BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002742
         (1245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95986.1| unknown [Populus trichocarpa]                          318   2e-84
ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|2...   316   9e-84
ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, ch...   315   2e-83
ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|2...   313   4e-83
ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloropl...   311   3e-82

>gb|ABK95986.1| unknown [Populus trichocarpa]
          Length = 306

 Score =  318 bits (814), Expect = 2e-84
 Identities = 169/234 (72%), Positives = 192/234 (82%), Gaps = 7/234 (2%)
 Frame = -1

Query: 978 VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDE 799
           ++MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG E
Sbjct: 74  IRMSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGE 132

Query: 798 L-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHM 622
           L KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHM
Sbjct: 133 LGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHM 192

Query: 621 KGFNRLKVRXXXXXXXXXXXXXXXDF----DY--QLVRTKSFEMPPLTVAEALEQLELVH 460
           KGFNRLKVR                     DY  ++VRTK F+MPPLTV+EA+EQLE VH
Sbjct: 193 KGFNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVH 252

Query: 459 HDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 298
           HDFYGFR+EETGEINI+YKR  GGYGLI+PKG G+AE++E LVVE A  PS  E
Sbjct: 253 HDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 306


>ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|222868941|gb|EEF06072.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score =  316 bits (809), Expect = 9e-84
 Identities = 169/232 (72%), Positives = 190/232 (81%), Gaps = 7/232 (3%)
 Frame = -1

Query: 972 MSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDEL- 796
           MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG EL 
Sbjct: 1   MSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG 59

Query: 795 KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHMKG 616
           KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHMKG
Sbjct: 60  KGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKG 119

Query: 615 FNRLKVRXXXXXXXXXXXXXXXDF----DY--QLVRTKSFEMPPLTVAEALEQLELVHHD 454
           FNRLKVR                     DY  ++VRTK F+MPPLTV+EA+EQLE VHHD
Sbjct: 120 FNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHD 179

Query: 453 FYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 298
           FYGFR+EETGEINI+YKR  GGYGLI+PKG G+AE++E LVVE A  PS  E
Sbjct: 180 FYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 231


>ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
            putative [Ricinus communis] gi|223536311|gb|EEF37962.1|
            Plastid-specific 30S ribosomal protein 1, chloroplast
            precursor, putative [Ricinus communis]
          Length = 311

 Score =  315 bits (807), Expect = 2e-83
 Identities = 175/263 (66%), Positives = 203/263 (77%), Gaps = 14/263 (5%)
 Frame = -1

Query: 1044 TLYLSPQLEVSSS-----NKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVE 880
            T +L+P L++ S+     NK+ R    V+MSW+GP LSSVKLI QGK+L L+DTVKK+VE
Sbjct: 52   TSFLNP-LKLGSNVKYFENKRGRR-SAVRMSWEGP-LSSVKLITQGKNLELTDTVKKHVE 108

Query: 879  DKVGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYG 703
            DKVGKAVQKH+HLVREVDVRLSVRG E  KG K+RRCEVTLFTKKHGV+RAEEDAE++Y 
Sbjct: 109  DKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYA 168

Query: 702  SIDLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDF------D 541
            SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVR                       D
Sbjct: 169  SIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDED 228

Query: 540  Y--QLVRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPK 367
            Y  ++VRTK F+MPPLTV+EA+EQL+ V HDFYGFRNEETGEINI+YKR  GGYG+I+PK
Sbjct: 229  YIDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPK 288

Query: 366  GGGKAEKIEDLVVEQAT*PSPLE 298
              GKAEK+E +V+E A  PS  E
Sbjct: 289  ENGKAEKLEPVVIEPAREPSIAE 311


>ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|222858512|gb|EEE96059.1|
            predicted protein [Populus trichocarpa]
          Length = 306

 Score =  313 bits (803), Expect = 4e-83
 Identities = 169/251 (67%), Positives = 193/251 (76%), Gaps = 11/251 (4%)
 Frame = -1

Query: 1038 YLSPQLEVSSSNKKNRTPQV-----VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDK 874
            +L   +      +  RTP       VKMSWDGP L SVKLIIQGK+L L+DTVK++VEDK
Sbjct: 50   FLGKNMSFIELGRTARTPLTHGGCSVKMSWDGP-LHSVKLIIQGKNLELTDTVKRHVEDK 108

Query: 873  VGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSI 697
            VGKAVQKH+HLVREVDVRLSVRG EL KG ++RRCEVTLFT +HGVVRAEEDAE++Y SI
Sbjct: 109  VGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASI 168

Query: 696  DLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDFDY-----QL 532
            DLVSSIIQRKLRKIKEK+SDHGRHMKGFNRLKVR                 +      ++
Sbjct: 169  DLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVPQVVEGDADEVSQQEVEDSIEEV 228

Query: 531  VRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKA 352
            VRTK F+MPPLTV+EA+EQLE V HDFYGFRNEETGEINIVYKR  GGYGLI+PKG  +A
Sbjct: 229  VRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEA 288

Query: 351  EKIEDLVVEQA 319
            E++E LVVE A
Sbjct: 289  ERLEPLVVEPA 299


>ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis
            vinifera]
          Length = 298

 Score =  311 bits (796), Expect = 3e-82
 Identities = 165/248 (66%), Positives = 197/248 (79%), Gaps = 6/248 (2%)
 Frame = -1

Query: 1023 LEVSSSNKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTH 844
            L+++++ ++ + P  V+MSWDGP LSSVKLI+QGK+L L+DTV+ +VE+KVGKAVQKH+H
Sbjct: 53   LKLNATTRQTK-PLAVRMSWDGP-LSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSH 110

Query: 843  LVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRK 667
            LVREVDVRLS+RG EL KG K+RRCEVTLFTKKHGVVRAEE AE+LYGSID+VSSIIQRK
Sbjct: 111  LVREVDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRK 170

Query: 666  LRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXDFD-----YQLVRTKSFEMPP 502
            LRKIKEKDSDHGRHMKGFNRLKVR                 +      ++VRTK F+MPP
Sbjct: 171  LRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPP 230

Query: 501  LTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQ 322
            LTV EA+EQLE V HDF+GFRNEETGEINI+YKR  GGYGLI+PK  GK E++E +VV+ 
Sbjct: 231  LTVPEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKS 290

Query: 321  AT*PSPLE 298
               PS  E
Sbjct: 291  DREPSLAE 298