BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002463
         (1088 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|2...   266   5e-69
ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|2...   263   7e-68
ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putati...   261   2e-67
gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium h...   260   5e-67
ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotei...   259   1e-66

>ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  266 bits (681), Expect = 5e-69
 Identities = 150/247 (60%), Positives = 171/247 (69%)
 Frame = -1

Query: 1088 EDQFDTVDLSDNEIVKLENFPFLARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXX 909
            EDQFDT+DLSDNEIVKLEN P+L RLG               IG+YLPK           
Sbjct: 41   EDQFDTIDLSDNEIVKLENMPYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRL 100

Query: 908  XXXVEIDPLASLTKLRFLTLLDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAEN 729
                EIDPL+SL KL+FL+LLDN ITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+
Sbjct: 101  VNLAEIDPLSSLPKLQFLSLLDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEH 160

Query: 728  LFASKXXXXXXXXEPAKTFTPGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTL 549
            LF+SK        E  KTFTPGE+ N+PE  +E Q P V APTPEQIIAIKAAIVNSQTL
Sbjct: 161  LFSSKEVEEEAKRESVKTFTPGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTL 220

Query: 548  EEVARLEKALKSGQLPADLKIPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDG 369
            EEVARLEKAL SGQLPADLKI  D  +  V+ QDDKM  D++N A  + ++ E Q+ N+ 
Sbjct: 221  EEVARLEKALNSGQLPADLKILDDTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEA 278

Query: 368  PATMEQD 348
               MEQ+
Sbjct: 279  -TPMEQE 284


>ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  263 bits (671), Expect = 7e-68
 Identities = 151/247 (61%), Positives = 168/247 (68%)
 Frame = -1

Query: 1088 EDQFDTVDLSDNEIVKLENFPFLARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXX 909
            EDQFDT+DLSDNEIVKLEN P+L RLG               IG+YLPK           
Sbjct: 41   EDQFDTIDLSDNEIVKLENMPYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRL 100

Query: 908  XXXVEIDPLASLTKLRFLTLLDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAEN 729
                EIDPLASL KL FL+LLDNNITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+
Sbjct: 101  VNLAEIDPLASLPKLHFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEH 160

Query: 728  LFASKXXXXXXXXEPAKTFTPGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTL 549
            LFASK        E  KTFTPGE+ NV E  +E Q P V APTP+QIIAIKAAIVNSQTL
Sbjct: 161  LFASKEVEEEARRESVKTFTPGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTL 220

Query: 548  EEVARLEKALKSGQLPADLKIPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDG 369
            EEVARLEKAL SGQLPADLKI     +  V+ QDDKM  D +N A  + ++ E Q+ N+ 
Sbjct: 221  EEVARLEKALNSGQLPADLKILDGTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEA 278

Query: 368  PATMEQD 348
               MEQ+
Sbjct: 279  -TPMEQE 284


>ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]
            gi|223548673|gb|EEF50164.1| U2 small nuclear
            ribonucleoprotein A, putative [Ricinus communis]
          Length = 287

 Score =  261 bits (667), Expect = 2e-67
 Identities = 147/248 (59%), Positives = 169/248 (68%), Gaps = 1/248 (0%)
 Frame = -1

Query: 1088 EDQFDTVDLSDNEIVKLENFPFLARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXX 909
            EDQFDT+DLSDNEIVKLEN P+L RLG               IG++LPK           
Sbjct: 41   EDQFDTIDLSDNEIVKLENMPYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL 100

Query: 908  XXXVEIDPLASLTKLRFLTLLDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAEN 729
               VEIDPLASL KL+FL+LLDN+ITKKPNYRLY+I KLKSLRVLDF KVK KER+EAEN
Sbjct: 101  VNLVEIDPLASLPKLQFLSLLDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAEN 160

Query: 728  LFASKXXXXXXXXEPAKTFTPGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTL 549
            LFASK        E AKTF PGE+ NV E  +E Q P V APTPEQIIAIKAAIVNSQTL
Sbjct: 161  LFASKEVEEEAIRESAKTFIPGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTL 220

Query: 548  EEVARLEKALKSGQLPADLKI-PGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKND 372
            EEVARLEKAL SGQ+P DL I   D +   V+ +DDKM  D  N    +  + + Q+ +D
Sbjct: 221  EEVARLEKALNSGQIPTDLNIFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSD 280

Query: 371  GPATMEQD 348
              A+MEQ+
Sbjct: 281  S-ASMEQE 287


>gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]
          Length = 285

 Score =  260 bits (664), Expect = 5e-67
 Identities = 146/247 (59%), Positives = 172/247 (69%)
 Frame = -1

Query: 1088 EDQFDTVDLSDNEIVKLENFPFLARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXX 909
            EDQFDT+DLSDNEIVKL+NFP+L RLG               IG++LP            
Sbjct: 41   EDQFDTIDLSDNEIVKLDNFPYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRL 100

Query: 908  XXXVEIDPLASLTKLRFLTLLDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAEN 729
               VEIDPL+SL KL+FL+LLDNNITKKPNYRLYVI KLKSLRVLDF KVK KER+EAEN
Sbjct: 101  VNLVEIDPLSSLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAEN 160

Query: 728  LFASKXXXXXXXXEPAKTFTPGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTL 549
            LFASK        E  KT  P E+ NV E  +E+Q P V APTPEQI+AIKAAIVNSQTL
Sbjct: 161  LFASKEAEEEIKKESTKTVAPKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTL 220

Query: 548  EEVARLEKALKSGQLPADLKIPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDG 369
            EEVARLEKAL++GQLPADLKIPGD+     +  D+K   D +N +  + D+ + + KN+ 
Sbjct: 221  EEVARLEKALQTGQLPADLKIPGDD-TNAAKGGDEKKVSDIQNESNVEPDNMD-EDKNEE 278

Query: 368  PATMEQD 348
            PA MEQ+
Sbjct: 279  PAPMEQE 285


>ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera]
            gi|296085571|emb|CBI29303.3| unnamed protein product
            [Vitis vinifera]
          Length = 287

 Score =  259 bits (661), Expect = 1e-66
 Identities = 146/248 (58%), Positives = 170/248 (68%), Gaps = 1/248 (0%)
 Frame = -1

Query: 1088 EDQFDTVDLSDNEIVKLENFPFLARLGXXXXXXXXXXXXXXXIGDYLPKXXXXXXXXXXX 909
            EDQFDT+DLSDNEIVKLEN P+L RLG               IG+YLPK           
Sbjct: 41   EDQFDTIDLSDNEIVKLENLPYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRL 100

Query: 908  XXXVEIDPLASLTKLRFLTLLDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAEN 729
                EIDPL+S  KL+FL+LLDNNITKKPNYRLYVI +LKSLR+LDF KVK+KER+EAEN
Sbjct: 101  VNLAEIDPLSSFPKLQFLSLLDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAEN 160

Query: 728  LFASKXXXXXXXXEPAKTFTPGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTL 549
            LFASK        EP KTFTPGE+ N  E  +E Q P V  P+PE++IAIKAAIVNSQTL
Sbjct: 161  LFASKEVEEEAKQEPLKTFTPGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTL 220

Query: 548  EEVARLEKALKSGQLPADLK-IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKND 372
            EEVARLEKALKSGQLPADLK +  + +A  V  +DDKM     N + ++    E +QKND
Sbjct: 221  EEVARLEKALKSGQLPADLKSLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVE-EQKND 279

Query: 371  GPATMEQD 348
              A MEQ+
Sbjct: 280  DVAPMEQE 287