect(2) = 2e-25
 Identities = 52/70 (74%), Positives = 57/70 (81%)
 Frame = -3

Query: 212 LSEWITSGGMVSAETPATASEECEKMLRMGDRVG*SGYDKKKLLLYTIISGYRRQID*LL 33
           L+EWIT+ G VS+ET  TASEECEKMLRMGDR G  GYD+KKLLLY II G RRQID LL
Sbjct: 386 LAEWITTNGAVSSETALTASEECEKMLRMGDRPGRPGYDRKKLLLYAIICGCRRQIDRLL 445

Query: 32  GDIATLFNTI 3
            D+ TLFNTI
Sbjct: 446 KDLPTLFNTI 455



 Score = 38.1 bits (87), Expect(2) = 2e-25
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = -1

Query: 271 DARRQQIYFCLRTGYYDEA 215
           D   QQIYFCLRTGYYDEA
Sbjct: 351 DTTWQQIYFCLRTGYYDEA 369