BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002560
         (1498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...   118   4e-24
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   109   2e-21
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   108   4e-21
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   104   5e-20
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   103   9e-20

>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
            gi|223551309|gb|EEF52795.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 406

 Score =  118 bits (296), Expect = 4e-24
 Identities = 114/442 (25%), Positives = 175/442 (39%), Gaps = 41/442 (9%)
 Frame = -1

Query: 1375 SRWSQIPDHXXXXXXXXXXXXXL-VRFSCVCRPWRSHATPLLVPNLNLIPWLIVPYGNYT 1199
            S WS++P                 +    VC+ W S         L  +PWL++PY    
Sbjct: 2    SNWSELPQELLQTITQKQSNYVDYISTRAVCKSWWSAIPKKPHDLLCQLPWLLLPYHKNN 61

Query: 1198 CKIASNICDKTLGFFNIQDGKTYKIDTPQLADRRICGSCSGGWLVTVHENSEIQVYHPFS 1019
                        GF+N+ DGKTY ++ P+  ++R CGS S GWLV V +   I + +P +
Sbjct: 62   --------PNHRGFYNLADGKTYHLELPETIEKRCCGS-SHGWLVMVEDTPSIFLLNPLT 112

Query: 1018 KKVIQLPPVTKLPGVTGCFIGRRNELYYVVPNRPHFSYRVLEXXXXXXXXSEVRERYIYK 839
            K  I+LP ++  P              Y      + + R +           +RE YI K
Sbjct: 113  KARIELPSLSTFP--------------YFPTEVVYENSRNINEYFNTKAKLRIRETYIRK 158

Query: 838  AIMS--PSTG--IVMVIQGRFRT---LAVCRVGRVKKWYSVKGDIEGM-YNDIAIYNREF 683
            AI+S  PSTG   VM I     +   +A C+ G    W++++   + + Y D+  +  +F
Sbjct: 159  AIVSEDPSTGNFAVMAIYKTINSTENIAFCKSGDAT-WFTIQETSQKIHYQDVMFHRGKF 217

Query: 682  YAVNDFGQVFVVSSVDSGRPVIKLVISGPYG--FDYCKSYLVECKGEXXXXXXXXXXXXV 509
            YAV+D G+V +  +  +   VI++    P      Y + YL     +             
Sbjct: 218  YAVDDKGRVSICITDINPPSVIQVADPPPVPPLMGYKQWYLASLDEDLILAGRFRKYRGS 277

Query: 508  -----TACFMINKLDFSGPRWVEVKHLNRGYVDDVGKDCAMFVGYNDSFCISTSSFTGYE 344
                 T  FM+ KLD S   W+E+  L          D   F+G+N    IST ++  Y 
Sbjct: 278  GYEYQTHKFMVYKLDASSSNWLELDGLG---------DMLSFLGWNCFHSISTQNYRNYS 328

Query: 343  EHSVYFTGDILKRGLSFASELQETIYGDLGVFNLKNDVIKRFFSKSFQ------------ 200
             + +YFT D    G  F  E       D G+FNL +  ++R    S+             
Sbjct: 329  GNCIYFTDDKFIVGSDFPWEGH-----DYGIFNLDDKSVQRLGLPSYPIKLPILPFIYGY 383

Query: 199  -------------PSPIWFTTN 173
                         P PIW T N
Sbjct: 384  ERSLKRDRSSFILPPPIWVTIN 405


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  109 bits (272), Expect = 2e-21
 Identities = 110/428 (25%), Positives = 177/428 (41%), Gaps = 29/428 (6%)
 Frame = -1

Query: 1369 WSQI-PDHXXXXXXXXXXXXXLVRFSCVCRPWRSHA--TPLLVPNLNLIPWLIVPYG--N 1205
            WSQ+ P+               VRF  VC  WR+    TP  +P    +PWL++P    +
Sbjct: 4    WSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQ--LPWLMLPQSQPH 61

Query: 1204 YTCKIASNICDKTLGFFNIQDGKTYKIDTPQLADRRICGSCSGGWLVTVHENSEIQVYHP 1025
            +T +           FF++   K + +  P+ + RR     S GWL+ + E  EI + +P
Sbjct: 62   HTHR----------PFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNP 111

Query: 1024 FSKKVIQLPPVTKLPGVTG---CFIGRRNELYYVVPNRPHFSYRVLEXXXXXXXXSEVRE 854
             ++  + LPP++  P V       +GR             ++ R            ++R+
Sbjct: 112  LTRSKVHLPPLSTFPNVVRFNFADVGR------------EYALRTSSGDVYTRSLKKMRD 159

Query: 853  RYIYKAIM--SPSTG---IVMVIQGRFRTLAVCRVGRVKKWYSVKGDIEGMYNDIAIYNR 689
             +I K I+  SP+ G   I +VI  +   LA+CR  +    ++   D +    D+  +  
Sbjct: 160  SFIKKTILSSSPANGSDFIAVVILNQTGDLALCR--KSDDSWTFLEDAQSYAEDVIFHRG 217

Query: 688  EFYAVNDFGQVFVVSSVDSGRPVIKLVISGPYGFDYCKSYLVECKGE-----------XX 542
             FYAVN +G +  V  V    P +  +I  P  F     YLVE   E             
Sbjct: 218  LFYAVNKYGSI-AVCDVSGSSPRVS-IIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYD 275

Query: 541  XXXXXXXXXXVTACFMINKLDFSGPRWVEVKHLNRGYVDDVGKDCAMFVGYNDSFCISTS 362
                       T  F + +LD   PRW  V  L          D A+F+G N S  +S+ 
Sbjct: 276  VEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLG---------DRALFLGENLSLSLSSV 326

Query: 361  SFTGYEEHSVYFTGDILKRGLSFASELQETIYG--DLGVFNLKNDVIKRFFSKSFQ---P 197
             F G + + +Y+T D       ++ +  + I G  DLG+FNL++  I+      F+   P
Sbjct: 327  DFPGCKGNCIYYTDD-------YSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWP 379

Query: 196  SPIWFTTN 173
             P+W T N
Sbjct: 380  PPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  108 bits (270), Expect = 4e-21
 Identities = 111/428 (25%), Positives = 178/428 (41%), Gaps = 29/428 (6%)
 Frame = -1

Query: 1369 WSQI-PDHXXXXXXXXXXXXXLVRFSCVCRPWRSHA--TPLLVPNLNLIPWLIVPYG--N 1205
            WSQ+ P+               VRF  VC  WR+    TP  +P    +PWL++P    +
Sbjct: 4    WSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQ--LPWLMLPQSQPH 61

Query: 1204 YTCKIASNICDKTLGFFNIQDGKTYKIDTPQLADRRICGSCSGGWLVTVHENSEIQVYHP 1025
            +T +           FF++   K + +  P+ + RR     S GWL+ + E  EI + +P
Sbjct: 62   HTHR----------PFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNP 111

Query: 1024 FSKKVIQLPPVTKLPGVTG---CFIGRRNELYYVVPNRPHFSYRVLEXXXXXXXXSEVRE 854
             ++  + LPP++  P V       +GR             ++ R            ++R+
Sbjct: 112  LTRSKVHLPPLSTFPNVVRFNFADVGR------------EYALRTSSGDVYTRSLKKMRD 159

Query: 853  RYIYKAIM--SPSTG---IVMVIQGRFRTLAVCRVGRVKKWYSVKGDIEGMYNDIAIYNR 689
             +I K I+  SP+ G   I +VI  +   LA+CR  +    ++   D +    D+  +  
Sbjct: 160  SFIKKTILSSSPANGSDFIAVVILNQTGDLALCR--KSDDSWTFLEDAQSYSEDVIFHRG 217

Query: 688  EFYAVNDFGQVFVVSSVDSGRPVIKLVISGPYGFDYCKSYLVECKGE-----------XX 542
             FYAVN +G +  V  V    P +  +I  P  F     YLVE   E             
Sbjct: 218  LFYAVNKYGSI-AVCDVSGSSPRVS-IIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYD 275

Query: 541  XXXXXXXXXXVTACFMINKLDFSGPRWVEVKHLNRGYVDDVGKDCAMFVGYNDSFCISTS 362
                       T  F + +LD   PRW  V  L          D A+F+G N S  +S+ 
Sbjct: 276  VEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLG---------DRALFLGENLSLSLSSV 326

Query: 361  SFTGYEEHSVYFTGDILKRGLSFASELQETIYG--DLGVFNLKNDVIKRFFSKSFQ---P 197
             F G + + +Y+T D       ++ +  + I G  DLG+FNL++  I+      F+   P
Sbjct: 327  DFPGCKGNCIYYTDD-------YSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWP 379

Query: 196  SPIWFTTN 173
             P+W T N
Sbjct: 380  PPLWVTPN 387


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  104 bits (260), Expect = 5e-20
 Identities = 112/432 (25%), Positives = 174/432 (40%), Gaps = 29/432 (6%)
 Frame = -1

Query: 1381 MASRWSQIPDHXXXXXXXXXXXXXL-VRFSCVCRPWRSHA--TPLLVPNLNLIPWLIVPY 1211
            MA  W+Q+P                 + F  VC  W+S    TP  +P    +PWL++P 
Sbjct: 1    MAVDWTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQ--LPWLLLPQ 58

Query: 1210 GNYTCKIASNICDKTLGFFNIQDGKTYKIDTPQLADRRI-CGSCSGGWLVTVHENSEIQV 1034
                    SN       FFN+   K + ++ P+ + R+  CGS S GWL+ + ++  I V
Sbjct: 59   SQ------SNQSSYR-AFFNLSTYKFHSLNLPEASHRKKHCGS-SHGWLIILDDSPSILV 110

Query: 1033 YHPFSKKVIQLPPVTKLPGVTG---CFIGRRNELYYVVPNRPHFSYRVLEXXXXXXXXSE 863
             +P +++ I LP ++  P V       +GR   L      R   S R            +
Sbjct: 111  INPLTRRKIHLPAISSFPNVVSFDYANVGREYLLVNPQGERNTASLR------------Q 158

Query: 862  VRERYIYKAIMSPST-------GIVMVIQGRFRTLAVCRVGRVKKWYSVKGDIEGMYNDI 704
            +R+ +I K +MS S         + M I      LA C+ G   + +++  +      D+
Sbjct: 159  MRDGFIKKVVMSSSPLEKKGDFFVAMAILCSTGDLAYCKNG--DECWNIVENSRSFSEDV 216

Query: 703  AIYNREFYAVNDFGQVFVVSSVDSGRPVIKLVISGPYGFDYCKSYLVECKGE-------- 548
              +N  FYAVN  GQ+ VV  V+   P +   I  P        YLV   G+        
Sbjct: 217  IYFNGLFYAVNKAGQI-VVCDVNGNSPKVSF-IETPRQIGGDMQYLVS-SGDGLLLVTRY 273

Query: 547  XXXXXXXXXXXXVTACFMINKLDFSGPRWVEVKHLNRGYVDDVGKDCAMFVGYNDSFCIS 368
                         TA F + KLD +GPRW  V  L          D  +F+G N S  +S
Sbjct: 274  LDLDVEFDIFIYKTARFEVFKLDLNGPRWERVTSLG---------DMMLFIGENSSLALS 324

Query: 367  TSSFTGYEEHSVYFTGDILKRGLSFASELQETIYGDLGVFNLKNDVI-------KRFFSK 209
             S  +G     +Y+T D      ++   + E    DLG+F L +  I       +  +S+
Sbjct: 325  ASGLSGCMGDCIYYTDDYSAN--NYDGHIGE---HDLGIFKLSDGSIEPLPCYPRNSYSR 379

Query: 208  SFQPSPIWFTTN 173
               P P+W + N
Sbjct: 380  LQWPPPLWISPN 391


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  103 bits (258), Expect = 9e-20
 Identities = 112/437 (25%), Positives = 180/437 (41%), Gaps = 34/437 (7%)
 Frame = -1

Query: 1381 MASRWSQIPDHXXXXXXXXXXXXXLVRFS-CVCRPWRSHA--TPLLVPNLNLIPWLIVPY 1211
            M   WSQ+P                  +S  VC  WR     TP  +P    +PWL++P 
Sbjct: 1    MIMDWSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKTPNHLPPQ--LPWLMLPQ 58

Query: 1210 GNYTCKIASNICDKTLGFFNIQDGKTYKIDTPQLADR-RICGSCSGGWLVTVHENSEIQV 1034
                    S        FF++   K + ++ P+++ R R CGS S GWL+ + +   I +
Sbjct: 59   SQ------SQSNQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGS-SHGWLMILDDTPTILL 111

Query: 1033 YHPFSKKVIQLPPVTKLPGVTG---CFIGRRNELYYVVPNRPHFSYRVLEXXXXXXXXSE 863
             +P ++  + LPP++  P V       IGR   L  ++  R   S R            +
Sbjct: 112  INPLTRAKLSLPPLSSFPNVISFNYSDIGREYALRNLLGERVTVSLR------------Q 159

Query: 862  VRERYIYKAIMSPS-----TGIVMVIQGRFRTLAVCRVGRVKKWYSVKGDIEGMYNDIAI 698
            +R+ +I K ++S S       +V+ I  +   LA CR G  K W  V+ +      D+  
Sbjct: 160  MRDSFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNGD-KSWSLVE-NARSFCEDVIF 217

Query: 697  YNREFYAVNDFGQVFVVSSVDSGRPVIKLVISGPYGFDYCKSYLV-------------EC 557
             N  FYAVN  GQ+ V+  + S  P +  + + P        YLV             + 
Sbjct: 218  VNGMFYAVNKAGQI-VICDISSDSPRVSFMET-PRQAGGDMQYLVNSGDELLLVTRYLDL 275

Query: 556  KGEXXXXXXXXXXXXVTACFMINKLDFSGPRWVEVKHLNRGYVDDVGKDCAMFVGYNDSF 377
            + E             T  F + +LD++GP+W+ +  L          D A+F+G N S 
Sbjct: 276  EYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLG---------DKALFIGENSSL 326

Query: 376  CISTSSFTGYEEHSVYFTGDILKRGLS--FASELQETIYGDLGVFNLKNDVIK------R 221
             +S + F+G   + +Y+T D L       F          DLG+F L ++ I+      R
Sbjct: 327  SLSATDFSGCMGNCIYYTDDYLDANYDGHFGDH-------DLGIFKLCDETIEPLPCYPR 379

Query: 220  FFSKSFQPS-PIWFTTN 173
             F+   Q S P+W + N
Sbjct: 380  NFTSPLQWSPPLWVSPN 396