BLASTX nr result
ID: Coptis25_contig00002650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002650
(1887 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1... 665 0.0
ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2... 660 0.0
emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera] 639 0.0
ref|XP_002525276.1| Chitin-inducible gibberellin-responsive prot... 629 e-177
ref|XP_002332364.1| GRAS family transcription factor [Populus tr... 619 e-174
>ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1 [Vitis vinifera]
Length = 494
Score = 665 bits (1715), Expect = 0.0
Identities = 350/507 (69%), Positives = 382/507 (75%)
Frame = +3
Query: 138 MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 317
MDTLFRLVSLQ ++EEC NFFMDE+DF
Sbjct: 1 MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56
Query: 318 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEQPEFTSFSPAPDLNLEFISSTTS 497
AFE EF SFSPA DL+LEF SS +
Sbjct: 57 SKHYYPYQQQTHPSTTTTPTTTNTSTPTHH----AFEPTEF-SFSPARDLHLEFNSS--A 109
Query: 498 STKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRITDS 677
S KWAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YFLQALFSR+TDS
Sbjct: 110 SGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDS 169
Query: 678 GERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGESKLHIID 857
GERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA +GESKLHIID
Sbjct: 170 GERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEGESKLHIID 229
Query: 858 ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKVMKEIGNRMEKF 1037
ISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG T G+ V K+MKEIGNRMEKF
Sbjct: 230 ISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKLMKEIGNRMEKF 287
Query: 1038 ARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVTGNRRDVVLSAF 1217
ARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+ LHSV GNRRD+V+S+F
Sbjct: 288 ARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAFGNRRDIVVSSF 347
Query: 1218 HRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRVYFESLDESFPRTSNERLMLER 1397
RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFRVY ESLDESFPRTSNERLMLER
Sbjct: 348 RRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTSNERLMLER 407
Query: 1398 AAGKALVDLVACQPSESNERRESATRWVNRLRTAEFXXXXXXXXXXXXXXXLLRRYKEGW 1577
AAG+A+VDLVAC PSES ERRE+ATRW RL + F LLRRYKEGW
Sbjct: 408 AAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRALLRRYKEGW 467
Query: 1578 SMIPCSDAGIFLAWKDQPVVWACAWKP 1658
SM SDAGIFL+WKDQPVVW AWKP
Sbjct: 468 SMTQSSDAGIFLSWKDQPVVWTSAWKP 494
>ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2 [Vitis vinifera]
Length = 509
Score = 660 bits (1704), Expect = 0.0
Identities = 350/518 (67%), Positives = 382/518 (73%), Gaps = 11/518 (2%)
Frame = +3
Query: 138 MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 317
MDTLFRLVSLQ ++EEC NFFMDE+DF
Sbjct: 1 MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56
Query: 318 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------AFEQPEFTSFSPAPD 464
AFE EF SFSPA D
Sbjct: 57 SKHYYPYQQQTHPSTTTTPTTTNTQTHPSTTTTPTTTNTSTPTHHAFEPTEF-SFSPARD 115
Query: 465 LNLEFISSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYF 644
L+LEF SS +S KWAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YF
Sbjct: 116 LHLEFNSS--ASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYF 173
Query: 645 LQALFSRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEA 824
LQALFSR+TDSGERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA
Sbjct: 174 LQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEA 233
Query: 825 FDGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKV 1004
+GESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG T G+ V K+
Sbjct: 234 LEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKL 291
Query: 1005 MKEIGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVT 1184
MKEIGNRMEKFARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+ LHSV
Sbjct: 292 MKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAF 351
Query: 1185 GNRRDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRVYFESLDESFP 1364
GNRRD+V+S+F RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFRVY ESLDESFP
Sbjct: 352 GNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFP 411
Query: 1365 RTSNERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAEFXXXXXXXXXXXXX 1544
RTSNERLMLERAAG+A+VDLVAC PSES ERRE+ATRW RL + F
Sbjct: 412 RTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDV 471
Query: 1545 XXLLRRYKEGWSMIPCSDAGIFLAWKDQPVVWACAWKP 1658
LLRRYKEGWSM SDAGIFL+WKDQPVVW AWKP
Sbjct: 472 RALLRRYKEGWSMTQSSDAGIFLSWKDQPVVWTSAWKP 509
>emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera]
Length = 480
Score = 639 bits (1649), Expect = 0.0
Identities = 336/515 (65%), Positives = 371/515 (72%), Gaps = 8/515 (1%)
Frame = +3
Query: 138 MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEECSNFFMDEDDFXXXX 317
MDTLFRLVSLQ ++EEC NFFMDE+DF
Sbjct: 1 MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQ----EDEECFNFFMDEEDFSSSS 56
Query: 318 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEQPEFTSFSPAPDLNLEFI----- 482
++Q S P P +
Sbjct: 57 SKHYYP-----------------------------YQQQTHPSSPPPPPPPTPALLLIMP 87
Query: 483 ---SSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQA 653
++ S WAS++LLETARAIADKNS+RVQQLMWMLNELSSPYGDTDQKLA+YFLQA
Sbjct: 88 LSPPNSLSPLPWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQA 147
Query: 654 LFSRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDG 833
LFSR+TDSGERCYRTL SA+EK CSFE TRKMVLKFQEVSPWTTFGHVA NGAI+EA +G
Sbjct: 148 LFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEG 207
Query: 834 ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGGPTSGVTAVHKVMKE 1013
ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVT+KAG T G+ V K+MKE
Sbjct: 208 ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAG--TGGMAPVQKLMKE 265
Query: 1014 IGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGVTGNR 1193
IGNRMEKFARLMGVPFKFNV+HH GDLS LNL++LDIKDDEALAVNC+ LHSV GNR
Sbjct: 266 IGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAVGNR 325
Query: 1194 RDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRVYFESLDESFPRTS 1373
RD+V+S+F RL P+I+TVVEEEADLDVGVDGF+FVKGFQECL+WFRVY ESLDESFPRTS
Sbjct: 326 RDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTS 385
Query: 1374 NERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAEFXXXXXXXXXXXXXXXL 1553
NERLMLERAAG+A+VDLVAC PSES ERRE+ATRW RL + F L
Sbjct: 386 NERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRAL 445
Query: 1554 LRRYKEGWSMIPCSDAGIFLAWKDQPVVWACAWKP 1658
LRRYKEGWSM SDAGIFL+WKDQPVVW AWKP
Sbjct: 446 LRRYKEGWSMTQSSDAGIFLSWKDQPVVWTSAWKP 480
>ref|XP_002525276.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus
communis] gi|223535434|gb|EEF37104.1| Chitin-inducible
gibberellin-responsive protein, putative [Ricinus
communis]
Length = 512
Score = 629 bits (1621), Expect = e-177
Identities = 325/519 (62%), Positives = 369/519 (71%), Gaps = 12/519 (2%)
Frame = +3
Query: 138 MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QEEECSNFFMDED 299
MDTLFRLVSLQ ++EEC NFFMDE+
Sbjct: 1 MDTLFRLVSLQQQQSDQSFNNSTSRTSSSSRSSRQNNHHHHHHQYQQEDEECFNFFMDEE 60
Query: 300 DFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEQPEFTSFSPAPDLNLEF 479
DF E + SFSP+ DLN +F
Sbjct: 61 DFSSSSSKHYYPYHHQQQQQHTTATTTTTTVTTPNTTTS-TLESTDHFSFSPSHDLNFDF 119
Query: 480 ISSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALF 659
S++WA+D+LLETARAIADKNS+RVQQLMWMLNEL SPYGD D+KLASYFLQALF
Sbjct: 120 ------SSRWATDILLETARAIADKNSARVQQLMWMLNELGSPYGDIDKKLASYFLQALF 173
Query: 660 SRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDGES 839
SR+TDSGERCYRTL SA++K CSFE TRKMVLKFQEVSPWTTFGHV+ NGAI+EAF+GES
Sbjct: 174 SRMTDSGERCYRTLASASDKTCSFESTRKMVLKFQEVSPWTTFGHVSCNGAIMEAFEGES 233
Query: 840 KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKA------GGPTSGVTAVHK 1001
KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTT+V +K GG G+ + K
Sbjct: 234 KLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTIVASKTNGGGGGGGGNCGLVSAQK 293
Query: 1002 VMKEIGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSVGV 1181
VMKEIG+RMEKFARLMGVPFKFNVIHH GDL +LNLS+LDIK+DEALA+NCI +LHSV
Sbjct: 294 VMKEIGSRMEKFARLMGVPFKFNVIHHAGDLCDLNLSELDIKEDEALAINCIGSLHSVTT 353
Query: 1182 TGNRRDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRVYFESLDESF 1361
NRRD ++S F RLQP+I+T+VEEEADLDVG+DG +FV+GFQECL+WFRVYFESL+ESF
Sbjct: 354 VANRRDYIISNFRRLQPRIITIVEEEADLDVGIDGLDFVRGFQECLRWFRVYFESLEESF 413
Query: 1362 PRTSNERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAEFXXXXXXXXXXXX 1541
RTSNERLMLER+AG+A+VDLVACQPSES ERRE ATRW +RL +
Sbjct: 414 SRTSNERLMLERSAGRAIVDLVACQPSESIERREKATRWSSRLHACGYSPILFSDEVCDD 473
Query: 1542 XXXLLRRYKEGWSMIPCSDAGIFLAWKDQPVVWACAWKP 1658
LLRRYKEGWSM AGIFL WK+QPVVWA AWKP
Sbjct: 474 VRALLRRYKEGWSMTQSGHAGIFLCWKEQPVVWASAWKP 512
>ref|XP_002332364.1| GRAS family transcription factor [Populus trichocarpa]
gi|222874681|gb|EEF11812.1| GRAS family transcription
factor [Populus trichocarpa]
Length = 510
Score = 619 bits (1595), Expect = e-174
Identities = 323/521 (61%), Positives = 367/521 (70%), Gaps = 14/521 (2%)
Frame = +3
Query: 138 MDTLFRLVSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---QEEECSNFFMDEDDFX 308
MDTLFRLVSLQ ++EEC NFFMDE+DF
Sbjct: 1 MDTLFRLVSLQQQSEQSFNSTSRTSSSSRSSRQNNNHHHHHYQQEDEECFNFFMDEEDFS 60
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AFEQPEFTSFSPAPDLNL 473
+ +F SFSP+ DLN
Sbjct: 61 SSSSKHYYPPYHHNQQQQHQHQTTTTTPTTTTTNTSTPSTHHVLDSADF-SFSPSHDLNF 119
Query: 474 EFISSTTSSTKWASDLLLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQA 653
EF S KW +D+LLE+A AIADKNS+R+QQLMWMLNEL SPYGDT+QKLASYFLQA
Sbjct: 120 EF------SGKWVTDILLESAHAIADKNSARLQQLMWMLNELGSPYGDTEQKLASYFLQA 173
Query: 654 LFSRITDSGERCYRTLTSATEKNCSFELTRKMVLKFQEVSPWTTFGHVASNGAILEAFDG 833
LFSR+ DSGERCYRTL SA+EK CSF+ TRKMVLKFQEVSPWTTFGHV+ NGAI+EAF+G
Sbjct: 174 LFSRMNDSGERCYRTLASASEKTCSFDSTRKMVLKFQEVSPWTTFGHVSCNGAIMEAFEG 233
Query: 834 ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTNKAGG------PTSGVTAV 995
ESKLHIIDISNTYCTQWPTLLEALATRTDETPHL+LTTVV +K+ G T G+ +V
Sbjct: 234 ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLKLTTVVASKSSGNNIGLTSTGGLASV 293
Query: 996 HKVMKEIGNRMEKFARLMGVPFKFNVIHHVGDLSELNLSDLDIKDDEALAVNCINTLHSV 1175
HKVMKEIGNRMEKFARLMGVPFKFNVIHH GDL +LNL++LD+KDDEALA+NC+ LHS+
Sbjct: 294 HKVMKEIGNRMEKFARLMGVPFKFNVIHHAGDLCDLNLAELDVKDDEALAINCVGALHSI 353
Query: 1176 GVTGNRRDVVLSAFHRLQPKIVTVVEEEADLDVGVDGFEFVKGFQECLKWFRVYFESLDE 1355
RRD V+S+F LQP+I+TVVEEEADL DG +FVKGFQECL+WFRVYFESLDE
Sbjct: 354 TPASRRRDYVISSFRTLQPRIITVVEEEADL----DGLDFVKGFQECLRWFRVYFESLDE 409
Query: 1356 SFPRTSNERLMLERAAGKALVDLVACQPSESNERRESATRWVNRLRTAEFXXXXXXXXXX 1535
SFPRTSNE+LMLERAAG+A+VDLVAC PS+S ERRE+ATRW RL + F
Sbjct: 410 SFPRTSNEQLMLERAAGRAIVDLVACPPSDSIERRETATRWSGRLHSCGFSPIIFSDEVC 469
Query: 1536 XXXXXLLRRYKEGWSMIPCSDAGIFLAWKDQPVVWACAWKP 1658
LLRRYKEGWSM C DAGIFL WK+QPVVWA AW+P
Sbjct: 470 DDVRALLRRYKEGWSMTQCGDAGIFLCWKEQPVVWASAWRP 510