BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002669
         (800 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2...   256   4e-66
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su...   255   9e-66
ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri...   252   6e-65
gb|AFK35928.1| unknown [Lotus japonicus]                              251   2e-64
gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guinee...   249   5e-64

>ref|XP_002307132.1| predicted protein [Populus trichocarpa]
           gi|224096326|ref|XP_002310604.1| predicted protein
           [Populus trichocarpa] gi|222853507|gb|EEE91054.1|
           predicted protein [Populus trichocarpa]
           gi|222856581|gb|EEE94128.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score =  256 bits (654), Expect = 4e-66
 Identities = 130/139 (93%), Positives = 136/139 (97%)
 Frame = -3

Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247
           MSG EEEENAAELKIGD+FLKAKCLMNCEVALIL+ KYEQLQQMSDDPMNQVSQVFEKSL
Sbjct: 1   MSG-EEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSL 59

Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67
           QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH
Sbjct: 60  QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119

Query: 66  EDDAIEKMLHDLSLIKKFE 10
           +D+AIEKML+DLSLIKKFE
Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138


>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
           vinifera] gi|147856183|emb|CAN80281.1| hypothetical
           protein VITISV_017448 [Vitis vinifera]
           gi|302143481|emb|CBI22042.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score =  255 bits (651), Expect = 9e-66
 Identities = 129/139 (92%), Positives = 136/139 (97%)
 Frame = -3

Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247
           MSG EEEENAAELKIGDEFLKAKCLMNCEVA+IL+ KYEQLQQMSDDP+NQVSQVFEKSL
Sbjct: 1   MSG-EEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSL 59

Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67
           QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH
Sbjct: 60  QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119

Query: 66  EDDAIEKMLHDLSLIKKFE 10
           +D+AIEKML+DLSLIKKFE
Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138


>ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 138

 Score =  252 bits (644), Expect = 6e-65
 Identities = 128/139 (92%), Positives = 135/139 (97%)
 Frame = -3

Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247
           MSG EEEENA+ELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQMS+DPMNQVSQVFEKSL
Sbjct: 1   MSG-EEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSL 59

Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67
           QYVKRFSRY NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKT+GRAH
Sbjct: 60  QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH 119

Query: 66  EDDAIEKMLHDLSLIKKFE 10
           +D+AIEKML DLS+IKKFE
Sbjct: 120 DDEAIEKMLTDLSMIKKFE 138


>gb|AFK35928.1| unknown [Lotus japonicus]
          Length = 138

 Score =  251 bits (640), Expect = 2e-64
 Identities = 128/139 (92%), Positives = 134/139 (96%)
 Frame = -3

Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247
           MSG EEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSL
Sbjct: 1   MSG-EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSL 59

Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67
           QYVKRFSRY NPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRA 
Sbjct: 60  QYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQ 119

Query: 66  EDDAIEKMLHDLSLIKKFE 10
           +D+AIEKML+DLSLIKKFE
Sbjct: 120 DDEAIEKMLNDLSLIKKFE 138


>gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
          Length = 138

 Score =  249 bits (636), Expect = 5e-64
 Identities = 126/139 (90%), Positives = 134/139 (96%)
 Frame = -3

Query: 426 MSGQEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSL 247
           MSG EEEENAAELKIG+EFLKAKCLMNCEVALILDRKYEQLQQ+SDDP NQ+SQVFEKS+
Sbjct: 1   MSG-EEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSM 59

Query: 246 QYVKRFSRYTNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAH 67
           QYVKRFSRY N DAVRQVREILSRY+LAEFELCVLGNLCPETVEEAIAMVPSIK++GR H
Sbjct: 60  QYVKRFSRYKNQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIH 119

Query: 66  EDDAIEKMLHDLSLIKKFE 10
           EDDAIEKML+DLSLIKKFE
Sbjct: 120 EDDAIEKMLNDLSLIKKFE 138