BLASTX nr result
ID: Coptis25_contig00002742
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00002742 (1245 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABK95986.1| unknown [Populus trichocarpa] 318 2e-84 ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|2... 316 9e-84 ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, ch... 315 2e-83 ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|2... 313 4e-83 ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloropl... 311 3e-82 >gb|ABK95986.1| unknown [Populus trichocarpa] Length = 306 Score = 318 bits (814), Expect = 2e-84 Identities = 169/234 (72%), Positives = 192/234 (82%), Gaps = 7/234 (2%) Frame = -1 Query: 978 VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDE 799 ++MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG E Sbjct: 74 IRMSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGE 132 Query: 798 L-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHM 622 L KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHM Sbjct: 133 LGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHM 192 Query: 621 KGFNRLKVRXXXXXXXXXXXXXXXDF----DY--QLVRTKSFEMPPLTVAEALEQLELVH 460 KGFNRLKVR DY ++VRTK F+MPPLTV+EA+EQLE VH Sbjct: 193 KGFNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVH 252 Query: 459 HDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 298 HDFYGFR+EETGEINI+YKR GGYGLI+PKG G+AE++E LVVE A PS E Sbjct: 253 HDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 306 >ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|222868941|gb|EEF06072.1| predicted protein [Populus trichocarpa] Length = 231 Score = 316 bits (809), Expect = 9e-84 Identities = 169/232 (72%), Positives = 190/232 (81%), Gaps = 7/232 (3%) Frame = -1 Query: 972 MSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDEL- 796 MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG EL Sbjct: 1 MSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG 59 Query: 795 KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHMKG 616 KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHMKG Sbjct: 60 KGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKG 119 Query: 615 FNRLKVRXXXXXXXXXXXXXXXDF----DY--QLVRTKSFEMPPLTVAEALEQLELVHHD 454 FNRLKVR DY ++VRTK F+MPPLTV+EA+EQLE VHHD Sbjct: 120 FNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHD 179 Query: 453 FYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 298 FYGFR+EETGEINI+YKR GGYGLI+PKG G+AE++E LVVE A PS E Sbjct: 180 FYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 231 >ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis] gi|223536311|gb|EEF37962.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis] Length = 311 Score = 315 bits (807), Expect = 2e-83 Identities = 175/263 (66%), Positives = 203/263 (77%), Gaps = 14/263 (5%) Frame = -1 Query: 1044 TLYLSPQLEVSSS-----NKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVE 880 T +L+P L++ S+ NK+ R V+MSW+GP LSSVKLI QGK+L L+DTVKK+VE Sbjct: 52 TSFLNP-LKLGSNVKYFENKRGRR-SAVRMSWEGP-LSSVKLITQGKNLELTDTVKKHVE 108 Query: 879 DKVGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYG 703 DKVGKAVQKH+HLVREVDVRLSVRG E KG K+RRCEVTLFTKKHGV+RAEEDAE++Y Sbjct: 109 DKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYA 168 Query: 702 SIDLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDF------D 541 SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVR D Sbjct: 169 SIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDED 228 Query: 540 Y--QLVRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPK 367 Y ++VRTK F+MPPLTV+EA+EQL+ V HDFYGFRNEETGEINI+YKR GGYG+I+PK Sbjct: 229 YIDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPK 288 Query: 366 GGGKAEKIEDLVVEQAT*PSPLE 298 GKAEK+E +V+E A PS E Sbjct: 289 ENGKAEKLEPVVIEPAREPSIAE 311 >ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|222858512|gb|EEE96059.1| predicted protein [Populus trichocarpa] Length = 306 Score = 313 bits (803), Expect = 4e-83 Identities = 169/251 (67%), Positives = 193/251 (76%), Gaps = 11/251 (4%) Frame = -1 Query: 1038 YLSPQLEVSSSNKKNRTPQV-----VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDK 874 +L + + RTP VKMSWDGP L SVKLIIQGK+L L+DTVK++VEDK Sbjct: 50 FLGKNMSFIELGRTARTPLTHGGCSVKMSWDGP-LHSVKLIIQGKNLELTDTVKRHVEDK 108 Query: 873 VGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSI 697 VGKAVQKH+HLVREVDVRLSVRG EL KG ++RRCEVTLFT +HGVVRAEEDAE++Y SI Sbjct: 109 VGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASI 168 Query: 696 DLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDFDY-----QL 532 DLVSSIIQRKLRKIKEK+SDHGRHMKGFNRLKVR + ++ Sbjct: 169 DLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVPQVVEGDADEVSQQEVEDSIEEV 228 Query: 531 VRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKA 352 VRTK F+MPPLTV+EA+EQLE V HDFYGFRNEETGEINIVYKR GGYGLI+PKG +A Sbjct: 229 VRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEA 288 Query: 351 EKIEDLVVEQA 319 E++E LVVE A Sbjct: 289 ERLEPLVVEPA 299 >ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis vinifera] Length = 298 Score = 311 bits (796), Expect = 3e-82 Identities = 165/248 (66%), Positives = 197/248 (79%), Gaps = 6/248 (2%) Frame = -1 Query: 1023 LEVSSSNKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTH 844 L+++++ ++ + P V+MSWDGP LSSVKLI+QGK+L L+DTV+ +VE+KVGKAVQKH+H Sbjct: 53 LKLNATTRQTK-PLAVRMSWDGP-LSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSH 110 Query: 843 LVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRK 667 LVREVDVRLS+RG EL KG K+RRCEVTLFTKKHGVVRAEE AE+LYGSID+VSSIIQRK Sbjct: 111 LVREVDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRK 170 Query: 666 LRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDFD-----YQLVRTKSFEMPP 502 LRKIKEKDSDHGRHMKGFNRLKVR + ++VRTK F+MPP Sbjct: 171 LRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPP 230 Query: 501 LTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQ 322 LTV EA+EQLE V HDF+GFRNEETGEINI+YKR GGYGLI+PK GK E++E +VV+ Sbjct: 231 LTVPEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKS 290 Query: 321 AT*PSPLE 298 PS E Sbjct: 291 DREPSLAE 298