BLASTX nr result

ID: Coptis25_contig00002587 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002587
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004151965.1| PREDICTED: probable histone H2A.1-like [Cucu...   201   2e-49
ref|XP_002316965.1| histone H2 [Populus trichocarpa] gi|22286003...   196   6e-48
gb|ABK94182.1| unknown [Populus trichocarpa]                          196   6e-48
ref|XP_002282795.1| PREDICTED: histone H2A.6 isoform 1 [Vitis vi...   196   6e-48
ref|XP_002272843.1| PREDICTED: probable histone H2A.3 [Vitis vin...   195   1e-47

>ref|XP_004151965.1| PREDICTED: probable histone H2A.1-like [Cucumis sativus]
           gi|449522341|ref|XP_004168185.1| PREDICTED: probable
           histone H2A.1-like [Cucumis sativus]
          Length = 135

 Score =  201 bits (510), Expect = 2e-49
 Identities = 107/134 (79%), Positives = 110/134 (82%), Gaps = 1/134 (0%)
 Frame = +3

Query: 279 MAGRGKTLGSGA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXX 455
           MAGRGKTLGSGA KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP          
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 456 XXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNLLLPK 635
                   GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 636 KTSTKAASSAGDDE 677
           KT T + ++ GDDE
Sbjct: 121 KTGTSSKNAGGDDE 134


>ref|XP_002316965.1| histone H2 [Populus trichocarpa] gi|222860030|gb|EEE97577.1|
           histone H2 [Populus trichocarpa]
          Length = 133

 Score =  196 bits (498), Expect = 6e-48
 Identities = 106/133 (79%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
 Frame = +3

Query: 279 MAGRGKTLGSG-AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXX 455
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP          
Sbjct: 1   MAGRGKTLGSGTAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 456 XXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNLLLPK 635
                   GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 636 KTSTKAASSAGDD 674
           KT   + +SA DD
Sbjct: 121 KTGGSSKASADDD 133


>gb|ABK94182.1| unknown [Populus trichocarpa]
          Length = 134

 Score =  196 bits (498), Expect = 6e-48
 Identities = 106/133 (79%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
 Frame = +3

Query: 279 MAGRGKTLGSG-AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXX 455
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP          
Sbjct: 1   MAGRGKTLGSGTAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 456 XXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNLLLPK 635
                   GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 636 KTSTKAASSAGDD 674
           KT   + +SA DD
Sbjct: 121 KTGGSSKASADDD 133


>ref|XP_002282795.1| PREDICTED: histone H2A.6 isoform 1 [Vitis vinifera]
           gi|302143197|emb|CBI20492.3| unnamed protein product
           [Vitis vinifera]
          Length = 135

 Score =  196 bits (498), Expect = 6e-48
 Identities = 105/134 (78%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
 Frame = +3

Query: 279 MAGRGKTLGSGA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXX 455
           MAGRGKTLGSGA KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP          
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 456 XXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNLLLPK 635
                   GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 636 KTSTKAASSAGDDE 677
           K    + +S GDD+
Sbjct: 121 KAGGSSKASGGDDD 134


>ref|XP_002272843.1| PREDICTED: probable histone H2A.3 [Vitis vinifera]
           gi|296086995|emb|CBI33257.3| unnamed protein product
           [Vitis vinifera]
          Length = 135

 Score =  195 bits (495), Expect = 1e-47
 Identities = 103/134 (76%), Positives = 110/134 (82%), Gaps = 1/134 (0%)
 Frame = +3

Query: 279 MAGRGKTLGSGA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXX 455
           MAGRGK+LG+GA KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP          
Sbjct: 1   MAGRGKSLGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 456 XXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGAVTIANGGVMPNIHNLLLPK 635
                   GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG+VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPNIHNLLLPK 120

Query: 636 KTSTKAASSAGDDE 677
           K+S+    +A DD+
Sbjct: 121 KSSSSKGGAAADDD 134


Top