BLASTX nr result
ID: Coptis25_contig00002669
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00002669 (800 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2... 256 4e-66 ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su... 255 9e-66 ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri... 252 6e-65 gb|AFK35928.1| unknown [Lotus japonicus] 251 2e-64 gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guinee... 249 5e-64 >ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa] gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa] gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa] Length = 138 Score = 256 bits (654), Expect = 4e-66 Identities = 130/139 (93%), Positives = 136/139 (97%) Frame = -3 Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247 MSG EEEENAAELKIGD+FLKAKCLMNCEVALIL+ KYEQLQQMSDDPMNQVSQVFEKSL Sbjct: 1 MSG-EEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSL 59 Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67 QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH Sbjct: 60 QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119 Query: 66 EDDAIEKMLHDLSLIKKFE 10 +D+AIEKML+DLSLIKKFE Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138 >ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis vinifera] gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera] gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera] Length = 138 Score = 255 bits (651), Expect = 9e-66 Identities = 129/139 (92%), Positives = 136/139 (97%) Frame = -3 Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247 MSG EEEENAAELKIGDEFLKAKCLMNCEVA+IL+ KYEQLQQMSDDP+NQVSQVFEKSL Sbjct: 1 MSG-EEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSL 59 Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67 QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH Sbjct: 60 QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119 Query: 66 EDDAIEKMLHDLSLIKKFE 10 +D+AIEKML+DLSLIKKFE Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138 >ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis] gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis] Length = 138 Score = 252 bits (644), Expect = 6e-65 Identities = 128/139 (92%), Positives = 135/139 (97%) Frame = -3 Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247 MSG EEEENA+ELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQMS+DPMNQVSQVFEKSL Sbjct: 1 MSG-EEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSL 59 Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67 QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH Sbjct: 60 QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119 Query: 66 EDDAIEKMLHDLSLIKKFE 10 +D+AIEKML DLS+IKKFE Sbjct: 120 DDEAIEKMLTDLSMIKKFE 138 >gb|AFK35928.1| unknown [Lotus japonicus] Length = 138 Score = 251 bits (640), Expect = 2e-64 Identities = 128/139 (92%), Positives = 134/139 (96%) Frame = -3 Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247 MSG EEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSL Sbjct: 1 MSG-EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSL 59 Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67 QYVKRFSRY NPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA Sbjct: 60 QYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQ 119 Query: 66 EDDAIEKMLHDLSLIKKFE 10 +D+AIEKML+DLSLIKKFE Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138 >gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis] Length = 138 Score = 249 bits (636), Expect = 5e-64 Identities = 126/139 (90%), Positives = 134/139 (96%) Frame = -3 Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247 MSG EEEENAAELKIG+EFLKAKCLMNCEVALILDRKYEQLQQ+SDDP NQ+SQVFEKS+ Sbjct: 1 MSG-EEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSM 59 Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67 QYVKRFSRY N DAVRQVREILSRY+LAEFELCVLGNLCPETVEEAIAMVPSIK++GR H Sbjct: 60 QYVKRFSRYKNQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIH 119 Query: 66 EDDAIEKMLHDLSLIKKFE 10 EDDAIEKML+DLSLIKKFE Sbjct: 120 EDDAIEKMLNDLSLIKKFE 138