BLASTX nr result

ID: Coptis25_contig00002569 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002569
         (1136 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634429.1| PREDICTED: LOW QUALITY PROTEIN: F-box protei...   444   e-122
ref|XP_003523431.1| PREDICTED: F-box protein 7-like [Glycine max]     442   e-122
ref|NP_001239713.1| uncharacterized protein LOC100786704 [Glycin...   442   e-122
gb|AFK44794.1| unknown [Lotus japonicus]                              439   e-121
ref|XP_004165186.1| PREDICTED: F-box protein 7-like [Cucumis sat...   439   e-121

>ref|XP_003634429.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein 7-like [Vitis
           vinifera]
          Length = 327

 Score =  444 bits (1143), Expect = e-122
 Identities = 221/325 (68%), Positives = 245/325 (75%), Gaps = 29/325 (8%)
 Frame = -3

Query: 999 EADPLLGLRPWLVTQRPWLDLYGVHVKPVV------SKPNYDPALIHRCLPDELLFEIFV 838
           EA+  L    + VT RPWLDLYGVHV+PV       SKP  DPALIHRCLPDELL E+F 
Sbjct: 14  EAESRLRTVQYFVTHRPWLDLYGVHVRPVAPFGSASSKPFVDPALIHRCLPDELLSEVFA 73

Query: 837 RMTPHGLGRGACVCRKWRYTIRNPVFWRTACLKAWQASGPIENYKIVQSKYEWSWRKMWL 658
           RMTP+ LGR ACVCRKWRYTIRNPVFWR+ACLKAWQ SG +ENYKI+QS+YE SWRKMWL
Sbjct: 74  RMTPYTLGRAACVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKILQSRYESSWRKMWL 133

Query: 657 LRPRVRTDGIYVSRNTYIHVGVAEWKITNPVHLVCYFRYMRFFPSGRFFYKNSSQIVKDV 478
           LRPRVRTDG+YVSRNTYI  GVAEW++TNPVH+VCYFRY+RFFPSGRF YKNSSQ VKDV
Sbjct: 134 LRPRVRTDGLYVSRNTYIRAGVAEWRVTNPVHVVCYFRYIRFFPSGRFLYKNSSQKVKDV 193

Query: 477 AKSMTFHASKADSIPSRKREEADSVFSGHYTLLQDEVDAAFLYPGLHPTVLRLQLRLRGT 298
            K M   ASK           AD VFSGHYTL  D+++AA LYPG+ PTV R++LRLRGT
Sbjct: 194 VKCMNSRASK-----------ADCVFSGHYTLSDDKIEAAVLYPGMRPTVWRIRLRLRGT 242

Query: 297 MVGANNRMDIISLVTS-----------------------KETHNPDVPAVSHRRGLNPFV 187
             GANNRMD++SLVTS                        ETHNPDVPAVSH+RGL  FV
Sbjct: 243 TAGANNRMDLLSLVTSGVSDNEVNGPDEDILGVVEGWEEDETHNPDVPAVSHKRGLKAFV 302

Query: 186 FVPFEEVETSVLNLPVDKMDYYLPG 112
           FVPFEEVETS LNLPVDKMDYY+ G
Sbjct: 303 FVPFEEVETSDLNLPVDKMDYYVAG 327


>ref|XP_003523431.1| PREDICTED: F-box protein 7-like [Glycine max]
          Length = 329

 Score =  442 bits (1137), Expect = e-122
 Identities = 218/330 (66%), Positives = 252/330 (76%), Gaps = 31/330 (9%)
 Frame = -3

Query: 1008 MNSEADPLLGLRP--WLVTQRPWLDLYGVHVKPVVS------KPNYDPALIHRCLPDELL 853
            ++SE + +L L    + VT+RPWLDLYGV+V+PV        +P  DPALIHR LPDELL
Sbjct: 11   VSSELESVLRLETVNYFVTRRPWLDLYGVNVRPVAPVGSASRRPYVDPALIHRSLPDELL 70

Query: 852  FEIFVRMTPHGLGRGACVCRKWRYTIRNPVFWRTACLKAWQASGPIENYKIVQSKYEWSW 673
            FE+F RMTP+ LGR +CVCRKW+YTIRNPVFWR ACLKAWQ SG +ENY+I+QSKY+ SW
Sbjct: 71   FEVFARMTPYDLGRASCVCRKWKYTIRNPVFWRNACLKAWQLSGIVENYRILQSKYDGSW 130

Query: 672  RKMWLLRPRVRTDGIYVSRNTYIHVGVAEWKITNPVHLVCYFRYMRFFPSGRFFYKNSSQ 493
            RKMWL RPR+RTDG+YVSRNTYI  GVAEWKITNPVH+VCYFRY+RFFPSGRF YKNSSQ
Sbjct: 131  RKMWLSRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRFLYKNSSQ 190

Query: 492  IVKDVAKSMTFHASKADSIPSRKREEADSVFSGHYTLLQDEVDAAFLYPGLHPTVLRLQL 313
             VKDVAK M F +SK           AD VF GHYTL  D+V+AA LYPG+ PTVLR++L
Sbjct: 191  KVKDVAKCMNFRSSK-----------ADCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRL 239

Query: 312  RLRGTMVGANNRMDIISLVTS-----------------------KETHNPDVPAVSHRRG 202
            R+RGT  GANNRMD+ISLVTS                        ETHNPDVPAVSH+RG
Sbjct: 240  RIRGTTSGANNRMDLISLVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRG 299

Query: 201  LNPFVFVPFEEVETSVLNLPVDKMDYYLPG 112
            + PFVFVPFEEVETSVLNLPV+KMDY++PG
Sbjct: 300  MTPFVFVPFEEVETSVLNLPVEKMDYFVPG 329


>ref|NP_001239713.1| uncharacterized protein LOC100786704 [Glycine max]
            gi|255635177|gb|ACU17944.1| unknown [Glycine max]
          Length = 329

 Score =  442 bits (1137), Expect = e-122
 Identities = 217/330 (65%), Positives = 252/330 (76%), Gaps = 31/330 (9%)
 Frame = -3

Query: 1008 MNSEADPLLGLRP--WLVTQRPWLDLYGVHVKPVVS------KPNYDPALIHRCLPDELL 853
            ++SE + +L L+   + VT+RPWLDLYGV+V+PV        +P  DPALIHR LPDELL
Sbjct: 11   VSSELESVLRLKTVNYFVTRRPWLDLYGVNVRPVAPVGSASRRPYVDPALIHRSLPDELL 70

Query: 852  FEIFVRMTPHGLGRGACVCRKWRYTIRNPVFWRTACLKAWQASGPIENYKIVQSKYEWSW 673
            FE+F RMTP+ LG+ +CVCRKW+YTIRNPVFWR ACLKAWQ  G +ENYKI+QSKY+ SW
Sbjct: 71   FEVFARMTPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLFGIVENYKILQSKYDGSW 130

Query: 672  RKMWLLRPRVRTDGIYVSRNTYIHVGVAEWKITNPVHLVCYFRYMRFFPSGRFFYKNSSQ 493
            RKMWLLRPR+RTDG+YVSRNTYI  GVAEWKITNPVH+VCYFRY+RFFPSGRF YKNSSQ
Sbjct: 131  RKMWLLRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRFLYKNSSQ 190

Query: 492  IVKDVAKSMTFHASKADSIPSRKREEADSVFSGHYTLLQDEVDAAFLYPGLHPTVLRLQL 313
             +KDVAK M F +SK            D VF GHYTL  D+V+AA LYPG+ PTVLR++L
Sbjct: 191  KIKDVAKCMNFRSSK-----------IDCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRL 239

Query: 312  RLRGTMVGANNRMDIISLVTS-----------------------KETHNPDVPAVSHRRG 202
            RLRGT  GANNRMD+ISLVTS                        ETHNPDVPAVSH+RG
Sbjct: 240  RLRGTTTGANNRMDLISLVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRG 299

Query: 201  LNPFVFVPFEEVETSVLNLPVDKMDYYLPG 112
            + PFVFVPFEEVETSVLNLPV+KMDY++PG
Sbjct: 300  MTPFVFVPFEEVETSVLNLPVEKMDYFVPG 329


>gb|AFK44794.1| unknown [Lotus japonicus]
          Length = 329

 Score =  439 bits (1130), Expect = e-121
 Identities = 217/329 (65%), Positives = 250/329 (75%), Gaps = 31/329 (9%)
 Frame = -3

Query: 1005 NSEADPLLGLRP--WLVTQRPWLDLYGVHVKPVVS------KPNYDPALIHRCLPDELLF 850
            +SE + +L L+   + VT+RPWLDLYG+ V+PV        KP  D ALIHRCLPDELLF
Sbjct: 12   SSELESILRLKTVDYFVTRRPWLDLYGIKVRPVAPFGSISRKPYVDSALIHRCLPDELLF 71

Query: 849  EIFVRMTPHGLGRGACVCRKWRYTIRNPVFWRTACLKAWQASGPIENYKIVQSKYEWSWR 670
            E+F RMTP+ +G+ +CVCRKW+YTIRNPVFWR ACLKAWQ SG +ENYKI+QSKY+ SWR
Sbjct: 72   EVFARMTPYDMGKASCVCRKWKYTIRNPVFWRHACLKAWQFSGVVENYKILQSKYDGSWR 131

Query: 669  KMWLLRPRVRTDGIYVSRNTYIHVGVAEWKITNPVHLVCYFRYMRFFPSGRFFYKNSSQI 490
            KMWLLRPR+RTDG+YVSRNTYI  GVAEWKITNPVH+VCYFRY+RFFPSGRF YKNSSQ 
Sbjct: 132  KMWLLRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYIRFFPSGRFLYKNSSQK 191

Query: 489  VKDVAKSMTFHASKADSIPSRKREEADSVFSGHYTLLQDEVDAAFLYPGLHPTVLRLQLR 310
            VKDV K M F +SK           A+ VF G+YTL  D+V+AA LYPGL PTVLR++LR
Sbjct: 192  VKDVVKCMNFRSSK-----------AECVFGGNYTLSDDKVEAAVLYPGLRPTVLRIRLR 240

Query: 309  LRGTMVGANNRMDIISLVTS-----------------------KETHNPDVPAVSHRRGL 199
            LRGT  GANNRMD+ISLVTS                        ETHNPDVPAVSH+RG+
Sbjct: 241  LRGTATGANNRMDLISLVTSGVNSSEASAPEEDILGVVDGWQDDETHNPDVPAVSHKRGM 300

Query: 198  NPFVFVPFEEVETSVLNLPVDKMDYYLPG 112
             PFVFVPFEEVE SVLNLPV+KMDYY+PG
Sbjct: 301  APFVFVPFEEVEASVLNLPVEKMDYYVPG 329


>ref|XP_004165186.1| PREDICTED: F-box protein 7-like [Cucumis sativus]
          Length = 327

 Score =  439 bits (1128), Expect = e-121
 Identities = 211/315 (66%), Positives = 241/315 (76%), Gaps = 29/315 (9%)
 Frame = -3

Query: 969 WLVTQRPWLDLYGVHVKPVVS------KPNYDPALIHRCLPDELLFEIFVRMTPHGLGRG 808
           + VT+RPWLDLYGV+V+PV        +P  DPALIHRCLPDELLFE+F RMTP+ LGR 
Sbjct: 24  YFVTKRPWLDLYGVNVRPVAPFGSSSRQPFVDPALIHRCLPDELLFEVFARMTPYDLGRA 83

Query: 807 ACVCRKWRYTIRNPVFWRTACLKAWQASGPIENYKIVQSKYEWSWRKMWLLRPRVRTDGI 628
           +CVCRKWRYTIRNPVFWR ACLKAWQ SG +ENYK +QS Y+ SWRKMWLLRPR+RTDG+
Sbjct: 84  SCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFLQSMYDGSWRKMWLLRPRIRTDGL 143

Query: 627 YVSRNTYIHVGVAEWKITNPVHLVCYFRYMRFFPSGRFFYKNSSQIVKDVAKSMTFHASK 448
           YVSRNTYI  G+AEWKITNPVHLVCYFRY+RFFPSGRF YKNSSQ +KDVAK M F ASK
Sbjct: 144 YVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVAKCMNFRASK 203

Query: 447 ADSIPSRKREEADSVFSGHYTLLQDEVDAAFLYPGLHPTVLRLQLRLRGTMVGANNRMDI 268
           AD I           F GHYTL  D+V+AA LY G  PTVLR+++RLRGT  GANNRMD+
Sbjct: 204 ADCI-----------FGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLRGTSTGANNRMDL 252

Query: 267 ISLVTS-----------------------KETHNPDVPAVSHRRGLNPFVFVPFEEVETS 157
           ++LVTS                        ETHNPDVPAVSH+RGL PF+FVPF++VETS
Sbjct: 253 LTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETS 312

Query: 156 VLNLPVDKMDYYLPG 112
            LNLPVDKMDY++PG
Sbjct: 313 ELNLPVDKMDYFVPG 327


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