BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002562
         (701 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...   294   1e-77
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]   294   1e-77
ref|XP_002519997.1| pentatricopeptide repeat-containing protein,...   287   1e-75
ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|2...   286   3e-75
ref|XP_002327945.1| predicted protein [Populus trichocarpa] gi|2...   276   4e-72

>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  294 bits (752), Expect = 1e-77
 Identities = 146/231 (63%), Positives = 181/231 (78%)
 Frame = +3

Query: 9    ELERESLFAIMNSYSLIGKRMEALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAME 188
            EL+RE+L +I+ SY   G+ +EA  LLD LRE    SH LI EA I++LCK H++  A+ 
Sbjct: 602  ELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALR 661

Query: 189  QYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIY 368
            +Y  ++ FGL  GS +MYESL+ CCE  E FAEASQ+++DM+F G+EPS+ LYRS+V  Y
Sbjct: 662  EYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTY 721

Query: 369  CKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVD 548
            CK+GFPETAH+L+DQAE    L +D +I+  +IE YGKLKL Q+AESLVG LR K + VD
Sbjct: 722  CKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVD 781

Query: 549  RKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLMQALIVDER 701
            RKVWNALIHAYAASG YE+ARA+FNTM+RDGPSPTVDSVNGLMQALIVD R
Sbjct: 782  RKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGR 832



 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 52/229 (22%), Positives = 108/229 (47%), Gaps = 5/229 (2%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREK--VPKSHDLIAEASIVLLCKD---HE 170
            F++ + S+  ++++++  G   E   +   ++     P  H  +    I LL K     +
Sbjct: 848  FKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH--LYRIMIGLLAKGKRVRD 905

Query: 171  VDAAMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYR 350
            V+A + +   ++     K   S++ S++K       F +  QVY  ++  G++P E  Y 
Sbjct: 906  VEAMVSEMEVARF----KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYN 961

Query: 351  SLVFIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRL 530
            +L+ +YC+   PE    L+ +   +  L+     Y  +I  +GKL++ ++AE L   L  
Sbjct: 962  TLILMYCRDRRPEEGLSLMHEMRRVG-LEPKLDTYKSLISAFGKLQMVEQAEELFEGLLS 1020

Query: 531  KYSTVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLM 677
            K   +DR  ++ ++  +  SG + +A  +   M   G  PT+ +++ LM
Sbjct: 1021 KECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1069


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  294 bits (752), Expect = 1e-77
 Identities = 146/231 (63%), Positives = 181/231 (78%)
 Frame = +3

Query: 9    ELERESLFAIMNSYSLIGKRMEALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAME 188
            EL+RE+L +I+ SY   G+ +EA  LLD LRE    SH LI EA I++LCK H++  A+ 
Sbjct: 634  ELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALR 693

Query: 189  QYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIY 368
            +Y  ++ FGL  GS +MYESL+ CCE  E FAEASQ+++DM+F G+EPS+ LYRS+V  Y
Sbjct: 694  EYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTY 753

Query: 369  CKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVD 548
            CK+GFPETAH+L+DQAE    L +D +I+  +IE YGKLKL Q+AESLVG LR K + VD
Sbjct: 754  CKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVD 813

Query: 549  RKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLMQALIVDER 701
            RKVWNALIHAYAASG YE+ARA+FNTM+RDGPSPTVDSVNGLMQALIVD R
Sbjct: 814  RKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGR 864



 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 51/226 (22%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREK--VPKSHDLIAEASIVLLCKDHEVDA 179
            F++ + S+  ++++++  G   E   +   ++     P  H  +    I LL K   V  
Sbjct: 880  FKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH--LYRIMIGLLAKGKRVRD 937

Query: 180  AMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLV 359
                 +  ++    K   S++ S++K       F +  QVY  ++  G++P E  Y +L+
Sbjct: 938  VEAMVSEMEVAXF-KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 996

Query: 360  FIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYS 539
             +YC+   PE    L+ +   +  L+     Y  +I  +GKL++ ++AE L   L  K  
Sbjct: 997  LMYCRDRRPEEGLSLMHEMRRVG-LEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKEC 1055

Query: 540  TVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLM 677
             +DR  ++ ++  +  SG + +A  +   M   G  PT+ +++ LM
Sbjct: 1056 KLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1101


>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1429

 Score =  287 bits (735), Expect = 1e-75
 Identities = 144/231 (62%), Positives = 186/231 (80%)
 Frame = +3

Query: 9    ELERESLFAIMNSYSLIGKRMEALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAME 188
            E++ E+L +I++SYS  G++ EAL LL  L+  V KS+ L+AEASIV LCK  ++DAA++
Sbjct: 590  EIDSENLLSILSSYSSSGRQAEALDLLQFLKGHVSKSNQLVAEASIVTLCKAKQLDAALK 649

Query: 189  QYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIY 368
            +YN+++ F    GSC+MYESLI+CCE  E  AEASQ+++DM+F G++PS+SLYRS+V +Y
Sbjct: 650  EYNDTREFDWFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMY 709

Query: 369  CKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVD 548
            CK+GFPETAH+L+D AE      +  +I V +IETYGKLKL Q+AESLVG LR + + VD
Sbjct: 710  CKMGFPETAHYLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVD 769

Query: 549  RKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLMQALIVDER 701
            RKVWNALI AYAASG YEQARAVFNTM+RDGPSPTVDS+NGL+QALIVD R
Sbjct: 770  RKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 820



 Score = 79.0 bits (193), Expect = 9e-13
 Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 2/226 (0%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREK--VPKSHDLIAEASIVLLCKDHEVDA 179
            F++ + S+  I+++++ +    EA  +   ++     P  H  +    I LLCK   V  
Sbjct: 836  FQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMH--LYRIMIGLLCKGKRVRD 893

Query: 180  AMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLV 359
                    +  G  +   S++ S+++     + F +  Q+Y  +K  G++P E  Y +L+
Sbjct: 894  VEAMVTEMEEAGF-RPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI 952

Query: 360  FIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYS 539
             +YC+   PE    L+ +   +  L+     Y  +I  +GK +L   AE L  +L  K S
Sbjct: 953  VMYCRDHRPEEGCSLMHEMRRIG-LEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGS 1011

Query: 540  TVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLM 677
             +DR  ++ ++  Y  SG + +A  + + M   G  PT+ +++ LM
Sbjct: 1012 KLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLM 1057


>ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|222852729|gb|EEE90276.1|
            predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  286 bits (732), Expect = 3e-75
 Identities = 138/232 (59%), Positives = 187/232 (80%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAM 185
            FE++RE+L +I++SYS  G+  EAL LL+ L+E  P+S  +I EA +V+LCK  ++DAA+
Sbjct: 633  FEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEALVVMLCKAQQLDAAL 692

Query: 186  EQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFI 365
            ++Y+N++  G + GS +M+ESLI+CC   E   EASQV++DM+FCG++ SESLY S+V +
Sbjct: 693  KEYSNNRELGFT-GSFTMFESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLL 751

Query: 366  YCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTV 545
            YCK+GFPETAHHL+D AES   L N+ ++YV++IE YG+LKL Q+AES+ G LR +  TV
Sbjct: 752  YCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITV 811

Query: 546  DRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLMQALIVDER 701
            DRKVWNALI AYAASG YE+ARA+FNTM+RDGPSPTVD++NGL+QALIVD R
Sbjct: 812  DRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGR 863



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 3/227 (1%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREK--VPKSHDLIAEASIVLLCKD-HEVD 176
            F++ + S+  ++++++  G   E   +   ++     P  H     A ++   K   +V+
Sbjct: 879  FKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVE 938

Query: 177  AAMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSL 356
            A + +   +      K   S++ S++K     E F +  QVY  +K  G+EP E  Y +L
Sbjct: 939  AMLSEMEEAGF----KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTL 994

Query: 357  VFIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKY 536
            + +YC+   PE    L+ +      L+     Y  ++ ++GK +L ++AE L  +L+ K 
Sbjct: 995  IVMYCRDHRPEEGFSLMHEMRVAG-LEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKG 1053

Query: 537  STVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLM 677
              +DR  ++ ++  Y  SG + +A  +F+ M   G  PT+ +++ LM
Sbjct: 1054 CKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLM 1100


>ref|XP_002327945.1| predicted protein [Populus trichocarpa] gi|222837354|gb|EEE75733.1|
            predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  276 bits (705), Expect = 4e-72
 Identities = 131/232 (56%), Positives = 184/232 (79%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAM 185
            +E++RE+L +I++SYS  G+   AL LL+ L+E  P+S  +I EA +V+LCK  ++D A+
Sbjct: 635  YEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTAL 694

Query: 186  EQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFI 365
            ++Y+NS+  G + GS +M+E+LI+CC   E F EASQV++DM+FCG++ SE LY+S++ +
Sbjct: 695  KEYSNSRELGFT-GSFTMFEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLL 753

Query: 366  YCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTV 545
            YCK+GFPETAHHL+D  E+   + N+ ++YVD+IE YG+LKL Q+AES+ G +R    TV
Sbjct: 754  YCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITV 813

Query: 546  DRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLMQALIVDER 701
            +RKVWNALI AYAASG YE+ARAVFNTM++DGPSPTVDS+NGL+QALIVD R
Sbjct: 814  NRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGR 865



 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 52/226 (23%), Positives = 113/226 (50%), Gaps = 2/226 (0%)
 Frame = +3

Query: 6    FELERESLFAIMNSYSLIGKRMEALALLDDLREK--VPKSHDLIAEASIVLLCKDHEVDA 179
            F++ + S+  ++++++  G   E   +   ++     P  H  +      LLC+  +V  
Sbjct: 881  FKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMH--LYRVMAQLLCRGKQVRD 938

Query: 180  AMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLV 359
                 +  +  G  K   S++ S++K     + F + +Q+Y  +K  G+EP E  Y  L+
Sbjct: 939  VEAMLSEMEEAGF-KPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILI 997

Query: 360  FIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYS 539
             +YC+   P+    L+D+  ++  L+     Y  ++ ++GK +L ++AE L  +L+    
Sbjct: 998  VMYCRDHRPKEGLVLMDEMRTVG-LEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGC 1056

Query: 540  TVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGPSPTVDSVNGLM 677
             +DR  ++ ++  Y  SG + +A+ +F+ M  +G  PT+ +++ LM
Sbjct: 1057 KLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLM 1102